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Oct 15

Semantic-decoupled Spatial Partition Guided Point-supervised Oriented Object Detection

Recent remote sensing tech advancements drive imagery growth, making oriented object detection rapid development, yet hindered by labor-intensive annotation for high-density scenes. Oriented object detection with point supervision offers a cost-effective solution for densely packed scenes in remote sensing, yet existing methods suffer from inadequate sample assignment and instance confusion due to rigid rule-based designs. To address this, we propose SSP (Semantic-decoupled Spatial Partition), a unified framework that synergizes rule-driven prior injection and data-driven label purification. Specifically, SSP introduces two core innovations: 1) Pixel-level Spatial Partition-based Sample Assignment, which compactly estimates the upper and lower bounds of object scales and mines high-quality positive samples and hard negative samples through spatial partitioning of pixel maps. 2) Semantic Spatial Partition-based Box Extraction, which derives instances from spatial partitions modulated by semantic maps and reliably converts them into bounding boxes to form pseudo-labels for supervising the learning of downstream detectors. Experiments on DOTA-v1.0 and others demonstrate SSP\' s superiority: it achieves 45.78% mAP under point supervision, outperforming SOTA method PointOBB-v2 by 4.10%. Furthermore, when integrated with ORCNN and ReDet architectures, the SSP framework achieves mAP values of 47.86% and 48.50%, respectively. The code is available at https://github.com/antxinyuan/ssp.

  • 5 authors
·
Jun 12, 2025

SCASRec: A Self-Correcting and Auto-Stopping Model for Generative Route List Recommendation

Route recommendation systems commonly adopt a multi-stage pipeline involving fine-ranking and re-ranking to produce high-quality ordered recommendations. However, this paradigm faces three critical limitations. First, there is a misalignment between offline training objectives and online metrics. Offline gains do not necessarily translate to online improvements. Actual performance must be validated through A/B testing, which may potentially compromise the user experience. Second, redundancy elimination relies on rigid, handcrafted rules that lack adaptability to the high variance in user intent and the unstructured complexity of real-world scenarios. Third, the strict separation between fine-ranking and re-ranking stages leads to sub-optimal performance. Since each module is optimized in isolation, the fine-ranking stage remains oblivious to the list-level objectives (e.g., diversity) targeted by the re-ranker, thereby preventing the system from achieving a jointly optimized global optimum. To overcome these intertwined challenges, we propose SCASRec (Self-Correcting and Auto-Stopping Recommendation), a unified generative framework that integrates ranking and redundancy elimination into a single end-to-end process. SCASRec introduces a stepwise corrective reward (SCR) to guide list-wise refinement by focusing on hard samples, and employs a learnable End-of-Recommendation (EOR) token to terminate generation adaptively when no further improvement is expected. Experiments on two large-scale, open-sourced route recommendation datasets demonstrate that SCASRec establishes an SOTA in offline and online settings. SCASRec has been fully deployed in a real-world navigation app, demonstrating its effectiveness.

  • 8 authors
·
May 7

KnowCoder: Coding Structured Knowledge into LLMs for Universal Information Extraction

In this paper, we propose KnowCoder, a Large Language Model (LLM) to conduct Universal Information Extraction (UIE) via code generation. KnowCoder aims to develop a kind of unified schema representation that LLMs can easily understand and an effective learning framework that encourages LLMs to follow schemas and extract structured knowledge accurately. To achieve these, KnowCoder introduces a code-style schema representation method to uniformly transform different schemas into Python classes, with which complex schema information, such as constraints among tasks in UIE, can be captured in an LLM-friendly manner. We further construct a code-style schema library covering over 30,000 types of knowledge, which is the largest one for UIE, to the best of our knowledge. To ease the learning process of LLMs, KnowCoder contains a two-phase learning framework that enhances its schema understanding ability via code pretraining and its schema following ability via instruction tuning. After code pretraining on around 1.5B automatically constructed data, KnowCoder already attains remarkable generalization ability and achieves relative improvements by 49.8% F1, compared to LLaMA2, under the few-shot setting. After instruction tuning, KnowCoder further exhibits strong generalization ability on unseen schemas and achieves up to 12.5% and 21.9%, compared to sota baselines, under the zero-shot setting and the low resource setting, respectively. Additionally, based on our unified schema representations, various human-annotated datasets can simultaneously be utilized to refine KnowCoder, which achieves significant improvements up to 7.5% under the supervised setting.

  • 17 authors
·
Mar 12, 2024

PerfMamba: Performance Analysis and Pruning of Selective State Space Models

Recent advances in sequence modeling have introduced selective SSMs as promising alternatives to Transformer architectures, offering theoretical computational efficiency and sequence processing advantages. A comprehensive understanding of selective SSMs in runtime behavior, resource utilization patterns, and scaling characteristics still remains unexplored, thus obstructing their optimal deployment and further architectural improvements. This paper presents a thorough empirical study of Mamba-1 and Mamba-2, systematically profiled for performance to assess the design principles that contribute to their efficiency in state-space modeling. A detailed analysis of computation patterns, memory access, I/O characteristics, and scaling properties was performed for sequence lengths ranging from 64 to 16384 tokens. Our findings show that the SSM component, a central part of the selective SSM architecture, demands a significant portion of computational resources compared to other components in the Mamba block. Based on these insights, we propose a pruning technique that selectively removes low-activity states within the SSM component, achieving measurable throughput and memory gains while maintaining accuracy within a moderate pruning regime. This approach results in performance improvements across varying sequence lengths, achieving a 1.14x speedup and reducing memory usage by 11.50\%. These results offer valuable guidance for designing more efficient SSM architectures that can be applied to a wide range of real-world applications.

