Download model_config.json from long-unicam/drugprot-scibert-ner-rel: direct link, hf CLI and curl.
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https://huggingface.co/long-unicam/drugprot-scibert-ner-rel/resolve/main/model_config.json
- Command line
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hf download hf://long-unicam/drugprot-scibert-ner-rel/model_config.json
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curl -L -o model_config.json https://huggingface.co/long-unicam/drugprot-scibert-ner-rel/resolve/main/model_config.json
2.82 kB
| { | |
| "bert_config": { | |
| "transformers_version": "5.22.2", | |
| "architectures": null, | |
| "output_hidden_states": false, | |
| "return_dict": true, | |
| "dtype": null, | |
| "chunk_size_feed_forward": 0, | |
| "is_encoder_decoder": false, | |
| "id2label": { | |
| "0": "LABEL_0", | |
| "1": "LABEL_1" | |
| }, | |
| "label2id": { | |
| "LABEL_0": 0, | |
| "LABEL_1": 1 | |
| }, | |
| "problem_type": null, | |
| "vocab_size": 31116, | |
| "hidden_size": 768, | |
| "num_hidden_layers": 12, | |
| "num_attention_heads": 12, | |
| "intermediate_size": 3072, | |
| "hidden_act": "gelu", | |
| "hidden_dropout_prob": 0.1, | |
| "attention_probs_dropout_prob": 0.1, | |
| "max_position_embeddings": 512, | |
| "type_vocab_size": 2, | |
| "initializer_range": 0.02, | |
| "layer_norm_eps": 1e-12, | |
| "pad_token_id": 0, | |
| "use_cache": true, | |
| "classifier_dropout": null, | |
| "is_decoder": false, | |
| "add_cross_attention": false, | |
| "bos_token_id": null, | |
| "eos_token_id": null, | |
| "tie_word_embeddings": true, | |
| "_name_or_path": "", | |
| "model_type": "bert", | |
| "output_attentions": false | |
| }, | |
| "max_span_width": 24, | |
| "head_hidden_size": 512, | |
| "dropout": 0.2, | |
| "relation_input": "markers", | |
| "relation_objective": "sigmoid", | |
| "relation_threshold": 0.5, | |
| "relation_markers": { | |
| "chemical_start": [ | |
| 5699, | |
| 1360, | |
| 3556, | |
| 1360 | |
| ], | |
| "chemical_end": [ | |
| 5699 | |
| ], | |
| "gene_start": [ | |
| 3057, | |
| 7691, | |
| 1086, | |
| 7691 | |
| ], | |
| "gene_end": [ | |
| 3057 | |
| ] | |
| }, | |
| "ner_labels": [ | |
| "None", | |
| "CHEMICAL", | |
| "GENE" | |
| ], | |
| "relation_labels": [ | |
| "No_relation", | |
| "ACTIVATOR", | |
| "AGONIST", | |
| "AGONIST-ACTIVATOR", | |
| "AGONIST-INHIBITOR", | |
| "ANTAGONIST", | |
| "DIRECT-REGULATOR", | |
| "INDIRECT-DOWNREGULATOR", | |
| "INDIRECT-UPREGULATOR", | |
| "INHIBITOR", | |
| "PART-OF", | |
| "PRODUCT-OF", | |
| "SUBSTRATE", | |
| "SUBSTRATE_PRODUCT-OF" | |
| ], | |
| "checkpoint": "best", | |
| "epoch": 6, | |
| "step": 13895, | |
| "train_config": { | |
| "max_seq_len": 256, | |
| "max_span_width": 24, | |
| "head_hidden_size": 512, | |
| "dropout": 0.2, | |
| "relation_input": "markers", | |
| "relation_objective": "sigmoid", | |
| "relation_threshold": 0.5, | |
| "mode": "joint", | |
| "lambda_rel": 1.0, | |
| "max_pairs_per_step": 128, | |
| "epochs": 8, | |
| "max_steps": null, | |
| "batch_size": 16, | |
| "encoder_lr": 3e-05, | |
| "head_lr": 0.001, | |
| "weight_decay": 0.01, | |
| "warmup_proportion": 0.1, | |
| "grad_clip": 1.0, | |
| "bf16": false, | |
| "early_stopping_patience": 3, | |
| "eval_every_epochs": 1, | |
| "seed": 42 | |
| }, | |
| "provenance": { | |
| "corpus": "DrugProt (BioCreative VII Track 1) v1.2: training set minus 350 abstracts held out for model selection", | |
| "initialised_from": "allenai/scibert_scivocab_cased; NER and relation heads randomly initialised", | |
| "tokenizer": "allenai/scibert_scivocab_cased (cased, do_lower_case=False)", | |
| "mode": "joint", | |
| "lambda_rel": 1.0, | |
| "relation_input": "markers", | |
| "relation_objective": "sigmoid", | |
| "optimizer": "AdamW + linear warm-up/decay, global gradient-norm clipping", | |
| "seed": 42, | |
| "torch": "2.14.1+cu126" | |
| } | |
| } |