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Oct 16

JWST observations of photodissociation regions III. Dust modelling at the illuminated edge of the Horsehead PDR

Carbonaceous nano-grains are a significant component of interstellar dust and dominate the mid-infrared emission of photodissociation regions (PDRs). We study the evolution of nano-grains across the illuminated edge of the Horsehead PDR, especially their abundance and size properties. This work is part of the Physics and Chemistry of PDR Fronts program studying dust and gas in PDRs with JWST. We use NIRCam+MIRI photometric bands and NIRSpec+MRS spectroscopy to map the illuminated edge. We model dust emission using the THEMIS dust model with the SOC radiative transfer code. Detailed modeling of high angular resolution JWST data allows us to obtain constraints on nano-grain properties. We find that diffuse ISM dust cannot account for the observed data, requiring evolved grains. A sharp density increase is observed at the illuminated edge, consistent with ALMA observations revealing a sharp transition between molecular and ionized gas. Although the PDR length could not be directly determined, we estimate an upper limit of approximately 0.015 pc. This implies a lower limit on small grain abundance (greater than 0.003), showing small grains are not depleted at the Horsehead edge, unlike in the Orion Bar. Our findings indicate a high-density environment and less steep size distribution for nano-grains at the illuminated edge versus the diffuse ISM. This implies nano-grain destruction mechanisms might be less efficient in the Horsehead's moderate-UV field than in more intense PDRs. These results support a model where nano-grain population recovery is slower in moderate-UV environments, leading to a unique dust size distribution at the edge of the Horsehead Nebula.

  • 22 authors
·
Oct 28, 2025

NILMFormer: Non-Intrusive Load Monitoring that Accounts for Non-Stationarity

Millions of smart meters have been deployed worldwide, collecting the total power consumed by individual households. Based on these data, electricity suppliers offer their clients energy monitoring solutions to provide feedback on the consumption of their individual appliances. Historically, such estimates have relied on statistical methods that use coarse-grained total monthly consumption and static customer data, such as appliance ownership. Non-Intrusive Load Monitoring (NILM) is the problem of disaggregating a household's collected total power consumption to retrieve the consumed power for individual appliances. Current state-of-the-art (SotA) solutions for NILM are based on deep-learning (DL) and operate on subsequences of an entire household consumption reading. However, the non-stationary nature of real-world smart meter data leads to a drift in the data distribution within each segmented window, which significantly affects model performance. This paper introduces NILMFormer, a Transformer-based architecture that incorporates a new subsequence stationarization/de-stationarization scheme to mitigate the distribution drift and that uses a novel positional encoding that relies only on the subsequence's timestamp information. Experiments with 4 real-world datasets show that NILMFormer significantly outperforms the SotA approaches. Our solution has been deployed as the backbone algorithm for EDF's (Electricit\'e De France) consumption monitoring service, delivering detailed insights to millions of customers about their individual appliances' power consumption. This paper appeared in KDD 2025.

  • 4 authors
·
Jun 6, 2025

Unveiling User Perceptions in the Generative AI Era: A Sentiment-Driven Evaluation of AI Educational Apps' Role in Digital Transformation of e-Teaching

The rapid integration of generative artificial intelligence into education has driven digital transformation in e-teaching, yet user perceptions of AI educational apps remain underexplored. This study performs a sentiment-driven evaluation of user reviews from top AI ed-apps on the Google Play Store to assess efficacy, challenges, and pedagogical implications. Our pipeline involved scraping app data and reviews, RoBERTa for binary sentiment classification, GPT-4o for key point extraction, and GPT-5 for synthesizing top positive/negative themes. Apps were categorized into seven types (e.g., homework helpers, math solvers, language tools), with overlaps reflecting multifunctional designs. Results indicate predominantly positive sentiments, with homework apps like Edu AI (95.9% positive) and Answer.AI (92.7%) leading in accuracy, speed, and personalization, while language/LMS apps (e.g., Teacher AI at 21.8% positive) lag due to instability and limited features. Positives emphasize efficiency in brainstorming, problem-solving, and engagement; negatives center on paywalls, inaccuracies, ads, and glitches. Trends show that homework helpers outperform specialized tools, highlighting AI's democratizing potential amid risks of dependency and inequity. The discussion proposes future ecosystems with hybrid AI-human models, VR/AR for immersive learning, and a roadmap for developers (adaptive personalization) and policymakers (monetization regulation for inclusivity). This underscores generative AI's role in advancing e-teaching by enabling ethical refinements that foster equitable, innovative environments. The full dataset is available here(https://github.com/erfan-nourbakhsh/GenAI-EdSent).