  • 5 authors
·
Nov 27, 2025

Hybrid OCR-LLM Framework for Enterprise-Scale Document Information Extraction Under Copy-heavy Task

Information extraction from copy-heavy documents, characterized by massive volumes of structurally similar content, represents a critical yet understudied challenge in enterprise document processing. We present a systematic framework that strategically combines OCR engines with Large Language Models (LLMs) to optimize the accuracy-efficiency trade-off inherent in repetitive document extraction tasks. Unlike existing approaches that pursue universal solutions, our method exploits document-specific characteristics through intelligent strategy selection. We implement and evaluate 25 configurations across three extraction paradigms (direct, replacement, and table-based) on identity documents spanning four formats (PNG, DOCX, XLSX, PDF). Through table-based extraction methods, our adaptive framework delivers outstanding results: F1=1.0 accuracy with 0.97s latency for structured documents, and F1=0.997 accuracy with 0.6 s for challenging image inputs when integrated with PaddleOCR, all while maintaining sub-second processing speeds. The 54 times performance improvement compared with multimodal methods over naive approaches, coupled with format-aware routing, enables processing of heterogeneous document streams at production scale. Beyond the specific application to identity extraction, this work establishes a general principle: the repetitive nature of copy-heavy tasks can be transformed from a computational burden into an optimization opportunity through structure-aware method selection.

  • 2 authors
·
Oct 11, 2025

Towards Open-Ended Visual Scientific Discovery with Sparse Autoencoders

Scientific archives now contain hundreds of petabytes of data across genomics, ecology, climate, and molecular biology that could reveal undiscovered patterns if systematically analyzed at scale. Large-scale, weakly-supervised datasets in language and vision have driven the development of foundation models whose internal representations encode structure (patterns, co-occurrences and statistical regularities) beyond their training objectives. Most existing methods extract structure only for pre-specified targets; they excel at confirmation but do not support open-ended discovery of unknown patterns. We ask whether sparse autoencoders (SAEs) can enable open-ended feature discovery from foundation model representations. We evaluate this question in controlled rediscovery studies, where the learned SAE features are tested for alignment with semantic concepts on a standard segmentation benchmark and compared against strong label-free alternatives on concept-alignment metrics. Applied to ecological imagery, the same procedure surfaces fine-grained anatomical structure without access to segmentation or part labels, providing a scientific case study with ground-truth validation. While our experiments focus on vision with an ecology case study, the method is domain-agnostic and applicable to models in other sciences (e.g., proteins, genomics, weather). Our results indicate that sparse decomposition provides a practical instrument for exploring what scientific foundation models have learned, an important prerequisite for moving from confirmation to genuine discovery.

  • 4 authors
·
Nov 21, 2025

SIDInspector: A Mapping-First Diagnostic Resource for Semantic-ID Tokenizers

Semantic-ID (SID) tokenizers are increasingly reused as standalone artifacts in generative recommendation: an exported item-to-code mapping becomes the address space that a later sequence generator must use. These mappings rarely come with a common inspection interface, so coverage gaps, full-code aliasing, behaviorally weak prefixes, tail compression, and prefix fan-out are often found only after downstream training. We present SIDInspector, a mapping-first diagnostic resource for SID tokenizer artifacts. SIDInspector defines a small adapter contract over item mappings, metadata, interactions, and optional generator traces; validates the contract; and reports mapping-level probes for utilization, aliasing, neighborhood alignment, popularity allocation, and structural cost, with hooks for temporal churn and generator traces. SIDInspector characterizes exported mappings independently of downstream leaderboard scores. The release covers four tokenizer lines: GRID-style RQ-KMeans under two capacity settings and a bounded ReSID/GAOQ export in a same-item Musical protocol, plus released LETTER and LC-Rec item-index artifacts. In that protocol, D2 aliasing falls from 0.977 to 0.779 under added GRID-style capacity and to 0.000 for ReSID/GAOQ, while D3 remains below a deterministic category-prefix control (0.055-0.154 versus 0.447). SIDInspector exposes capacity, addressability, and behavioral prefix alignment as distinct artifact properties before method-level evaluation. Additional domain checks show the same diagnostic distinction. Bounded fixed-reranker probes connect prefix alignment to candidate exposure, while final ranking quality remains a downstream model question.

  • 4 authors
·
Aug 10

ScalSelect: Scalable Training-Free Multimodal Data Selection for Efficient Visual Instruction Tuning

Large-scale Visual Instruction Tuning (VIT) has become a key paradigm for advancing the performance of vision-language models (VLMs) across various multimodal tasks. However, training on the large-scale datasets is computationally expensive and inefficient due to redundancy in the data, which motivates the need for multimodal data selection to improve training efficiency. Existing data selection methods for VIT either require costly training or gradient computation. Training-free alternatives often depend on proxy models or datasets, instruction-agnostic representations, and pairwise similarity with quadratic complexity, limiting scalability and representation fidelity. In this work, we propose ScalSelect, a scalable training-free multimodal data selection method with linear-time complexity with respect to the number of samples, eliminating the need for external models or auxiliary datasets. ScalSelect first constructs sample representations by extracting visual features most attended by instruction tokens in the target VLM, capturing instruction-relevant information. It then identifies samples whose representations best approximate the dominant subspace of the full dataset representations, enabling scalable importance scoring without pairwise comparisons. Extensive experiments across multiple VLMs, datasets, and selection budgets demonstrate that ScalSelect achieves over 97.5% of the performance of training on the full dataset using only 16% of the data, and even outperforms full-data training in some settings. The code is available at https://github.com/ChangtiWu/ScalSelect{ScalSelect}.

TASER: Table Agents for Schema-guided Extraction and Recommendation

Real-world financial documents report essential information about an entity's financial holdings that can span millions of different financial instrument types. Yet, these details are often buried in messy, multi-page, fragmented tables - for example, 99.4% of the tables in our dataset have no bounding boxes with the maximum number of rows amounting to 426 per table across 44 pages. To tackle these unique challenges from real-world tables, we present a continuously learning, agentic table extraction system, TASER (Table Agents for Schema-guided Extraction and Recommendation) that extracts highly unstructured, multi-page, heterogeneous tables into normalized, schema-conforming outputs. Our table agents execute on table detection, classification, extraction, and recommendations by leveraging an initial schema. Then, our Recommender Agent reviews the outputs, recommends schema revisions, and decides on the final recommendations, enabling TASER to outperform existing table detection models such as Table Transformer by 10.1%. Within this continuous learning process, we highlight that larger batch sizes result in a 104.3% increase in schema recommendations that are actionable and utilized, resulting in a 9.8% increase in extracted holdings - highlighting the importance of a continuous learning process. To train TASER, we have manually labeled 22,584 pages (28,150,449 tokens), 3,213 tables for $731,685,511,687 of holdings culminating in one of the first real financial table datasets. We release our dataset TASERTab to enable the research community to access real-world financial tables and outputs. Our results highlight the promise of agentic, schema-guided extraction systems for robust understanding of real-world financial tables.

