MicroridgeVectorAI / registry.json
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Replace v2 with v3: membrane-first label priority
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{
"models": [
{
"architecture": "plainconv",
"artifact_sha256": {
"dataset.json": "aa6242b569dc3fa70ee707db38970fd7e97fbfb45f48aa7f1a68a1c7a5a899cf",
"dataset_fingerprint.json": "9234acf421a087a276d8271f214cbddfdd97c1b71f4974e18a71fe44f680c7b9",
"fold_0/checkpoint_best.pth": "74ae48ea41fb2ebe5fefe00a775f5ee61b81d3bb91963e0ffc9c35630f3f1a3a",
"fold_0/checkpoint_final.pth": "c513cee01f60eb21f2b9ee74f9f0fd2d44a84d99437440d7e1836ccfd91e25bb",
"plans.json": "edadfcb32d5d88e1da2c466bc16cf0e34521c148596c91bf57805f33b94c1d4a"
},
"augmentation_profile_hash": "6f738a972b6f7eba84ee6a2cd5cbd01f83dbed2afa9633439b89e76bb3a5a4dd",
"backend_id": "nnunetv2-local",
"backend_version": "2.8.1",
"benchmark_id": null,
"checkpoint_path": "fold_0/checkpoint_final.pth",
"checkpoint_sha256": "c513cee01f60eb21f2b9ee74f9f0fd2d44a84d99437440d7e1836ccfd91e25bb",
"configuration": {
"configuration": "2d",
"dataset_id": 503,
"dataset_name": "MicroridgeMembraneFirst",
"epochs": 100,
"executed_locally": true,
"fold": 0,
"label_priority": "membrane-first-v2",
"membrane_width_px": 3,
"microridge_width_px": 5,
"plan_command": "nnUNetv2_plan_and_preprocess -d 503 -c 2d --verify_dataset_integrity",
"plans": "nnUNetPlans",
"source_data": "full view field tiles, trustworthy regions only",
"split_grouping": "specimen:field_frame_uri",
"supersedes": "Dataset502 (exclusive-v1) whose labels lost 71% of the membrane",
"torch_version": "2.12.1+cu130",
"train_command": "nnUNetv2_train 503 2d 0 -tr nnUNetTrainer_100epochs --npz",
"trainer": "nnUNetTrainer_100epochs",
"training_job_id": "064df461-43de-4393-aca9-51b2d97209e4"
},
"created_at": "2026-09-01T10:29:13.172184Z",
"dataset_artifact_hash": "f5a648f0dde8485a96df95d26d7b0edadd68482a8d9fa1c91420b1c58809d090",
"folds_completed": [
0
],
"incomplete_provenance_fields": [],
"input_contract": "image/2d",
"label_contract": "cellvector.annotation/1.0.0",
"metrics": {
"frozen_test_cases": 36,
"frozen_test_cell_membrane_boundary_f1": 0.87437327255091,
"frozen_test_cell_membrane_dice": 0.7074205306372878,
"frozen_test_cell_region_dice": 0.9432985097912598,
"frozen_test_cell_region_iou": 0.8930619679511916,
"frozen_test_microridge_dice": 0.8519748198693858,
"frozen_test_microridge_precision": 0.8986679339680429,
"frozen_test_microridge_recall": 0.8215124251430418,
"frozen_test_microridge_skeleton_length_error": 0.10468182937528298,
"nnunet_validation_dice_cell_membrane": 0.6959348980123595,
"nnunet_validation_dice_cell_region": 0.9642334995848282,
"nnunet_validation_dice_microridge": 0.8858968681328583
},
"model_id": "a619b15c-e00f-489b-887c-6386e3836c11",
"parent_model_id": null,
"provenance_status": "verified",
"selected_at": null,
"selection_actor": null,
"selection_reason": null,
"snapshot_hash": "dbe134f83c52b8ecae6cb62182310205496497ec297406ed8a2c912b60ba8cc9",
"software_smoke_test": false,
"status": "trained",
"training_job_id": "064df461-43de-4393-aca9-51b2d97209e4",
"updated_at": "2026-09-01T10:29:13.172184Z"
}
],
"schema_version": "1.0.0"
}