Download mmdetection/projects/XDecoder/xdecoder/transformer_blocks.py from maverickrzw/ct_detection: direct link, hf CLI and curl.
- Browser
- Download file 15.4 kB
-
https://huggingface.co/maverickrzw/ct_detection/resolve/main/mmdetection/projects/XDecoder/xdecoder/transformer_blocks.py
- Command line
-
hf download hf://maverickrzw/ct_detection/mmdetection/projects/XDecoder/xdecoder/transformer_blocks.py
-
curl -L -o transformer_blocks.py https://huggingface.co/maverickrzw/ct_detection/resolve/main/mmdetection/projects/XDecoder/xdecoder/transformer_blocks.py
15.4 kB
| import copy | |
| import math | |
| from typing import Optional | |
| import torch | |
| import torch.nn.functional as F | |
| from torch import Tensor, nn | |
| # modified from https://github.com/microsoft/X-Decoder/blob/main/xdecoder/body/transformer_blocks.py # noqa | |
| """Transformer class. | |
| Copy-paste from torch.nn.Transformer with modifications: | |
| * positional encodings are passed in MHattention | |
| * extra LN at the end of encoder is removed | |
| * decoder returns a stack of activations from all decoding layers | |
| """ | |
| class Conv2d(torch.nn.Conv2d): | |
| """A wrapper around :class:`torch.nn.Conv2d` to support empty inputs and | |
| more features.""" | |
| def __init__(self, *args, **kwargs): | |
| """Extra keyword arguments supported in addition to those in | |
| `torch.nn.Conv2d`: | |
| Args: | |
| norm (nn.Module, optional): a normalization layer | |
| activation (callable(Tensor) -> Tensor): a callable | |
| activation function | |
| It assumes that norm layer is used before activation. | |
| """ | |
| norm = kwargs.pop('norm', None) | |
| activation = kwargs.pop('activation', None) | |
| super().__init__(*args, **kwargs) | |
| self.norm = norm | |
| self.activation = activation | |
| def forward(self, x): | |
| x = F.conv2d(x, self.weight, self.bias, self.stride, self.padding, | |
| self.dilation, self.groups) | |
| if self.norm is not None: | |
| x = self.norm(x) | |
| if self.activation is not None: | |
| x = self.activation(x) | |
| return x | |
| class PositionEmbeddingSine(nn.Module): | |
| """This is a more standard version of the position embedding, very similar | |
| to the one used by the Attention is all you need paper, generalized to work | |
| on images.""" | |
| def __init__(self, | |
| num_pos_feats=64, | |
| temperature=10000, | |
| normalize=False, | |
| scale=None): | |
| super().__init__() | |
| self.num_pos_feats = num_pos_feats | |
| self.temperature = temperature | |
| self.normalize = normalize | |
| if scale is not None and normalize is False: | |
| raise ValueError('normalize should be True if scale is passed') | |
| if scale is None: | |
| scale = 2 * math.pi | |
| self.scale = scale | |
| def forward(self, x, mask=None): | |
| if mask is None: | |
| mask = torch.zeros((x.size(0), x.size(2), x.size(3)), | |
| device=x.device, | |
| dtype=torch.bool) | |
| not_mask = ~mask | |
| y_embed = not_mask.cumsum(1, dtype=x.dtype) | |
| x_embed = not_mask.cumsum(2, dtype=x.dtype) | |
| if self.normalize: | |
| eps = 1e-6 | |
| y_embed = y_embed / (y_embed[:, -1:, :] + eps) * self.scale | |
| x_embed = x_embed / (x_embed[:, :, -1:] + eps) * self.scale | |
| dim_t = torch.arange( | |
| self.num_pos_feats, dtype=x.dtype, device=x.device) | |
| dim_t = self.temperature**(2 * (dim_t // 2) / self.num_pos_feats) | |
| pos_x = x_embed[:, :, :, None] / dim_t | |
| pos_y = y_embed[:, :, :, None] / dim_t | |
| pos_x = torch.stack( | |
| (pos_x[:, :, :, 0::2].sin(), pos_x[:, :, :, 1::2].cos()), | |
| dim=4).flatten(3) | |
| pos_y = torch.stack( | |