  • 5 authors
·
Aug 18, 2025

A Controlled Candidate-Set Benchmark for Offline Satellite-Security Plan Decomposition

Some security-development settings require local models that map an objective to an ordered, checkable plan. We present a low-rank decomposition adapter and release a case-disjoint corpus with 24 authored decompositions and 83 derived next-step examples across 24 satellite-security cases. To prevent reference-plan leakage, prompts contain one objective and eight shuffled SPARTA candidates. The evaluation candidate sets are constructed with oracle inclusion of every reference technique, so this study measures selection from a controlled set, not retrieval. On six fixed cases and five decoding seeds, mean scores vary across adapters and prompted Qwen2.5 baselines; a separate greedy check over three adapter training seeds shows non-negligible training variance. A 24-fold greedy leave-one-case-out control at the two compact sizes likewise shows tradeoffs: at 1.5B, adapter precision is 0.583 against 0.480 for two-shot prompting, while recall is 0.586 against 0.660. Case-resampling intervals for adapter precision relative to the strongest prompted baseline cross zero at 1.5B and 7B. The adapter is also substantially more format-compliant, which prevents attributing all score differences to selection. Autoregressive next-step accuracy is 0.08, 0.06, and 0.29 at 0.5B, 1.5B, and 7B. We therefore offer the formulation, leakage-controlled dataset, reproducibility package, and descriptive analysis as a proof of concept, not evidence of a reliable stand-alone decomposition system or a general adapter advantage. A separate diagnostic tests contract reuse.

  • 3 authors
·
Jul 28

SCP-116K: A High-Quality Problem-Solution Dataset and a Generalized Pipeline for Automated Extraction in the Higher Education Science Domain

Recent breakthroughs in large language models (LLMs) exemplified by the impressive mathematical and scientific reasoning capabilities of the o1 model have spotlighted the critical importance of high-quality training data in advancing LLM performance across STEM disciplines. While the mathematics community has benefited from a growing body of curated datasets, the scientific domain at the higher education level has long suffered from a scarcity of comparable resources. To address this gap, we present SCP-116K, a new large-scale dataset of 116,756 high-quality problem-solution pairs, automatically extracted from heterogeneous sources using a streamlined and highly generalizable pipeline. Our approach involves stringent filtering to ensure the scientific rigor and educational level of the extracted materials, while maintaining adaptability for future expansions or domain transfers. By openly releasing both the dataset and the extraction pipeline, we seek to foster research on scientific reasoning, enable comprehensive performance evaluations of new LLMs, and lower the barrier to replicating the successes of advanced models like o1 in the broader science community. We believe SCP-116K will serve as a critical resource, catalyzing progress in high-level scientific reasoning tasks and promoting further innovations in LLM development. The dataset and code are publicly available at https://github.com/AQA6666/SCP-116K-open.

  • 8 authors
·
Jan 26, 2025

EchoCoT: Extracting Hidden Chain-of-Thought from Large Reasoning Models

Hidden chain-of-thought (CoT) traces, especially those from frontier proprietary large reasoning models (LRMs), are valuable model assets. Yet whether these hidden CoTs can be directly extracted from black-box models remains largely unexplored. In this work, we systematically study whether hidden CoTs can be extracted near-verbatim from black-box LRMs through API interactions. We identify a previously overlooked reasoning replay surface between tool calls and develop EchoCoT, a multi-step attack that iteratively extracts hidden CoTs using API-returned fidelity signals. We further develop an LLM-based optimization framework that automatically searches for an effective universal injection trajectory across various datasets. We evaluate EchoCoT on three open-source and five frontier proprietary LRMs. On open-source LRMs, EchoCoT achieves up to 66.4\% near-verbatim extraction success, with the extracted trace length within 10\% of the target and at least 90\% of tokens exactly matching the target CoT. The same injection trajectory also generalizes to unseen datasets, achieving up to 80\% extraction success under the same criterion. For tested frontier proprietary LRMs, a substantial fraction of extracted CoTs closely align with provider-reported reasoning lengths and available CoT summaries. EchoCoT can also extract very long CoTs: on Gemini-2.5, it extracts 33,463 tokens from a 32,948-token target. These results establish hidden-CoT extraction as a practical security risk and highlight the need to better protect hidden CoT assets.

  • 6 authors
·
Aug 19

0.1% Data Makes Segment Anything Slim

The formidable model size and demanding computational requirements of Segment Anything Model (SAM) have rendered it cumbersome for deployment on resource-constrained devices. Existing approaches for SAM compression typically involve training a new network from scratch, posing a challenging trade-off between compression costs and model performance. To address this issue, this paper introduces SlimSAM, a novel SAM compression method that achieves superior performance with remarkably low training costs. This is achieved by the efficient reuse of pre-trained SAMs through a unified pruning-distillation framework. To enhance knowledge inheritance from the original SAM, we employ an innovative alternate slimming strategy that partitions the compression process into a progressive procedure. Diverging from prior pruning techniques, we meticulously prune and distill decoupled model structures in an alternating fashion. Furthermore, a novel label-free pruning criterion is also proposed to align the pruning objective with the optimization target, thereby boosting the post-distillation after pruning. SlimSAM yields significant performance improvements while demanding over 10 times less training costs than any other existing methods. Even when compared to the original SAM-H, SlimSAM achieves approaching performance while reducing parameter counts to merely 0.9% (5.7M), MACs to 0.8% (21G), and requiring only 0.1% (10k) of the SAM training data. Code is available at url{http://github.com/czg1225/SlimSAM}.

  • 4 authors
·
Dec 8, 2023

MINER: Mining Multimodal Internal Representation for Efficient Retrieval

Visual document retrieval has become essential for accessing information in visually rich documents. Existing approaches fall into two camps. Late-interaction retrievers achieve strong quality through fine-grained token-level matching but store hundreds of vectors per page, incurring large index footprints and high serving costs. By contrast, dense single-vector retrievers retain storage and latency advantages but consistently lag in quality because they compress all information into a single final-layer embedding. In this work, we first conduct a layerwise diagnostic on single-vector retrievers, revealing that retrieval-relevant signal resides in internal representations. Motivated by these findings, we propose MINER (Mining Multimodal Internal RepreseNtation for Efficient Retrieval), a lightweight plug-in module that probes and fuses internal signals across transformer layers into a single compact embedding without modifying the backbone or sacrificing single-vector efficiency. The first Retrieval-Aligned Layer Probing stage attaches a lightweight probe at each layer, surfacing which dimensions carry retrieval-relevant information. The subsequent Adaptive Sparse Multi-Layer Fusion stage applies performance-adaptive neuron-level masking to the selected layers and fuses the surviving signals into the final dense vector. Across ViDoRe V1/V2/V3, MINER outperforms existing dense single-vector retrievers on the majority of benchmarks, with up to 4.5% nDCG@5 improvement over its corresponding backbone. Compared to strong late-interaction baselines, in some settings MINER substantially narrows the nDCG@5 gap to 0.2 while preserving the storage and serving advantages of dense retrieval.

5a-community New Ground AI
·
May 6

From Judgment to Interference: Early Stopping LLM Harmful Outputs via Streaming Content Monitoring

Though safety alignment has been applied to most large language models (LLMs), LLM service providers generally deploy a subsequent moderation as the external safety guardrail in real-world products. Existing moderators mainly practice a conventional full detection, which determines the harmfulness based on the complete LLM output, causing high service latency. Recent works pay more attention to partial detection where moderators oversee the generation midway and early stop the output if harmfulness is detected, but they directly apply moderators trained with the full detection paradigm to incomplete outputs, introducing a training-inference gap that lowers the performance. In this paper, we explore how to form a data-and-model solution that natively supports partial detection. For the data, we construct FineHarm, a dataset consisting of 29K prompt-response pairs with fine-grained annotations to provide reasonable supervision for token-level training. Then, we propose the streaming content monitor, which is trained with dual supervision of response- and token-level labels and can follow the output stream of LLM to make a timely judgment of harmfulness. Experiments show that SCM gains 0.95+ in macro F1 score that is comparable to full detection, by only seeing the first 18% of tokens in responses on average. Moreover, the SCM can serve as a pseudo-harmfulness annotator for improving safety alignment and lead to a higher harmlessness score than DPO.

  • 5 authors
·
Jun 11, 2025

VAREX: A Benchmark for Multi-Modal Structured Extraction from Documents

We introduce VAREX (VARied-schema EXtraction), a benchmark for evaluating multimodal foundation models on structured data extraction from government forms. VAREX employs a Reverse Annotation pipeline that programmatically fills PDF templates with synthetic values, producing deterministic ground truth validated through three-phase quality assurance. The benchmark comprises 1,777 documents with 1,771 unique schemas across three structural categories, each provided in four input modalities: plain text, layout-preserving text (whitespace-aligned to approximate column positions), document image, or both text and image combined. Unlike existing benchmarks that evaluate from a single input representation, VAREX provides four controlled modalities per document, enabling systematic ablation of how input format affects extraction accuracy -- a capability absent from prior benchmarks. We evaluate 20 models from frontier proprietary models to small open models, with particular attention to models <=4B parameters suitable for cost-sensitive and latency-constrained deployment. Results reveal that (1) below 4B parameters, structured output compliance -- not extraction capability -- is a dominant bottleneck; in particular, schema echo (models producing schema-conforming structure instead of extracted values) depresses scores by 45-65 pp (percentage points) in affected models; (2) extraction-specific fine-tuning at 2B yields +81 pp gains, demonstrating that the instruction-following deficit is addressable without scale; (3) layout-preserving text provides the largest accuracy gain (+3-18 pp), exceeding pixel-level visual cues; and (4) the benchmark most effectively discriminates models in the 60-95% accuracy band. Dataset and evaluation code are publicly available.

ibm-research IBM Research
·
Mar 16 2

BinaryAI: Binary Software Composition Analysis via Intelligent Binary Source Code Matching

While third-party libraries are extensively reused to enhance productivity during software development, they can also introduce potential security risks such as vulnerability propagation. Software composition analysis, proposed to identify reused TPLs for reducing such risks, has become an essential procedure within modern DevSecOps. As one of the mainstream SCA techniques, binary-to-source SCA identifies the third-party source projects contained in binary files via binary source code matching, which is a major challenge in reverse engineering since binary and source code exhibit substantial disparities after compilation. The existing binary-to-source SCA techniques leverage basic syntactic features that suffer from redundancy and lack robustness in the large-scale TPL dataset, leading to inevitable false positives and compromised recall. To mitigate these limitations, we introduce BinaryAI, a novel binary-to-source SCA technique with two-phase binary source code matching to capture both syntactic and semantic code features. First, BinaryAI trains a transformer-based model to produce function-level embeddings and obtain similar source functions for each binary function accordingly. Then by applying the link-time locality to facilitate function matching, BinaryAI detects the reused TPLs based on the ratio of matched source functions. Our experimental results demonstrate the superior performance of BinaryAI in terms of binary source code matching and the downstream SCA task. Specifically, our embedding model outperforms the state-of-the-art model CodeCMR, i.e., achieving 22.54% recall@1 and 0.34 MRR compared with 10.75% and 0.17 respectively. Additionally, BinaryAI outperforms all existing binary-to-source SCA tools in TPL detection, increasing the precision from 73.36% to 85.84% and recall from 59.81% to 64.98% compared with the well-recognized commercial SCA product.

  • 7 authors
·
Aug 25, 2024

Foundation Model-Driven Semantic Change Detection in Remote Sensing Imagery

Remote sensing (RS) change detection methods can extract critical information on surface dynamics and are an essential means for humans to understand changes in the earth's surface and environment. Among these methods, semantic change detection (SCD) can more effectively interpret the multi-class information contained in bi-temporal RS imagery, providing semantic-level predictions that support dynamic change monitoring. However, due to the limited semantic understanding capability of the model and the inherent complexity of the SCD tasks, existing SCD methods face significant challenges in both performance and paradigm complexity. In this paper, we propose PerASCD, a SCD method driven by RS foundation model PerA, designed to enhance the multi-scale semantic understanding and overall performance. We introduce a modular Cascaded Gated Decoder (CG-Decoder) that simplifies complex SCD decoding pipelines while promoting effective multi-level feature interaction and fusion. In addition, we propose a Soft Semantic Consistency Loss (SSCLoss) to mitigate the numerical instability commonly encountered during SCD training. We further explore the applicability of multiple existing RS foundation models on the SCD task when equipped with the proposed decoder. Experimental results demonstrate that our decoder not only effectively simplifies the paradigm of SCD, but also achieves seamless adaptation across various vision encoders. Our method achieves state-of-the-art (SOTA) performance on two public benchmark datasets, validating its effectiveness. The code is available at https://github.com/SathShen/PerASCD.git.

  • 8 authors
·
Feb 14

The NCS-Model: A seismic foundation model trained on the Norwegian repository of public data

We present the NCS-models, a family of seismic foundation models pretrained on a large share of full-stack seismic cubes from the Norwegian Continental Shelf (NCS) available through the public DISKOS database. The model weights are open-sourced for the wider geoscience community. Foundation models trained with large-scale self-supervision are emerging as a promising basis for automatic seismic interpretation. However, most existing seismic models rely on limited or proprietary datasets, and it remains unclear how well natural-image foundation models transfer to seismic data. Our goals are to develop basin-scale seismic foundation models, provide practical recipes for scalable 3D training, and quantify the effects of basin-targeted pretraining and token dimensionality on downstream interpretation performance. Using masked autoencoders with Vision Transformer backbones, we pretrain models on a DISKOS-derived corpus of 3D time- and depth-migrated seismic volumes. The NCS-model variants use 2D, 2.5D multi-view, and 3D tokenization within a matched training setup. Transfer is evaluated on interpretation benchmarks using frozen backbones and a simple k-nearest neighbor classifier. Baselines include an ImageNet-pretrained MAE, a frontier vision foundation model, and a globally pretrained seismic model. Natural-image pretrained models do not reliably transfer, reflecting the large domain gap between natural images and seismic data. Seismic pretraining is necessary for robust transfer, and large-scale basin-targeted pretraining yields further gains over a smaller globally pretrained seismic baseline. The NCS-models achieve the best overall performance without fine-tuning, while 2.5D tokenization offers the strongest accuracy-efficiency tradeoff and the embeddings support similarity search for interactive interpretation.

  • 6 authors
·
Mar 24

AICC: Parse HTML Finer, Make Models Better -- A 7.3T AI-Ready Corpus Built by a Model-Based HTML Parser

While web data quality is crucial for large language models, most curation efforts focus on filtering and deduplication,treating HTML-to-text extraction as a fixed pre-processing step. Existing web corpora rely on heuristic-based extractors like Trafilatura, which struggle to preserve document structure and frequently corrupt structured elements such as formulas, codes, and tables. We hypothesize that improving extraction quality can be as impactful as aggressive filtering strategies for downstream performance. We introduce MinerU-HTML, a novel extraction pipeline that reformulates content extraction as a sequence labeling problem solved by a 0.6B-parameter language model. Unlike text-density heuristics, MinerU-HTML leverages semantic understanding and employs a two-stage formatting pipeline that explicitly categorizes semantic elements before converting to Markdown. Crucially, its model-based approach is inherently scalable, whereas heuristic methods offer limited improvement pathways. On MainWebBench, our benchmark of 7,887 annotated web pages, MinerU-HTML achieves 81.8\% ROUGE-N F1 compared to Trafilatura's 63.6\%, with exceptional structured element preservation (90.9\% for code blocks, 94.0\% for formulas). Using MinerU-HTML, we construct AICC (AI-ready Common Crawl), a 7.3-trillion token multilingual corpus from two Common Crawl snapshots. In controlled pretraining experiments where AICC and Trafilatura-extracted TfCC undergo identical filtering, models trained on AICC (62B tokens) achieve 50.8\% average accuracy across 13 benchmarks, outperforming TfCC by 1.08pp-providing direct evidence that extraction quality significantly impacts model capabilities. AICC also surpasses RefinedWeb and FineWeb on key benchmarks. We publicly release MainWebBench, MinerU-HTML, and AICC, demonstrating that HTML extraction is a critical, often underestimated component of web corpus construction.

opendatalab OpenDataLab
·
Nov 20, 2025 2

LookWhen? Fast Video Recognition by Learning When, Where, and What to Compute

Transformers dominate video recognition. They split videos into tokens, and processing them has expensive superlinear computational cost. Yet videos are filled with redundancy, so we can question the need for this expense. We introduce LookWhen, a selector-extractor framework that factorizes video recognition into learning when, where, and what to compute. Our shallow selector gets a scaled-down video and quickly scores all tokens across space-time, while our deep extractor gets the top-K selected tokens to approximate full-video representations without actually processing all the tokens. A key challenge is defining effective supervision for selection and extraction. For selection pre-training, we introduce a score on representations that ranks tokens by uniqueness using a simple nearest-neighbor distance. For extraction pre-training, we distill both a video teacher and an image teacher, for which we normalize its frame-wise representations to learn what changes within videos. Through these strategies, our selector-extractor learns general and efficient representations for feature extraction or fine-tuning to a task. Through experiments on Kinetics-400, SSv2, Epic-Kitchens, Diving48, Jester, and Charades, we show that LookWhen achieves a better accuracy-computation trade-off than efficient models and upgraded baselines of similar size. LookWhen Pareto-dominates in accuracy-FLOPs on 9 of 12 cases (6 tasks x 2 settings) and roughly matches on 3. In accuracy-throughput, measuring time in practice, LookWhen is more efficient still at 6.7x faster than InternVideo2-B at equal accuracy.

  • 6 authors
·
May 6

SCOPE and SCION: A Benchmark and an Auditable Reference Pipeline for Schema Induction and Fusion from Text

Schema graphs are an upstream bottleneck of schema-grounded information extraction and knowledge graph construction, yet most extraction systems assume the schema is already available. We introduce SCOPE (Schema Construction and Ontology-induction Pipeline Evaluation), a train-text-only benchmark for corpus-to-schema induction and optional schema fusion from raw text, built from 24 public information extraction sources (15 RE and 9 EE) normalized into evaluation-only gold schema graphs; its core event-extraction target covers event types and within-event argument roles, with inter-event links reported separately. We present SCION (Schema Construction and Induction with Ontology Normalization), an auditable reference pipeline rather than a new extraction architecture; it constructs candidate spaces from train text and restricts naming, merging, filtering, validation, and conservative fusion to candidate-linked evidence under strict JSON contracts. On the SCOPE core suite, SCION-lite attains the highest F1 among released source-schema references, Text2Onto-style, LLM-only, and matched extract-then-aggregate baselines under Literal, Fuzzy, Continuous, and Graph schema-graph metrics, while the compact open-model SCION-RL variant reduces reliance on proprietary LLM schema engineers. These results are reported against normalized typed-edge targets rather than as claims that induced schemas surpass human ontology design; the release includes evidence-linked outputs, parse/fallback logs, candidate retention/merging logs, run manifests, code, and benchmark packages at https://github.com/wandugu/paper_scion.

