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1_Pooling/config.json

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+{
+  "word_embedding_dimension": 768,
+  "pooling_mode_cls_token": false,
+  "pooling_mode_mean_tokens": true,
+  "pooling_mode_max_tokens": false,
+  "pooling_mode_mean_sqrt_len_tokens": false,
+  "pooling_mode_weightedmean_tokens": false,
+  "pooling_mode_lasttoken": false,
+  "include_prompt": true
+}

README.md

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+---
+pipeline_tag: sentence-similarity
+tags:
+- sentence-transformers
+- feature-extraction
+- sentence-similarity
+- transformers
+---
+
+# S-PubMedBert-MS-MARCO-SCIFACT
+
+This is a [sentence-transformers](https://www.SBERT.net) model: It maps sentences & paragraphs to a 768 dimensional dense vector space and can be used for tasks like clustering or semantic search.
+
+<!--- Describe your model here -->
+
+## Usage (Sentence-Transformers)
+
+Using this model becomes easy when you have [sentence-transformers](https://www.SBERT.net) installed:
+
+```
+pip install -U sentence-transformers
+```
+
+Then you can use the model like this:
+
+```python
+from sentence_transformers import SentenceTransformer
+sentences = ["This is an example sentence", "Each sentence is converted"]
+
+model = SentenceTransformer('S-PubMedBert-MS-MARCO-SCIFACT')
+embeddings = model.encode(sentences)
+print(embeddings)
+```
+
+
+
+## Usage (HuggingFace Transformers)
+Without [sentence-transformers](https://www.SBERT.net), you can use the model like this: First, you pass your input through the transformer model, then you have to apply the right pooling-operation on-top of the contextualized word embeddings.
+
+```python
+from transformers import AutoTokenizer, AutoModel
+import torch
+
+
+#Mean Pooling - Take attention mask into account for correct averaging
+def mean_pooling(model_output, attention_mask):
+    token_embeddings = model_output[0] #First element of model_output contains all token embeddings
+    input_mask_expanded = attention_mask.unsqueeze(-1).expand(token_embeddings.size()).float()
+    return torch.sum(token_embeddings * input_mask_expanded, 1) / torch.clamp(input_mask_expanded.sum(1), min=1e-9)
+
+
+# Sentences we want sentence embeddings for
+sentences = ['This is an example sentence', 'Each sentence is converted']
+
+# Load model from HuggingFace Hub
+tokenizer = AutoTokenizer.from_pretrained('S-PubMedBert-MS-MARCO-SCIFACT')
+model = AutoModel.from_pretrained('S-PubMedBert-MS-MARCO-SCIFACT')
+
+# Tokenize sentences
+encoded_input = tokenizer(sentences, padding=True, truncation=True, return_tensors='pt')
+
+# Compute token embeddings
+with torch.no_grad():
+    model_output = model(**encoded_input)
+
+# Perform pooling. In this case, max pooling.
+sentence_embeddings = mean_pooling(model_output, encoded_input['attention_mask'])
+
+print("Sentence embeddings:")
+print(sentence_embeddings)
+```
+
+
+
+## Evaluation Results
+
+<!--- Describe how your model was evaluated -->
+
+For an automated evaluation of this model, see the *Sentence Embeddings Benchmark*: [https://seb.sbert.net](https://seb.sbert.net?model_name={MODEL_NAME})
+
+
+## Training
+The model was trained with the parameters:
+
+**DataLoader**:
+
+`sentence_transformers.datasets.NoDuplicatesDataLoader.NoDuplicatesDataLoader` of length 560 with parameters:
+```
+{'batch_size': 16}
+```
+
+**Loss**:
+
+`sentence_transformers.losses.MultipleNegativesRankingLoss.MultipleNegativesRankingLoss` with parameters:
+  ```
+  {'scale': 20.0, 'similarity_fct': 'cos_sim'}
+  ```
+
+Parameters of the fit()-Method:
+```
+{
+    "callback": null,
+    "epochs": 1,
+    "evaluation_steps": 10000,
+    "evaluator": "sentence_transformers.evaluation.SequentialEvaluator.SequentialEvaluator",
+    "max_grad_norm": 1,
+    "optimizer_class": "<class 'transformers.optimization.AdamW'>",
+    "optimizer_params": {
+        "correct_bias": false,
+        "eps": 1e-06,
+        "lr": 2e-05
+    },
+    "scheduler": "WarmupLinear",
+    "steps_per_epoch": null,
+    "warmup_steps": 56,
+    "weight_decay": 0.01
+}
+```
+
+
+## Full Model Architecture
+```
+SentenceTransformer(
+  (0): Transformer({'max_seq_length': 350, 'do_lower_case': False}) with Transformer model: BertModel 
+  (1): Pooling({'word_embedding_dimension': 768, 'pooling_mode_cls_token': False, 'pooling_mode_mean_tokens': True, 'pooling_mode_max_tokens': False, 'pooling_mode_mean_sqrt_len_tokens': False})
+)
+```
+
+## Citing & Authors
+
+<!--- Describe where people can find more information -->
+If you use this model cite the following paper
+
+```
+@article{deka2022improved,
+  title={Improved Methods To Aid Unsupervised Evidence-Based Fact Checking For Online Health News},
+  author={Deka, Pritam and Jurek-Loughrey, Anna and Deepak, P},
+  journal={Journal of Data Intelligence},
+  volume={3},
+  number={4},
+  pages={474--504},
+  year={2022}
+}
+
+```