| (pos_y[:, :, :, 0::2].sin(), pos_y[:, :, :, 1::2].cos()), | |
| dim=4).flatten(3) | |
| pos = torch.cat((pos_y, pos_x), dim=3).permute(0, 3, 1, 2) | |
| return pos | |
| def __repr__(self, _repr_indent=4): | |
| head = 'Positional encoding ' + self.__class__.__name__ | |
| body = [ | |
| 'num_pos_feats: {}'.format(self.num_pos_feats), | |
| 'temperature: {}'.format(self.temperature), | |
| 'normalize: {}'.format(self.normalize), | |
| 'scale: {}'.format(self.scale), | |
| ] | |
| # _repr_indent = 4 | |
| lines = [head] + [' ' * _repr_indent + line for line in body] | |
| return '\n'.join(lines) | |
| class TransformerEncoder(nn.Module): | |
| def __init__(self, encoder_layer, num_layers, norm=None): | |
| super().__init__() | |
| self.layers = _get_clones(encoder_layer, num_layers) | |
| self.num_layers = num_layers | |
| self.norm = norm | |
| def forward( | |
| self, | |
| src, | |
| mask: Optional[Tensor] = None, | |
| src_key_padding_mask: Optional[Tensor] = None, | |
| pos: Optional[Tensor] = None, | |
| ): | |
| output = src | |
| for layer in self.layers: | |
| output = layer( | |
| output, | |
| src_mask=mask, | |
| src_key_padding_mask=src_key_padding_mask, | |
| pos=pos) | |
| if self.norm is not None: | |
| output = self.norm(output) | |
| return output | |
| class TransformerEncoderLayer(nn.Module): | |
| def __init__( | |
| self, | |
| d_model, | |
| nhead, | |
| dim_feedforward=2048, | |
| dropout=0.1, | |
| activation='relu', | |
| normalize_before=False, | |
| ): | |
| super().__init__() | |
| self.self_attn = nn.MultiheadAttention(d_model, nhead, dropout=dropout) | |
| # Implementation of Feedforward model | |
| self.linear1 = nn.Linear(d_model, dim_feedforward) | |
| self.dropout = nn.Dropout(dropout) | |
| self.linear2 = nn.Linear(dim_feedforward, d_model) | |
| self.norm1 = nn.LayerNorm(d_model) | |
| self.norm2 = nn.LayerNorm(d_model) | |
| self.dropout1 = nn.Dropout(dropout) | |
| self.dropout2 = nn.Dropout(dropout) | |
| self.activation = _get_activation_fn(activation) | |
| self.normalize_before = normalize_before | |
| def with_pos_embed(self, tensor, pos: Optional[Tensor]): | |
| return tensor if pos is None else tensor + pos | |
| def forward_post( | |
| self, | |
| src, | |
| src_mask: Optional[Tensor] = None, | |
| src_key_padding_mask: Optional[Tensor] = None, | |
| pos: Optional[Tensor] = None, | |
| ): | |
| q = k = self.with_pos_embed(src, pos) | |
| src2 = self.self_attn( | |
| q, | |
| k, | |
| value=src, | |
| attn_mask=src_mask, | |
| key_padding_mask=src_key_padding_mask)[0] | |
| src = src + self.dropout1(src2) | |
| src = self.norm1(src) | |
| src2 = self.linear2(self.dropout(self.activation(self.linear1(src)))) | |
| src = src + self.dropout2(src2) | |
| src = self.norm2(src) | |
| return src | |
| def forward_pre( | |
| self, | |
| src, | |
| src_mask: Optional[Tensor] = None, | |
| src_key_padding_mask: Optional[Tensor] = None, | |
| pos: Optional[Tensor] = None, | |
| ): | |
| src2 = self.norm1(src) | |
| q = k = self.with_pos_embed(src2, pos) | |
| src2 = self.self_attn( | |
| q, | |
| k, | |
| value=src2, | |
| attn_mask=src_mask, | |
| key_padding_mask=src_key_padding_mask)[0] | |
| src = src + self.dropout1(src2) | |
| src2 = self.norm2(src) | |
| src2 = self.linear2(self.dropout(self.activation(self.linear1(src2)))) | |
| src = src + self.dropout2(src2) | |
| return src | |
| def forward( | |
| self, | |
| src, | |
| src_mask: Optional[Tensor] = None, | |
| src_key_padding_mask: Optional[Tensor] = None, | |
| pos: Optional[Tensor] = None, | |
| ): | |
| if self.normalize_before: | |
| return self.forward_pre(src, src_mask, src_key_padding_mask, pos) | |