  • 8 authors
·
May 19

Learning to Aggregate Multi-Scale Context for Instance Segmentation in Remote Sensing Images

The task of instance segmentation in remote sensing images, aiming at performing per-pixel labeling of objects at instance level, is of great importance for various civil applications. Despite previous successes, most existing instance segmentation methods designed for natural images encounter sharp performance degradations when they are directly applied to top-view remote sensing images. Through careful analysis, we observe that the challenges mainly come from the lack of discriminative object features due to severe scale variations, low contrasts, and clustered distributions. In order to address these problems, a novel context aggregation network (CATNet) is proposed to improve the feature extraction process. The proposed model exploits three lightweight plug-and-play modules, namely dense feature pyramid network (DenseFPN), spatial context pyramid (SCP), and hierarchical region of interest extractor (HRoIE), to aggregate global visual context at feature, spatial, and instance domains, respectively. DenseFPN is a multi-scale feature propagation module that establishes more flexible information flows by adopting inter-level residual connections, cross-level dense connections, and feature re-weighting strategy. Leveraging the attention mechanism, SCP further augments the features by aggregating global spatial context into local regions. For each instance, HRoIE adaptively generates RoI features for different downstream tasks. Extensive evaluations of the proposed scheme on iSAID, DIOR, NWPU VHR-10, and HRSID datasets demonstrate that the proposed approach outperforms state-of-the-arts under similar computational costs. Source code and pre-trained models are available at https://github.com/yeliudev/CATNet.

  • 6 authors
·
Nov 22, 2021

AIM 2025 Rip Current Segmentation (RipSeg) Challenge Report

This report presents an overview of the AIM 2025 RipSeg Challenge, a competition designed to advance techniques for automatic rip current segmentation in still images. Rip currents are dangerous, fast-moving flows that pose a major risk to beach safety worldwide, making accurate visual detection an important and underexplored research task. The challenge builds on RipVIS, the largest available rip current dataset, and focuses on single-class instance segmentation, where precise delineation is critical to fully capture the extent of rip currents. The dataset spans diverse locations, rip current types, and camera orientations, providing a realistic and challenging benchmark. In total, 75 participants registered for this first edition, resulting in 5 valid test submissions. Teams were evaluated on a composite score combining F_1, F_2, AP_{50}, and AP_{[50:95]}, ensuring robust and application-relevant rankings. The top-performing methods leveraged deep learning architectures, domain adaptation techniques, pretrained models, and domain generalization strategies to improve performance under diverse conditions. This report outlines the dataset details, competition framework, evaluation metrics, and final results, providing insights into the current state of rip current segmentation. We conclude with a discussion of key challenges, lessons learned from the submissions, and future directions for expanding RipSeg.

  • 27 authors
·
Aug 18, 2025

CE-SSL: Computation-Efficient Semi-Supervised Learning for ECG-based Cardiovascular Diseases Detection

The label scarcity problem is the main challenge that hinders the wide application of deep learning systems in automatic cardiovascular diseases (CVDs) detection using electrocardiography (ECG). Tuning pre-trained models alleviates this problem by transferring knowledge learned from large datasets to downstream small datasets. However, bottlenecks in computational efficiency and detection performance limit its clinical applications. It is difficult to improve the detection performance without significantly sacrificing the computational efficiency during model training. Here, we propose a computation-efficient semi-supervised learning paradigm (CE-SSL) for robust and computation-efficient CVDs detection using ECG. It enables a robust adaptation of pre-trained models on downstream datasets with limited supervision and high computational efficiency. First, a random-deactivation technique is developed to achieve robust and fast low-rank adaptation of pre-trained weights. Subsequently, we propose a one-shot rank allocation module to determine the optimal ranks for the update matrices of the pre-trained weights. Finally, a lightweight semi-supervised learning pipeline is introduced to enhance model performance by leveraging labeled and unlabeled data with high computational efficiency. Extensive experiments on four downstream datasets demonstrate that CE-SSL not only outperforms the state-of-the-art methods in multi-label CVDs detection but also consumes fewer GPU footprints, training time, and parameter storage space. As such, this paradigm provides an effective solution for achieving high computational efficiency and robust detection performance in the clinical applications of pre-trained models under limited supervision. Code and Supplementary Materials are available at https://github.com/KAZABANA/CE-SSL

  • 7 authors
·
Jun 20, 2024

Fisher-Guided Submodular Data Selection for Continual Pre-Training of Large Language Models

Data selection is already a central bottleneck in large-language-model training, where web-scale corpora are noisy and token budgets are finite. In continual pre-training (CPT), it becomes a forgetting-control problem: a poorly chosen target-domain corpus can overwrite capabilities encoded in the pretrained checkpoint. Existing CPT practice either scores candidates with parameter-agnostic scalars such as perplexity, or mitigates forgetting by spending many extra general-domain replay tokens. Neither strategy directly asks how training on a candidate will move the model parameters. We show that loss-based selection causes the post-CPT Fisher diagonal to drift downward on exactly the high-Fisher coordinates the pretrained model had committed to, while leaving low-Fisher coordinates largely untouched. This asymmetry exposes a parameter-space mechanism for catastrophic forgetting. Motivated by this observation, we propose a Fisher-aware CPT selector that decomposes each candidate's gradient into an anchor component, which measures perturbation along committed parameter directions, and a frontier component, which measures update capacity in unconstrained low-Fisher subspaces. We aggregate these signals with a log-determinant submodular objective and optimize it in a single pass using a scalable streaming data selection pipeline. On TinyLlama-1.1B and Llama-3.1-8B CPT over medical data, our selector improves target-domain quality while bounding forgetting on held-out pretraining benchmarks. Most importantly, it is substantially more token-efficient than forgetting-aware replay. 1B selected tokens already outperform the replay strategy trained with 10B tokens on both adaptation and forgetting, giving a 10x token-efficiency advantage.

