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CortexMAE

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  [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/MedARC-AI/CortexMAE/blob/main/notebooks/quickstart.ipynb)
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  [![Preprint](https://img.shields.io/badge/arXiv-2510.13768-green?logo=bookstack&logoColor=white)](https://arxiv.org/abs/2510.13768)
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- [![Discord](https://dcbadge.limes.pink/api/server/https://discord.gg/tVR4TWnRM9?style=flat)](https://discord.gg/tVR4TWnRM9)
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- [![Code License](https://img.shields.io/badge/Code_License-Apache_2.0-blue.svg)](https://github.com/MedARC-AI/CortexMAE/blob/main/LICENSE)
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  [![Model License](https://img.shields.io/badge/Model_License-CC_BY--NC_4.0-lightgrey)](https://creativecommons.org/licenses/by-nc/4.0/deed.en)
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  CortexMAE is an fMRI foundation model trained on 2.1K hours of fMRI data from the [Human Connectome Project](https://www.humanconnectome.org/study/hcp-young-adult/overview) using the [masked autoencoder](https://arxiv.org/abs/2205.09113) framework. We release a family of models trained with different fMRI input representations:
 
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  [![Open In Colab](https://colab.research.google.com/assets/colab-badge.svg)](https://colab.research.google.com/github/MedARC-AI/CortexMAE/blob/main/notebooks/quickstart.ipynb)
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  [![Preprint](https://img.shields.io/badge/arXiv-2510.13768-green?logo=bookstack&logoColor=white)](https://arxiv.org/abs/2510.13768)
 
 
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  [![Model License](https://img.shields.io/badge/Model_License-CC_BY--NC_4.0-lightgrey)](https://creativecommons.org/licenses/by-nc/4.0/deed.en)
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  CortexMAE is an fMRI foundation model trained on 2.1K hours of fMRI data from the [Human Connectome Project](https://www.humanconnectome.org/study/hcp-young-adult/overview) using the [masked autoencoder](https://arxiv.org/abs/2205.09113) framework. We release a family of models trained with different fMRI input representations: