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| "architecture": "protenix_constraint", |
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| "confidence": { |
| "distance_bin_end": 52.0, |
| "distance_bin_start": 3.25, |
| "distance_bin_step": 1.25, |
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| "num_blocks": 4, |
| "num_pae_bins": 64, |
| "num_pair_attention_heads": 16, |
| "num_pde_bins": 64, |
| "num_plddt_bins": 50, |
| "num_resolved_bins": 2, |
| "num_triangle_attention_heads": 4, |
| "pairformer_dropout": 0.0, |
| "single_max_abs": 512.0, |
| "triangle_attention_head_size": 32, |
| "triangle_multiplication_hidden_size": 128 |
| }, |
| "constraints": true, |
| "denoiser": { |
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| "atom_pair_hidden_size": 16, |
| "num_atom_decoder_attention_heads": 4, |
| "num_atom_decoder_blocks": 3, |
| "num_atom_encoder_attention_heads": 4, |
| "num_atom_encoder_blocks": 3, |
| "num_key_atoms": 128, |
| "num_query_atoms": 32, |
| "num_token_encoder_attention_heads": 16, |
| "num_token_encoder_blocks": 24, |
| "sigma_data": 16.0, |
| "token_hidden_size": 768 |
| }, |
| "distogram": { |
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| }, |
| "esm": null, |
| "num_recycles": 10, |
| "pair_size": 128, |
| "relative_position_size": 139, |
| "sampler": { |
| "churn_rate": 0.8, |
| "max_noise_level": 160.0, |
| "min_churn_noise_level": 1.0, |
| "min_noise_level": 0.0004, |
| "noise_scale": 1.003, |
| "num_sampling_steps": 200, |
| "rho": 7.0, |
| "solver": "euler", |
| "step_scale": 1.5 |
| }, |
| "single_size": 384, |
| "template": null, |
| "trunk": { |
| "msa_attention_head_size": null, |
| "msa_dropout": 0.15, |
| "msa_expansion": 4, |
| "msa_outer_product_hidden_size": 32, |
| "msa_size": 64, |
| "msa_triangle_attention_head_size": 32, |
| "msa_triangle_multiplication_hidden_size": 128, |
| "num_msa_attention_heads": 8, |
| "num_msa_stages": 4, |
| "num_msa_triangle_attention_heads": 4, |
| "num_pair_attention_heads": 16, |
| "num_pairformer_blocks": 48, |
| "num_pairformer_triangle_attention_heads": 4, |
| "pair_dropout": 0.25, |
| "pairformer_dropout": 0.25, |
| "pairformer_expansion": 4, |
| "pairformer_triangle_attention_head_size": 32, |
| "pairformer_triangle_multiplication_hidden_size": 128 |
| } |
| } |
|
|
