| defined_as: kipoi.model.KerasModel |
| args: |
| arch: |
| url: https://zenodo.org/record/5502060/files/DeepSTARR.model.json?download=1 |
| md5: 9b796f79441e53dc75dd79b911fff872 |
| weights: |
| url: https://zenodo.org/record/5502060/files/DeepSTARR.model.h5?download=1 |
| md5: 7e53a9351b2520a4713a5ffdb5f1566c |
|
|
| default_dataloader: |
| defined_as: kipoiseq.dataloaders.SeqIntervalDl |
|
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| default_args: |
| auto_resize_len: 249 |
| alphabet_axis: 1 |
| dummy_axis: 2 |
| alphabet: "ACGT" |
| ignore_targets: False |
|
|
| info: |
| authors: |
| - name: Bernardo P. de Almeida |
| github: bernardo-de-almeida |
| email: bernardo.almeida94@gmail.com |
| doc: Model predicting the activities of developmental and housekeeping enhancers in Drosophila S2 cells |
| cite_as: https://doi.org/10.1101/2021.10.05.463203 |
| trained_on: Developmental and housekeeping quantitative enhancer activity. Held-out second half of chromosome 2R. |
| license: MIT |
|
|
| dependencies: |
| conda: |
| - python=3.7 |
| - h5py=3.6.0 |
| - pip=21.2.2 |
| pip: |
| - keras==2.7.0 |
| - tensorflow==2.7.0 |
|
|
| schema: |
| inputs: |
| shape: (249,4,1) |
| doc: DNA sequence |
|
|
| targets: |
| shape: (2,) |
| doc: Developmental and housekeeping enhancer activity |
| |
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