  • 2 authors
·
Dec 12, 2025 1

SN 2023ixf in the Pinwheel Galaxy M101: From Shock Breakout to the Nebular Phase

We present photometric and spectroscopic observations of SN 2023ixf covering from day one to 442 days after explosion. SN 2023ixf reached a peak V-band absolute magnitude of -18.2 pm 0.07, and light curves show that it is in the fast-decliner (IIL) subclass with a relatively short ``plateau'' phase (fewer than sim 70 days). Early-time spectra of SN 2023ixf exhibit strong, very narrow emission lines from ionized circumstellar matter (CSM), possibly indicating a Type IIn classification. But these flash/shock-ionization emission features faded after the first week and the spectrum evolved in a manner similar to that of typical Type II SNe, unlike the case of most genuine SNe~IIn in which the ejecta interact with CSM for an extended period of time and develop intermediate-width emission lines. We compare observed spectra of SN 2023ixf with various model spectra to understand the physics behind SN 2023ixf. Our nebular spectra (between 200-400 d) match best with the model spectra from a 15 rm M_{odot} progenitor which experienced enhanced mass loss a few years before explosion. A last-stage mass-loss rate of M = 0.01 rm M_{odot} yr^{-1} from the r1w6 model matches best with the early-time spectra, higher than M approx 2.4 times 10^{-3} rm M_{odot} yr^{-1} derived from the ionized H{alpha} luminosity at 1.58 d. We also use SN 2023ixf as a distance indicator and fit the light curves to derive the Hubble constant by adding SN 2023ixf to the existing sample; we obtain H_{0}=73.1^{+3.68}_{-3.50} km s^{-1} Mpc^{-1}, consistent with the results from SNe~Ia and many other independent methods.

  • 42 authors
·
Mar 18, 2025

How to Build the Virtual Cell with Artificial Intelligence: Priorities and Opportunities

The cell is arguably the most fundamental unit of life and is central to understanding biology. Accurate modeling of cells is important for this understanding as well as for determining the root causes of disease. Recent advances in artificial intelligence (AI), combined with the ability to generate large-scale experimental data, present novel opportunities to model cells. Here we propose a vision of leveraging advances in AI to construct virtual cells, high-fidelity simulations of cells and cellular systems under different conditions that are directly learned from biological data across measurements and scales. We discuss desired capabilities of such AI Virtual Cells, including generating universal representations of biological entities across scales, and facilitating interpretable in silico experiments to predict and understand their behavior using virtual instruments. We further address the challenges, opportunities and requirements to realize this vision including data needs, evaluation strategies, and community standards and engagement to ensure biological accuracy and broad utility. We envision a future where AI Virtual Cells help identify new drug targets, predict cellular responses to perturbations, as well as scale hypothesis exploration. With open science collaborations across the biomedical ecosystem that includes academia, philanthropy, and the biopharma and AI industries, a comprehensive predictive understanding of cell mechanisms and interactions has come into reach.

  • 42 authors
·
Oct 13, 2024

A Foundation Model for Spatial Proteomics

Foundation models have begun to transform image analysis by acting as pretrained generalist backbones that can be adapted to many tasks even when post-training data are limited, yet their impact on spatial proteomics, imaging that maps proteins at single-cell resolution, remains limited. Here, we introduce KRONOS, a foundation model built for spatial proteomics. KRONOS was trained in a self-supervised manner on over 47 million image patches covering 175 protein markers, 16 tissue types, and 8 fluorescence-based imaging platforms. We introduce key architectural adaptations to address the high-dimensional, multi-channel, and heterogeneous nature of multiplex imaging. We demonstrate that KRONOS learns biologically meaningful representations across multiple scales, ranging from cellular and microenvironment to tissue levels, enabling it to address diverse downstream tasks, including cell phenotyping, region classification, and patient stratification. Evaluated across 11 independent cohorts, KRONOS achieves state-of-the-art performance across cell phenotyping, treatment response prediction, and retrieval tasks, and is highly data-efficient. KRONOS also introduces the paradigm of segmentation-free patch-level processing for efficient and scalable spatial proteomics analysis, allowing cross-institutional comparisons, and as an image reverse search engine for spatial patterns. Together, these results position KRONOS as a flexible and scalable tool for spatial proteomics. The model is publicly accessible at https://github.com/mahmoodlab/KRONOS.

