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odesign-protein-flex

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odesign-protein-flex
File size: 973 Bytes
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{
  "architecture": "odesign",
  "constraint_embeddings": {
    "dropout": 0.25,
    "hidden_size": 64,
    "max_distance": 50.75,
    "min_distance": 3.25,
    "num_blocks": 2,
    "num_distogram_bins": 39
  },
  "denoiser": {
    "atom_hidden_size": 128,
    "atom_pair_hidden_size": 16,
    "num_atom_decoder_attention_heads": 4,
    "num_atom_decoder_blocks": 3,
    "num_atom_encoder_attention_heads": 4,
    "num_atom_encoder_blocks": 3,
    "num_key_atoms": 128,
    "num_query_atoms": 32,
    "num_token_encoder_attention_heads": 16,
    "num_token_encoder_blocks": 24,
    "sigma_data": 16.0,
    "token_hidden_size": 768
  },
  "max_relative_chain": 2,
  "max_relative_residue": 32,
  "pair_size": 128,
  "pairwise": {
    "bond_hidden_size": 128,
    "num_distogram_bins": 64
  },
  "single_size": 384,
  "trunk": {
    "msa_dropout": 0.15,
    "num_msa_stages": 4,
    "num_pairformer_blocks": 48,
    "pair_dropout": 0.25,
    "pairformer_dropout": 0.25
  }
}