Align model card with OFoldX

README.md

@@ -10,13 +10,7 @@ pipeline_tag: other
 
 # AlphaFold 2
 
-This repository contains **oteam/alphafold2-initial-guess**: `model_1_ptm with initial-guess preparation`, converted from the [official parameter archive](https://storage.googleapis.com/alphafold/alphafold_params_2022-12-06.tar).
-
-
-Native PyTorch implementation of AlphaFold 2 monomer, monomer-pTM, and
-AlphaFold-Multimer for OFoldX, including the released five-model CASP14
-eight-ensemble protocol and the monomer/pTM initial-guess evaluator used by
-PXDesign.
+Pre-trained model for protein structure prediction from amino-acid sequences, multiple-sequence alignments, and optional structural templates.
 
 ## Disclaimer
 
@@ -67,6 +61,10 @@ complexes.
 
 ### Links
 
+- **Checkpoint**: `model_1_ptm with initial-guess preparation`, converted from [official parameter archive](https://storage.googleapis.com/alphafold/alphafold_params_2022-12-06.tar)
+- **Upstream license**: [CC BY 4.0](LICENSE)
+- **Upstream attribution**: AlphaFold 2 parameters © 2022 DeepMind Technologies Limited; [parameter license](https://github.com/google-deepmind/alphafold#model-parameters)
+- **Upstream source revision**: `c77e5d2a8961d1a353632c462914ff0a32a950f6`
 - **Code**: [ofoldx.models.alphafold2](https://github.com/OTeam-AI4S/OFoldX/tree/main/ofoldx/models/alphafold2)
 - **Paper**: [Highly accurate protein structure prediction with AlphaFold](https://doi.org/10.1038/s41586-021-03819-2)
 - **Multimer Paper**: [Protein complex prediction with AlphaFold-Multimer](https://doi.org/10.1101/2021.10.04.463034)
@@ -207,10 +205,12 @@ original models should be directed to the upstream AlphaFold authors.
 
 ## License
 
-AlphaFold 2 parameters are Copyright 2022 DeepMind Technologies Limited, distributed under [CC BY 4.0](LICENSE). Original parameters: [Google DeepMind AlphaFold](https://storage.googleapis.com/alphafold/alphafold_params_2022-12-06.tar); [upstream parameter licensing](https://github.com/google-deepmind/alphafold#model-parameters). The parameter license allows redistribution and adaptation, including commercial use, subject to attribution and the other license conditions.
+The model weights, implementation, configuration, and documentation distributed by OFoldX are licensed under the
+[GNU Affero General Public License](license.md).
 
-The OFoldX implementation is separately licensed under AGPL-3.0-or-later; see [license.md](license.md) and [license-faq.md](license-faq.md).
+For additional terms and clarifications, please refer to our [License FAQ](license-faq.md).
 
-OFoldX conversion remaps tensor names, layouts and vocabulary axes into the native Model and Processor format. These are modified parameter representations; the original weight terms remain applicable. No upstream endorsement is implied.
+```spdx
+SPDX-License-Identifier: AGPL-3.0-or-later
+```
 
-Upstream source revision: `c77e5d2a8961d1a353632c462914ff0a32a950f6`.