kierandidi commited on
Commit
3b14c84
·
verified ·
1 Parent(s): 866eab7

Publication layout: model card, provenance, examples, assets

Browse files
Files changed (1) hide show
  1. README.md +3 -3
README.md CHANGED
@@ -33,7 +33,7 @@ This repository is the [Diffusers](https://github.com/huggingface/diffusers) rel
33
  |---|---|
34
  | **Model** | Joint sequence–structure generation with a matched flow transformer and autoencoder |
35
  | **Pipeline** | `RFD4ProteinaPipeline`: `transformer` + `autoencoder` + `scheduler` |
36
- | **Inputs** | Annotated CIF structures, prepared with [`rfd4-proteina-prep`](https://github.com/baker-laboratory/rfd4-proteina-prep) |
37
  | **Outputs** | Atom37 coordinates and residue identities, written back to annotated CIF |
38
  | **Weights** | EMA weights, 434.3 million parameters, stored in FP32 (1.74 GB); runs in BF16 |
39
  | **Sampler** | Released `thinking_medium` recipe: 60 steps, 185 trunk passes |
@@ -43,7 +43,7 @@ This repository is the [Diffusers](https://github.com/huggingface/diffusers) rel
43
  ## Quickstart
44
 
45
  ```bash
46
- pip install diffusers rfd4-proteina-prep
47
  ```
48
 
49
  ```python
@@ -95,7 +95,7 @@ Each `examples/<name>/` folder holds the AtomWorks Studio input (`input.cif`), t
95
 
96
  </details>
97
 
98
- These examples demonstrate the conditioning workflow. They are not experimental binding or catalytic-activity results, and example selection does not establish biological design quality. `examples/examples.json` lists the sampling task of each input. To reproduce them, run `examples/run_examples.py` from the [`rfd4-proteina-prep`](https://github.com/baker-laboratory/rfd4-proteina-prep) repository.
99
 
100
  ## Precision and speed
101
 
 
33
  |---|---|
34
  | **Model** | Joint sequence–structure generation with a matched flow transformer and autoencoder |
35
  | **Pipeline** | `RFD4ProteinaPipeline`: `transformer` + `autoencoder` + `scheduler` |
36
+ | **Inputs** | Annotated CIF structures, prepared with [`rfd4-proteina-prep`](https://huggingface.co/nvidia/RFD4-Proteina-prep) |
37
  | **Outputs** | Atom37 coordinates and residue identities, written back to annotated CIF |
38
  | **Weights** | EMA weights, 434.3 million parameters, stored in FP32 (1.74 GB); runs in BF16 |
39
  | **Sampler** | Released `thinking_medium` recipe: 60 steps, 185 trunk passes |
 
43
  ## Quickstart
44
 
45
  ```bash
46
+ pip install diffusers git+https://huggingface.co/nvidia/RFD4-Proteina-prep
47
  ```
48
 
49
  ```python
 
95
 
96
  </details>
97
 
98
+ These examples demonstrate the conditioning workflow. They are not experimental binding or catalytic-activity results, and example selection does not establish biological design quality. `examples/examples.json` lists the sampling task of each input. To reproduce them, run `examples/run_examples.py` from the [`rfd4-proteina-prep`](https://huggingface.co/nvidia/RFD4-Proteina-prep) repository.
99
 
100
  ## Precision and speed
101