  • 4 authors
·
Sep 30

Mamba-FCS: Joint Spatio- Frequency Feature Fusion, Change-Guided Attention, and SeK Loss for Enhanced Semantic Change Detection in Remote Sensing

Semantic Change Detection (SCD) from remote sensing imagery requires models balancing extensive spatial context, computational efficiency, and sensitivity to class-imbalanced land-cover transitions. While Convolutional Neural Networks excel at local feature extraction but lack global context, Transformers provide global modeling at high computational costs. Recent Mamba architectures based on state-space models offer compelling solutions through linear complexity and efficient long-range modeling. In this study, we introduce Mamba-FCS, a SCD framework built upon Visual State Space Model backbone incorporating, a Joint Spatio-Frequency Fusion block incorporating log-amplitude frequency domain features to enhance edge clarity and suppress illumination artifacts, a Change-Guided Attention (CGA) module that explicitly links the naturally intertwined BCD and SCD tasks, and a Separated Kappa (SeK) loss tailored for class-imbalanced performance optimization. Extensive evaluation on SECOND and Landsat-SCD datasets shows that Mamba-FCS achieves state-of-the-art metrics, 88.62% Overall Accuracy, 65.78% F_scd, and 25.50% SeK on SECOND, 96.25% Overall Accuracy, 89.27% F_scd, and 60.26% SeK on Landsat-SCD. Ablation analyses confirm distinct contributions of each novel component, with qualitative assessments highlighting significant improvements in SCD. Our results underline the substantial potential of Mamba architectures, enhanced by proposed techniques, setting a new benchmark for effective and scalable semantic change detection in remote sensing applications. The complete source code, configuration files, and pre-trained models will be publicly available upon publication.

  • 7 authors
·
Aug 11, 2025

DharmaOCR: Specialized Small Language Models for Structured OCR that outperform Open-Source and Commercial Baselines

This manuscript introduces DharmaOCR Full and Lite, a pair of specialized small language models (SSLMs) for structured OCR that jointly optimize transcription quality, generation stability, and inference cost. It also presents DharmaOCR-Benchmark, a benchmark that covers printed, handwritten, and legal/administrative documents, and proposes a unified evaluation protocol that measures fidelity and structure while explicitly tracking text degeneration as a first-class benchmark metric (alongside unit cost). Beyond reporting degeneration rates, the manuscript empirically shows degeneration is not merely a quality failure, since it materially worsens production performance by increasing response time, reducing throughput, and inflating computational cost due to abnormally long generations. To the best of the author's knowledge, as a methodological contribution, this is the first application of Direct Preference Optimization (DPO) for OCR, explicitly using degenerate generations as rejected examples to penalize looping behavior. Combined with Supervised Fine-Tuning (SFT) for enforcing a strict JSON schema (header, margin, footer, and text), DPO consistently reduces degeneration rate across model families (up to 87.6% relative) while preserving or improving extraction quality. The resulting models, namely, DharmaOCR Full (7B) and DharmaOCR Lite (3B), set a new state-of-the-art on DharmaOCR-Benchmark, outperforming each open-source and commercial baseline model evaluated regarding extraction quality, reaching 0.925 and 0.911 scores with 0.40% and 0.20% degeneration rates. AWQ quantization reduced up to 22% per-page cost with negligible quality loss, enabling a strong quality-cost trade-off in comparison to proprietary OCR APIs and open-source alternatives.

  • 4 authors
·
Apr 14

Point, Segment and Count: A Generalized Framework for Object Counting

Class-agnostic object counting aims to count all objects in an image with respect to example boxes or class names, a.k.a few-shot and zero-shot counting. In this paper, we propose a generalized framework for both few-shot and zero-shot object counting based on detection. Our framework combines the superior advantages of two foundation models without compromising their zero-shot capability: (i) SAM to segment all possible objects as mask proposals, and (ii) CLIP to classify proposals to obtain accurate object counts. However, this strategy meets the obstacles of efficiency overhead and the small crowded objects that cannot be localized and distinguished. To address these issues, our framework, termed PseCo, follows three steps: point, segment, and count. Specifically, we first propose a class-agnostic object localization to provide accurate but least point prompts for SAM, which consequently not only reduces computation costs but also avoids missing small objects. Furthermore, we propose a generalized object classification that leverages CLIP image/text embeddings as the classifier, following a hierarchical knowledge distillation to obtain discriminative classifications among hierarchical mask proposals. Extensive experimental results on FSC-147, COCO, and LVIS demonstrate that PseCo achieves state-of-the-art performance in both few-shot/zero-shot object counting/detection. Code: https://github.com/Hzzone/PseCo

  • 5 authors
·
Nov 21, 2023

Multivector Reranking in the Era of Strong First-Stage Retrievers

Learned multivector representations power modern search systems with strong retrieval effectiveness, but their real-world use is limited by the high cost of exhaustive token-level retrieval. Therefore, most systems adopt a gather-and-refine strategy, where a lightweight gather phase selects candidates for full scoring. However, this approach requires expensive searches over large token-level indexes and often misses the documents that would rank highest under full similarity. In this paper, we reproduce several state-of-the-art multivector retrieval methods on two publicly available datasets, providing a clear picture of the current multivector retrieval field and observing the inefficiency of token-level gathering. Building on top of that, we show that replacing the token-level gather phase with a single-vector document retriever -- specifically, a learned sparse retriever (LSR) -- produces a smaller and more semantically coherent candidate set. This recasts the gather-and-refine pipeline into the well-established two-stage retrieval architecture. As retrieval latency decreases, query encoding with two neural encoders becomes the dominant computational bottleneck. To mitigate this, we integrate recent inference-free LSR methods, demonstrating that they preserve the retrieval effectiveness of the dual-encoder pipeline while substantially reducing query encoding time. Finally, we investigate multiple reranking configurations that balance efficiency, memory, and effectiveness, and we introduce two optimization techniques that prune low-quality candidates early. Empirical results show that these techniques improve retrieval efficiency by up to 1.8times with no loss in quality. Overall, our two-stage approach achieves over 24times speedup over the state-of-the-art multivector retrieval systems, while maintaining comparable or superior retrieval quality.