config.json

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+{
+  "architectures": [
+    "BertModel"
+  ],
+  "attention_probs_dropout_prob": 0.1,
+  "classifier_dropout": null,
+  "hidden_act": "gelu",
+  "hidden_dropout_prob": 0.1,
+  "hidden_size": 768,
+  "initializer_range": 0.02,
+  "intermediate_size": 3072,
+  "layer_norm_eps": 1e-12,
+  "max_position_embeddings": 512,
+  "model_type": "bert",
+  "num_attention_heads": 12,
+  "num_hidden_layers": 12,
+  "pad_token_id": 0,
+  "position_embedding_type": "absolute",
+  "torch_dtype": "float32",
+  "transformers_version": "4.52.4",
+  "type_vocab_size": 2,
+  "use_cache": true,
+  "vocab_size": 30522
+}

config_sentence_transformers.json

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+{
+  "__version__": {
+    "sentence_transformers": "4.1.0",
+    "transformers": "4.52.4",
+    "pytorch": "2.6.0+cu124"
+  },
+  "prompts": {},
+  "default_prompt_name": null,
+  "similarity_fn_name": "cosine"
+}

model.safetensors

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+version https://git-lfs.github.com/spec/v1
+oid sha256:cef1071bcf0ba6bf1b0958c0d7d1fecd27ad219bd2d46461c78c2ac0e16f18a9
+size 437951328

modules.json

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+[
+  {
+    "idx": 0,
+    "name": "0",
+    "path": "",
+    "type": "sentence_transformers.models.Transformer"
+  },
+  {
+    "idx": 1,
+    "name": "1",
+    "path": "1_Pooling",
+    "type": "sentence_transformers.models.Pooling"
+  }
+]

sentence_bert_config.json

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+{
+  "max_seq_length": 350,
+  "do_lower_case": false
+}

special_tokens_map.json

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+{
+  "cls_token": {
+    "content": "[CLS]",
+    "lstrip": false,
+    "normalized": false,
+    "rstrip": false,
+    "single_word": false
+  },
+  "mask_token": {
+    "content": "[MASK]",
+    "lstrip": false,
+    "normalized": false,
+    "rstrip": false,
+    "single_word": false
+  },
+  "pad_token": {
+    "content": "[PAD]",
+    "lstrip": false,
+    "normalized": false,
+    "rstrip": false,
+    "single_word": false
+  },
+  "sep_token": {
+    "content": "[SEP]",
+    "lstrip": false,
+    "normalized": false,
+    "rstrip": false,
+    "single_word": false
+  },
+  "unk_token": {
+    "content": "[UNK]",
+    "lstrip": false,
+    "normalized": false,
+    "rstrip": false,
+    "single_word": false
+  }
+}

tokenizer_config.json

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+{
+  "added_tokens_decoder": {
+    "0": {
+      "content": "[PAD]",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "1": {
+      "content": "[UNK]",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "2": {
+      "content": "[CLS]",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "3": {
+      "content": "[SEP]",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    },
+    "4": {
+      "content": "[MASK]",
+      "lstrip": false,
+      "normalized": false,
+      "rstrip": false,
+      "single_word": false,
+      "special": true
+    }
+  },
+  "clean_up_tokenization_spaces": false,
+  "cls_token": "[CLS]",
+  "do_basic_tokenize": true,
+  "do_lower_case": true,
+  "extra_special_tokens": {},
+  "mask_token": "[MASK]",
+  "max_length": 350,
+  "model_max_length": 350,
+  "never_split": null,
+  "pad_to_multiple_of": null,
+  "pad_token": "[PAD]",
+  "pad_token_type_id": 0,
+  "padding_side": "right",
+  "sep_token": "[SEP]",
+  "stride": 0,
+  "strip_accents": null,
+  "tokenize_chinese_chars": true,
+  "tokenizer_class": "BertTokenizer",
+  "truncation_side": "right",
+  "truncation_strategy": "longest_first",
+  "unk_token": "[UNK]"
+}