| return self.forward_post(src, src_mask, src_key_padding_mask, pos) | |
| class SelfAttentionLayer(nn.Module): | |
| def __init__(self, | |
| d_model, | |
| nhead, | |
| dropout=0.0, | |
| activation='relu', | |
| normalize_before=False): | |
| super().__init__() | |
| self.self_attn = nn.MultiheadAttention(d_model, nhead, dropout=dropout) | |
| self.norm = nn.LayerNorm(d_model) | |
| self.dropout = nn.Dropout(dropout) | |
| self.activation = _get_activation_fn(activation) | |
| self.normalize_before = normalize_before | |
| self._reset_parameters() | |
| def _reset_parameters(self): | |
| for p in self.parameters(): | |
| if p.dim() > 1: | |
| nn.init.xavier_uniform_(p) | |
| def with_pos_embed(self, tensor, pos: Optional[Tensor]): | |
| return tensor if pos is None else tensor + pos | |
| def forward_post(self, | |
| tgt, | |
| tgt_mask: Optional[Tensor] = None, | |
| tgt_key_padding_mask: Optional[Tensor] = None, | |
| query_pos: Optional[Tensor] = None): | |
| q = k = self.with_pos_embed(tgt, query_pos) | |
| tgt2 = self.self_attn( | |
| q, | |
| k, | |
| value=tgt, | |
| attn_mask=tgt_mask, | |
| key_padding_mask=tgt_key_padding_mask)[0] | |
| tgt = tgt + self.dropout(tgt2) | |
| tgt = self.norm(tgt) | |
| return tgt | |
| def forward_pre(self, | |
| tgt, | |
| tgt_mask: Optional[Tensor] = None, | |
| tgt_key_padding_mask: Optional[Tensor] = None, | |
| query_pos: Optional[Tensor] = None): | |
| tgt2 = self.norm(tgt) | |
| q = k = self.with_pos_embed(tgt2, query_pos) | |
| tgt2 = self.self_attn( | |
| q, | |
| k, | |
| value=tgt2, | |
| attn_mask=tgt_mask, | |
| key_padding_mask=tgt_key_padding_mask)[0] | |
| tgt = tgt + self.dropout(tgt2) | |
| return tgt | |
| def forward(self, | |
| tgt, | |
| tgt_mask: Optional[Tensor] = None, | |
| tgt_key_padding_mask: Optional[Tensor] = None, | |
| query_pos: Optional[Tensor] = None): | |
| if self.normalize_before: | |
| return self.forward_pre(tgt, tgt_mask, tgt_key_padding_mask, | |
| query_pos) | |
| return self.forward_post(tgt, tgt_mask, tgt_key_padding_mask, | |
| query_pos) | |
| class CrossAttentionLayer(nn.Module): | |
| def __init__(self, | |
| d_model, | |
| nhead, | |
| dropout=0.0, | |
| activation='relu', | |
| normalize_before=False): | |
| super().__init__() | |
| self.multihead_attn = nn.MultiheadAttention( | |
| d_model, nhead, dropout=dropout) | |
| self.norm = nn.LayerNorm(d_model) | |
| self.dropout = nn.Dropout(dropout) | |
| self.activation = _get_activation_fn(activation) | |
| self.normalize_before = normalize_before | |
| self._reset_parameters() | |
| def _reset_parameters(self): | |
| for p in self.parameters(): | |
| if p.dim() > 1: | |
| nn.init.xavier_uniform_(p) | |
| def with_pos_embed(self, tensor, pos: Optional[Tensor]): | |
| return tensor if pos is None else tensor + pos | |
| def forward_post(self, | |
| tgt, | |
| memory, | |
| memory_mask: Optional[Tensor] = None, | |
| memory_key_padding_mask: Optional[Tensor] = None, | |
| pos: Optional[Tensor] = None, | |
| query_pos: Optional[Tensor] = None): | |
| tgt2, avg_attn = self.multihead_attn( | |
| query=self.with_pos_embed(tgt, query_pos), | |
| key=self.with_pos_embed(memory, pos), | |
| value=memory, | |
| attn_mask=memory_mask, | |
| key_padding_mask=memory_key_padding_mask) | |
| tgt = tgt + self.dropout(tgt2) | |
| tgt = self.norm(tgt) | |
| return tgt, avg_attn | |
| def forward_pre(self, | |
| tgt, | |
| memory, | |
| memory_mask: Optional[Tensor] = None, | |
| memory_key_padding_mask: Optional[Tensor] = None, | |
| pos: Optional[Tensor] = None, | |
| query_pos: Optional[Tensor] = None): | |
| tgt2 = self.norm(tgt) | |
