| { |
| "architecture": "boltz1", |
| "atom_feature_size": 389, |
| "atom_hidden_size": 128, |
| "atom_pair_hidden_size": 16, |
| "confidence": { |
| "add_pair_input_to_pair": true, |
| "add_single_input_to_single": true, |
| "add_single_to_pair_product": true, |
| "compute_pae": true, |
| "enabled": true, |
| "imitate_trunk": true, |
| "max_distance": 22.0, |
| "num_distogram_bins": 64, |
| "num_pae_bins": 64, |
| "num_pair_attention_heads": 16, |
| "num_pairformer_blocks": 48, |
| "num_pde_bins": 64, |
| "num_plddt_bins": 50, |
| "num_triangle_attention_heads": 4, |
| "pair_dropout": 0.25, |
| "ranking_plddt_weight": 4.0, |
| "ranking_ptm_weight": 1.0, |
| "triangle_attention_head_size": 32, |
| "update_single": true, |
| "use_single_diffusion": true |
| }, |
| "denoiser": { |
| "alignment_reverse_diff": true, |
| "atom_hidden_size": 128, |
| "atom_pair_hidden_size": 16, |
| "num_atom_attention_heads": 4, |
| "num_atom_decoder_blocks": 3, |
| "num_atom_encoder_blocks": 3, |
| "num_conditioning_transitions": 2, |
| "num_key_atoms": 128, |
| "num_query_atoms": 32, |
| "num_token_encoder_attention_heads": 16, |
| "num_token_encoder_blocks": 24, |
| "sigma_data": 16.0 |
| }, |
| "fourier_embedding_size": 256, |
| "input_embeddings": { |
| "num_atom_encoder_attention_heads": 4, |
| "num_atom_encoder_blocks": 3, |
| "pocket_feature_size": 4, |
| "use_atom_encoder": true, |
| "vocab_size": 72 |
| }, |
| "num_distogram_bins": 64, |
| "num_recycles": 4, |
| "pair_size": 128, |
| "relative_position_size": 139, |
| "sampler": { |
| "churn_rate": 0.605, |
| "max_noise_level": 160.0, |
| "min_churn_noise_level": 1.107, |
| "min_noise_level": 0.0004, |
| "noise_scale": 0.901, |
| "num_sampling_steps": 200, |
| "rho": 8.0, |
| "step_scale": 1.638 |
| }, |
| "single_size": 384, |
| "trunk": { |
| "msa_attention_head_size": 32, |
| "msa_dropout": 0.15, |
| "msa_pair_dropout": 0.25, |
| "msa_size": 64, |
| "msa_triangle_attention_head_size": 32, |
| "num_msa_attention_heads": 8, |
| "num_msa_blocks": 4, |
| "num_msa_triangle_attention_heads": 4, |
| "num_pair_attention_heads": 16, |
| "num_pairformer_blocks": 48, |
| "num_triangle_attention_heads": 4, |
| "outer_product_hidden_size": 32, |
| "pair_dropout": 0.25, |
| "triangle_attention_head_size": 32, |
| "update_single": true, |
| "use_paired_feature": false |
| }, |
| "use_msa": true |
| } |
|
|