  • 60 authors
·
Jun 2, 2025

How Agents Ask for Permission: User Permissions for AI Agents, from Interfaces to Enforcement

As AI agents gain prevalance, users are increasingly exposed to the risks such systems entail. Prompt injection attacks, as well as hallucination, can cause agents to leak private information to third parties. As autonomous systems, agents also present the more active danger of performing sensitive tasks, such as bank transactions, without the user's intent or authorization. Recognizing this challenge, the agentic security community has developed numerous proposals for secure agentic systems. Much of this work has focused on product-level approaches, where agentic system developers determine and apply the same security policies and permissions to all users. Yet different users have different needs and preferences, necessitating support for user-level permissions policies in agentic AI systems. To understand how user-level permissions are handled in AI agent systems, we survey 21 proposals for agent permissions systems. From this review, we construct a taxonomy of how different systems specify user-level permissions policies, both at the user interface and internally; derive internal policies from user input; and enforce those policies at run-time. We then analyze five prominent commercial agents and compare their permissions handling to agentic permissions systems in the literature. We identify several high-level themes across the literature and commerical agents, as well as multiple gaps where future work is needed.

  • 2 authors
·
Jul 14

From Knowledge to Action: Outcomes of the 2025 Large Language Model (LLM) Hackathon for Applications in Materials Science and Chemistry

Large language models (LLMs) are rapidly changing how researchers in materials science and chemistry discover, organize, and act on scientific knowledge. This paper analyzes a broad set of community-developed LLM applications in an effort to identify emerging patterns in how these systems can be used across the scientific research lifecycle. We organize the projects into two complementary categories: Knowledge Infrastructure, systems that structure, retrieve, synthesize, and validate scientific information; and Action Systems, systems that execute, coordinate, or automate scientific work across computational and experimental environments. The submissions reveal a shift from single-purpose LLM tools toward integrated, multi-agent workflows that combine retrieval, reasoning, tool use, and domain-specific validation. Prominent themes include retrieval-augmented generation as grounding infrastructure, persistent structured knowledge representations, multimodal and multilingual scientific inputs, and early progress toward laboratory-integrated closed-loop systems. Together, these results suggest that LLMs are evolving from general-purpose assistants into composable infrastructure for scientific reasoning and action. This work provides a community snapshot of that transition and a practical taxonomy for understanding emerging LLM-enabled workflows in materials science and chemistry.

  • 353 authors
·
May 3

How Much Would a Clinician Edit This Draft? Evaluating LLM Alignment for Patient Message Response Drafting

Large language models (LLMs) show promise in drafting responses to patient portal messages, yet their integration into clinical workflows raises various concerns, including whether they would actually save clinicians time and effort in their portal workload. We investigate LLM alignment with individual clinicians through a comprehensive evaluation of the patient message response drafting task. We develop a novel taxonomy of thematic elements in clinician responses and propose a novel evaluation framework for assessing clinician editing load of LLM-drafted responses at both content and theme levels. We release an expert-annotated dataset and conduct large-scale evaluations of local and commercial LLMs using various adaptation techniques including thematic prompting, retrieval-augmented generation, supervised fine-tuning, and direct preference optimization. Our results reveal substantial epistemic uncertainty in aligning LLM drafts with clinician responses. While LLMs demonstrate capability in drafting certain thematic elements, they struggle with clinician-aligned generation in other themes, particularly question asking to elicit further information from patients. Theme-driven adaptation strategies yield improvements across most themes. Our findings underscore the necessity of adapting LLMs to individual clinician preferences to enable reliable and responsible use in patient-clinician communication workflows.

  • 7 authors
·
Jan 16

Empirical analysis of Binding Precedent efficiency in the Brazilian Supreme Court via Similar Case Retrieval

Binding precedents (S\'umulas Vinculantes) constitute a juridical instrument unique to the Brazilian legal system and whose objectives include the protection of the Federal Supreme Court against repetitive demands. Studies of the effectiveness of these instruments in decreasing the Court's exposure to similar cases, however, indicate that they tend to fail in such a direction, with some of the binding precedents seemingly creating new demands. We empirically assess the legal impact of five binding precedents, 11, 14, 17, 26 and 37, at the highest court level through their effects on the legal subjects they address. This analysis is only possible through the comparison of the Court's ruling about the precedents' themes before they are created, which means that these decisions should be detected through techniques of Similar Case Retrieval. The contributions of this article are therefore twofold: on the mathematical side, we compare the uses of different methods of Natural Language Processing -- TF-IDF, LSTM, BERT, and regex -- for Similar Case Retrieval, whereas on the legal side, we contrast the inefficiency of these binding precedents with a set of hypotheses that may justify their repeated usage. We observe that the deep learning models performed significantly worse in the specific Similar Case Retrieval task and that the reasons for binding precedents to fail in responding to repetitive demand are heterogeneous and case-dependent, making it impossible to single out a specific cause.

