Add training gene scale to the topic banks for nnls inference
Browse files
topic_banks/all_genes/manifest.json
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@@ -48,10 +48,15 @@
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},
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"gene_representation": "projected_input",
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"cell_input": "unmasked counts, centered by inference_mean",
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"files": {
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"topics.safetensors": "
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"genes.json": "9408f34a417bd07efd8c43ac288a0dbd64f4991d4aeed449d40d8fba50b9e99743399ff042b2754102d8f841bc62ee9c5e5e202b406707db2a456d69e42bb687",
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"symbols.json": "68903903f69ede2de0f0dbcb72e0b7cf13f0703f4d596727f0cc0e67e11f4c3fbc9611d00d69e36944396f2eab11de7b0ad1b920106572a71219c51f19af895c"
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},
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"bank_id": "
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}
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},
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"gene_representation": "projected_input",
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"cell_input": "unmasked counts, centered by inference_mean",
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"gene_scale": {
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"statistic": "standard deviation of counts per million over every training cell",
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"cells": 7514220,
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"manifest_identity": "b02ed9ff9f0f94553281fda4782d87414a89100fa0f3698e946440d0c939a14a9d1d89450e6b73c52e5d7daa86e1211bba5a8008ad645838e3062c6032832eaa"
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},
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"files": {
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"topics.safetensors": "7c7f66e7153de1b33ba24845b1684b51ef18a422e6dd0d346c5bf5293c587b3f683662e4108cba8e7346d77a8da15310316c57923c4428beebc231a0c6a723a1",
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"genes.json": "9408f34a417bd07efd8c43ac288a0dbd64f4991d4aeed449d40d8fba50b9e99743399ff042b2754102d8f841bc62ee9c5e5e202b406707db2a456d69e42bb687",
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"symbols.json": "68903903f69ede2de0f0dbcb72e0b7cf13f0703f4d596727f0cc0e67e11f4c3fbc9611d00d69e36944396f2eab11de7b0ad1b920106572a71219c51f19af895c"
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},
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"bank_id": "081f0a8f6029926501197ae6fe37c215c1b75c9bfd957711336f6c0b54f1999baf5177bff9e7d00ecdef3ddc27830ff1dfc797f40d95e54158907b88db2c0871"
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}
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topic_banks/all_genes/topics.safetensors
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@@ -1,3 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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oid sha256:
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-
size
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version https://git-lfs.github.com/spec/v1
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oid sha256:d8dfb418ff2169ab2da3658785749ea00684a3f4cdfe789daf47c2d11e32941c
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size 30230712
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topic_banks/default/manifest.json
CHANGED
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@@ -48,10 +48,15 @@
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},
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"gene_representation": "projected_input",
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"cell_input": "unmasked counts, centered by inference_mean",
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"files": {
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-
"topics.safetensors": "
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"genes.json": "9408f34a417bd07efd8c43ac288a0dbd64f4991d4aeed449d40d8fba50b9e99743399ff042b2754102d8f841bc62ee9c5e5e202b406707db2a456d69e42bb687",
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| 54 |
"symbols.json": "68903903f69ede2de0f0dbcb72e0b7cf13f0703f4d596727f0cc0e67e11f4c3fbc9611d00d69e36944396f2eab11de7b0ad1b920106572a71219c51f19af895c"
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},
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-
"bank_id": "
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}
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},
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"gene_representation": "projected_input",
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"cell_input": "unmasked counts, centered by inference_mean",
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| 51 |
+
"gene_scale": {
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+
"statistic": "standard deviation of counts per million over every training cell",
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+
"cells": 7514220,
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+
"manifest_identity": "b02ed9ff9f0f94553281fda4782d87414a89100fa0f3698e946440d0c939a14a9d1d89450e6b73c52e5d7daa86e1211bba5a8008ad645838e3062c6032832eaa"
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},
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"files": {
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"topics.safetensors": "68464792c3c6f99c1b34783a97c4b3aa906a0f81f27c564a1290c885f66a7a53cca2cc22827673ce508cb517fb2f6d4ead64a1e06079b1c054c8c7f12f63bd73",
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"genes.json": "9408f34a417bd07efd8c43ac288a0dbd64f4991d4aeed449d40d8fba50b9e99743399ff042b2754102d8f841bc62ee9c5e5e202b406707db2a456d69e42bb687",
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"symbols.json": "68903903f69ede2de0f0dbcb72e0b7cf13f0703f4d596727f0cc0e67e11f4c3fbc9611d00d69e36944396f2eab11de7b0ad1b920106572a71219c51f19af895c"
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},
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+
"bank_id": "c36b9b07b07623ebf2fb6bf1dc32a968de0f5fdc1fa768ea06c89124dc65ecb42f33467ca8675d55ad97a135591c52ddb8d326f16badf6092ae023b73b2dbb6d"
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}
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topic_banks/default/topics.safetensors
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@@ -1,3 +1,3 @@
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version https://git-lfs.github.com/spec/v1
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oid sha256:
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-
size
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version https://git-lfs.github.com/spec/v1
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oid sha256:1414a5b2be0ea1dd601c12332fe6436eca107d1d113566dce739fe9c3635e069
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size 30230712
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