| tgt2, avg_attn = self.multihead_attn( | |
| query=self.with_pos_embed(tgt2, query_pos), | |
| key=self.with_pos_embed(memory, pos), | |
| value=memory, | |
| attn_mask=memory_mask, | |
| key_padding_mask=memory_key_padding_mask) | |
| tgt = tgt + self.dropout(tgt2) | |
| return tgt, avg_attn | |
| def forward(self, | |
| tgt, | |
| memory, | |
| memory_mask: Optional[Tensor] = None, | |
| memory_key_padding_mask: Optional[Tensor] = None, | |
| pos: Optional[Tensor] = None, | |
| query_pos: Optional[Tensor] = None): | |
| if self.normalize_before: | |
| return self.forward_pre(tgt, memory, memory_mask, | |
| memory_key_padding_mask, pos, query_pos) | |
| return self.forward_post(tgt, memory, memory_mask, | |
| memory_key_padding_mask, pos, query_pos) | |
| class FFNLayer(nn.Module): | |
| def __init__(self, | |
| d_model, | |
| dim_feedforward=2048, | |
| dropout=0.0, | |
| activation='relu', | |
| normalize_before=False): | |
| super().__init__() | |
| # Implementation of Feedforward model | |
| self.linear1 = nn.Linear(d_model, dim_feedforward) | |
| self.dropout = nn.Dropout(dropout) | |
| self.linear2 = nn.Linear(dim_feedforward, d_model) | |
| self.norm = nn.LayerNorm(d_model) | |
| self.activation = _get_activation_fn(activation) | |
| self.normalize_before = normalize_before | |
| self._reset_parameters() | |
| def _reset_parameters(self): | |
| for p in self.parameters(): | |
| if p.dim() > 1: | |
| nn.init.xavier_uniform_(p) | |
| def with_pos_embed(self, tensor, pos: Optional[Tensor]): | |
| return tensor if pos is None else tensor + pos | |
| def forward_post(self, tgt): | |
| tgt2 = self.linear2(self.dropout(self.activation(self.linear1(tgt)))) | |
| tgt = tgt + self.dropout(tgt2) | |
| tgt = self.norm(tgt) | |
| return tgt | |
| def forward_pre(self, tgt): | |
| tgt2 = self.norm(tgt) | |
| tgt2 = self.linear2(self.dropout(self.activation(self.linear1(tgt2)))) | |
| tgt = tgt + self.dropout(tgt2) | |
| return tgt | |
| def forward(self, tgt): | |
| if self.normalize_before: | |
| return self.forward_pre(tgt) | |
| return self.forward_post(tgt) | |
| class MLP(nn.Module): | |
| """Very simple multi-layer perceptron (also called FFN)""" | |
| def __init__(self, input_dim, hidden_dim, output_dim, num_layers): | |
| super().__init__() | |
| self.num_layers = num_layers | |
| h = [hidden_dim] * (num_layers - 1) | |
| self.layers = nn.ModuleList( | |
| nn.Linear(n, k) for n, k in zip([input_dim] + h, h + [output_dim])) | |
| def forward(self, x): | |
| for i, layer in enumerate(self.layers): | |
| x = F.relu(layer(x)) if i < self.num_layers - 1 else layer(x) | |
| return x | |
| def get_norm(norm, out_channels): | |
| """ | |
| Args: | |
| norm (str or callable): either one of BN, SyncBN, FrozenBN, GN; | |
| or a callable that takes a channel number and returns | |
| the normalization layer as a nn.Module. | |
| Returns: | |
| nn.Module or None: the normalization layer | |
| """ | |
| if norm is None: | |
| return None | |
| if isinstance(norm, str): | |
| if len(norm) == 0: | |
| return None | |
| norm = { | |
| 'BN': nn.BatchNorm2d, | |
| 'GN': lambda channels: nn.GroupNorm(32, channels), | |
| }[norm] | |
| return norm(out_channels) | |
| def _get_clones(module, N): | |
| return nn.ModuleList([copy.deepcopy(module) for i in range(N)]) | |
| def _get_activation_fn(activation): | |
| """Return an activation function given a string.""" | |
| if activation == 'relu': | |
| return F.relu | |
| if activation == 'gelu': | |
| return F.gelu | |
| if activation == 'glu': | |
| return F.glu | |
| raise RuntimeError(f'activation should be relu/gelu, not {activation}.') | |