  • 6 authors
·
Jul 9, 2024

Disentangling lattice and electronic contributions to the metal-insulator transition from bulk vs. layer confined RNiO$_3$

In complex oxide materials, changes in electronic properties are often associated with changes in crystal structure, raising the question of the relative roles of the electronic and lattice effects in driving the metal-insulator transition. This paper presents a combined theoretical and experimental analysis of the dependence of the metal-insulator transition of NdNiO_3 on crystal structure, specifically comparing properties of bulk materials to one and two layer samples of NdNiO_3 grown between multiple electronically inert NdAlO_3 counterlayers in a superlattice. The comparison amplifies and validates a theoretical approach developed in previous papers and disentangles the electronic and lattice contributions, through an independent variation of each. In bulk NdNiO_3 the correlations are not strong enough to drive a metal-insulator transition by themselves: a lattice distortion is required. Ultra-thin films exhibit two additional electronic effects and one lattice-related effect. The electronic effects are quantum confinement, leading to dimensional reduction of the electronic Hamiltonian, and an increase in electronic bandwidth due to counterlayer induced bond angle changes. We find that the confinement effect is much more important. The lattice effect is an increase in stiffness due to the cost of propagation of the lattice disproportionation into the confining material.

  • 5 authors
·
Sep 30, 2018

WorldModelBench: Judging Video Generation Models As World Models

Video generation models have rapidly progressed, positioning themselves as video world models capable of supporting decision-making applications like robotics and autonomous driving. However, current benchmarks fail to rigorously evaluate these claims, focusing only on general video quality, ignoring important factors to world models such as physics adherence. To bridge this gap, we propose WorldModelBench, a benchmark designed to evaluate the world modeling capabilities of video generation models in application-driven domains. WorldModelBench offers two key advantages: (1) Against to nuanced world modeling violations: By incorporating instruction-following and physics-adherence dimensions, WorldModelBench detects subtle violations, such as irregular changes in object size that breach the mass conservation law - issues overlooked by prior benchmarks. (2) Aligned with large-scale human preferences: We crowd-source 67K human labels to accurately measure 14 frontier models. Using our high-quality human labels, we further fine-tune an accurate judger to automate the evaluation procedure, achieving 8.6% higher average accuracy in predicting world modeling violations than GPT-4o with 2B parameters. In addition, we demonstrate that training to align human annotations by maximizing the rewards from the judger noticeably improve the world modeling capability. The website is available at https://worldmodelbench-team.github.io.

  • 13 authors
·
Feb 27, 2025

LAMP 2.0: A Robust Multi-Robot SLAM System for Operation in Challenging Large-Scale Underground Environments

Search and rescue with a team of heterogeneous mobile robots in unknown and large-scale underground environments requires high-precision localization and mapping. This crucial requirement is faced with many challenges in complex and perceptually-degraded subterranean environments, as the onboard perception system is required to operate in off-nominal conditions (poor visibility due to darkness and dust, rugged and muddy terrain, and the presence of self-similar and ambiguous scenes). In a disaster response scenario and in the absence of prior information about the environment, robots must rely on noisy sensor data and perform Simultaneous Localization and Mapping (SLAM) to build a 3D map of the environment and localize themselves and potential survivors. To that end, this paper reports on a multi-robot SLAM system developed by team CoSTAR in the context of the DARPA Subterranean Challenge. We extend our previous work, LAMP, by incorporating a single-robot front-end interface that is adaptable to different odometry sources and lidar configurations, a scalable multi-robot front-end to support inter- and intra-robot loop closure detection for large scale environments and multi-robot teams, and a robust back-end equipped with an outlier-resilient pose graph optimization based on Graduated Non-Convexity. We provide a detailed ablation study on the multi-robot front-end and back-end, and assess the overall system performance in challenging real-world datasets collected across mines, power plants, and caves in the United States. We also release our multi-robot back-end datasets (and the corresponding ground truth), which can serve as challenging benchmarks for large-scale underground SLAM.

  • 12 authors
·
May 25, 2022

Stark effect of hydrogenic ions as a test of the indefinite-metric formalism of the eight-component relativistic wave equation for spin-$\frac{1}{2}$ particles

The eight-component relativistic wave equation for spin-1{2} particles of Robson and Staudte (FV1{2}), a Feshbach--Villars linearization of the Feynman--Gell-Mann equation, reproduces the Dirac hydrogenic spectrum with a doubled solution space and an indefinite inner product. Its exact Stark shifts must equal the Dirac ones; whether its indefinite-metric perturbation theory delivers them is not guaranteed. We compute the first- and second-order Stark shifts of the n=1--3 levels of hydrogenic ions from H to U^{91+} in the Schrödinger, Dirac and FV1{2} theories, evaluating all spectral sums, continuum included, by the Dalgarno--Lewis method. The FV1{2} and Dirac shifts coincide level by level, to working precision at first order (closed-form roots) and to 45 significant figures at second order. Both ingredients are needed: without the explicit spin--field coupling the first-order roots become complex, and without the negative-norm states the (Zα)^2 coefficient is wrong. Norm sign and parity are locked in the doubled space: a potential lifting the 2s_{1/2}--2p_{1/2} degeneracy needs its own spin--gradient term, and shifts placed by hand on the κ-labeled states give a spurious imaginary linear Stark shift. The relativistic linear Stark effect is smaller by finite factors, but a second-moment sum rule shows the non-relativistic linear Stark strength is conserved, the missing part reappearing in singular (Zα)^{-2} second-order terms. For levels with a fine-structure partner, an exact intra-shell/regular split of the second-order shift gives the (Zα)^0 coefficients analytically and relates the π^2 terms of the (Zα)^2 coefficients to the singular ones. The Dirac weak/strong-field crossover for n=2 of hydrogen lies near 2.8~kV cm^{-1}, and the perturbative window set by the fine structure grows as Z^5.

  • 3 authors
·
Sep 30

CodeClash: Benchmarking Goal-Oriented Software Engineering

Current benchmarks for coding evaluate language models (LMs) on concrete, well-specified tasks such as fixing specific bugs or writing targeted tests. However, human programmers do not spend all day incessantly addressing isolated tasks. Instead, real-world software development is grounded in the pursuit of high-level goals, like improving user retention or reducing costs. Evaluating whether LMs can also iteratively develop code to better accomplish open-ended objectives without any explicit guidance remains an open challenge. To address this, we introduce CodeClash, a benchmark where LMs compete in multi-round tournaments to build the best codebase for achieving a competitive objective. Each round proceeds in two phases: agents edit their code, then their codebases compete head-to-head in a code arena that determines winners based on objectives like score maximization, resource acquisition, or survival. Whether it's writing notes, scrutinizing documentation, analyzing competition logs, or creating test suites, models must decide for themselves how to improve their codebases both absolutely and against their opponents. We run 1680 tournaments (25,200 rounds total) to evaluate 8 LMs across 6 arenas. Our results reveal that while models exhibit diverse development styles, they share fundamental limitations in strategic reasoning. Models also struggle with long-term codebase maintenance, as repositories become progressively messy and redundant. These limitations are stark: top models lose every round against expert human programmers. We open-source CodeClash to advance the study of autonomous, goal-oriented code development.

stanfordnlp Stanford NLP
·
Nov 2, 2025 1

ThousandWorlds: A benchmark for climate emulation of potentially habitable exoplanets

The search for life beyond Earth will depend on detecting faint signatures in the atmospheres of potentially habitable exoplanets. Interpreting those signatures requires understanding the host planet's climate: the same molecule may signal life on one planet and abiotic chemistry on another. Global climate models (GCMs) provide this understanding, but individual runs can require up to millions of core-hours and substantial domain expert time. Machine-learning emulators could remove this bottleneck, but progress has been limited by the absence of a curated, multi-model exoclimate dataset. We introduce ThousandWorlds, an ML-ready benchmark for exoclimate emulation and for the broader regime of low-data, multi-simulator, parameter-to-field regression. The dataset contains approximately 1800 simulations from five GCMs, mapping eight planet parameters to 3D atmospheric fields including temperature, humidity, winds, clouds, and radiation. Three nested subsets define progressively harder challenges: single-simulator regression, multi-simulator regression with complete observations, and multi-simulator regression with structured missingness. We propose two evaluation protocols: one for ranking methods, and one that measures performance relative to the disagreement between GCMs themselves. We evaluate seven baselines spanning simple methods, deep learning, and Gaussian processes. GP-based methods perform best, suggesting that ThousandWorlds exposes a regime where off-the-shelf deep learning does not yet succeed. Data: https://doi.org/10.57967/hf/8695. Code: https://github.com/edstevenson/ThousandWorlds.

  • 7 authors
·
Jun 15