  • 4 authors
·
Jan 8

Franca: Nested Matryoshka Clustering for Scalable Visual Representation Learning

We present Franca (pronounced Fran-ka): free one; the first fully open-source (data, code, weights) vision foundation model that matches and in many cases surpasses the performance of state-of-the-art proprietary models, e.g., DINOv2, CLIP, SigLIPv2, etc. Our approach is grounded in a transparent training pipeline inspired by Web-SSL and uses publicly available data: ImageNet-21K and a subset of ReLAION-2B. Beyond model release, we tackle critical limitations in SSL clustering methods. While modern models rely on assigning image features to large codebooks via clustering algorithms like Sinkhorn-Knopp, they fail to account for the inherent ambiguity in clustering semantics. To address this, we introduce a parameter-efficient, multi-head clustering projector based on nested Matryoshka representations. This design progressively refines features into increasingly fine-grained clusters without increasing the model size, enabling both performance and memory efficiency. Additionally, we propose a novel positional disentanglement strategy that explicitly removes positional biases from dense representations, thereby improving the encoding of semantic content. This leads to consistent gains on several downstream benchmarks, demonstrating the utility of cleaner feature spaces. Our contributions establish a new standard for transparent, high-performance vision models and open a path toward more reproducible and generalizable foundation models for the broader AI community. The code and model checkpoints are available at https://github.com/valeoai/Franca.

  • 8 authors
·
Jul 18, 2025 5

Cost-Effective Repository Exploration for Agentic Issue Localization

Repository exploration is a distinct and costly stage of coding-agent pipelines: before generating a patch, an agent must identify which repository files are likely to matter. We study whether this stage can be delegated to lower-cost models while retaining useful localization quality. Using our IssueLoc-Bench, we evaluate five explorer models under the same read-only interactive interface on 499 SWE-bench Verified-derived tasks and 500 tasks from 153 additional repositories. We measure early candidate discovery, top-three gold-file coverage, strict file-set recovery, agent time, and token usage, with paired instance-level uncertainty and repository-clustered sensitivity analysis. The highest-quality explorer leads across localization metrics, but substantially cheaper operating points emerge: depending on the model and evaluation arm, lower-cost explorers retain approximately 78-94% of the reference Hit@3 and 73-92% of its F1 while reducing mean agent time by 41-88% and token usage by 84-95%. The preferred operating point depends on how localization is consumed downstream: ranking and coverage metrics characterize recoverable candidate handoffs, whereas F1 and exact match characterize restrictive file gates. These results support treating repository exploration as an independently measurable and budgetable stage of modular coding agents, with explorer selection guided by the downstream handoff contract.

  • 2 authors
·
Aug 29

Noise-Aware Training of Layout-Aware Language Models

A visually rich document (VRD) utilizes visual features along with linguistic cues to disseminate information. Training a custom extractor that identifies named entities from a document requires a large number of instances of the target document type annotated at textual and visual modalities. This is an expensive bottleneck in enterprise scenarios, where we want to train custom extractors for thousands of different document types in a scalable way. Pre-training an extractor model on unlabeled instances of the target document type, followed by a fine-tuning step on human-labeled instances does not work in these scenarios, as it surpasses the maximum allowable training time allocated for the extractor. We address this scenario by proposing a Noise-Aware Training method or NAT in this paper. Instead of acquiring expensive human-labeled documents, NAT utilizes weakly labeled documents to train an extractor in a scalable way. To avoid degradation in the model's quality due to noisy, weakly labeled samples, NAT estimates the confidence of each training sample and incorporates it as uncertainty measure during training. We train multiple state-of-the-art extractor models using NAT. Experiments on a number of publicly available and in-house datasets show that NAT-trained models are not only robust in performance -- it outperforms a transfer-learning baseline by up to 6% in terms of macro-F1 score, but it is also more label-efficient -- it reduces the amount of human-effort required to obtain comparable performance by up to 73%.

  • 8 authors
·
Mar 30, 2024 1

FORGE: Forming Semantic Identifiers for Generative Retrieval in Industrial Datasets

Semantic identifiers (SIDs) have gained increasing attention in generative retrieval (GR) due to their meaningful semantic discriminability. However, current research on SIDs faces three main challenges: (1) the absence of large-scale public datasets with multimodal features, (2) limited investigation into optimization strategies for SID generation, which typically rely on costly GR training for evaluation, and (3) slow online convergence in industrial deployment. To address these challenges, we propose FORGE, a comprehensive benchmark for FOrming semantic identifieR in Generative rEtrieval with industrial datasets. Specifically, FORGE is equipped with a dataset comprising 14 billion user interactions and multimodal features of 250 million items sampled from Taobao, one of the biggest e-commerce platforms in China. Leveraging this dataset, FORGE explores several optimizations to enhance the SID construction and validates their effectiveness via offline experiments across different settings and tasks. Further online analysis conducted on our platform, which serves over 300 million users daily, reveals a 0.35% increase in transaction count, highlighting the practical impact of our method. Regarding the expensive SID validation accompanied by the full training of GRs, we propose two novel metrics of SID that correlate positively with recommendation performance, enabling convenient evaluations without any GR training. For real-world applications, FORGE introduces an offline pretraining schema that reduces online convergence by half. The code and data are available at https://github.com/selous123/al_sid.

  • 16 authors
·
Sep 25, 2025

WISER: Wider Search, Deeper Thinking, and Adaptive Fusion for Training-Free Zero-Shot Composed Image Retrieval

Zero-Shot Composed Image Retrieval (ZS-CIR) aims to retrieve target images given a multimodal query (comprising a reference image and a modification text), without training on annotated triplets. Existing methods typically convert the multimodal query into a single modality-either as an edited caption for Text-to-Image retrieval (T2I) or as an edited image for Image-to-Image retrieval (I2I). However, each paradigm has inherent limitations: T2I often loses fine-grained visual details, while I2I struggles with complex semantic modifications. To effectively leverage their complementary strengths under diverse query intents, we propose WISER, a training-free framework that unifies T2I and I2I via a "retrieve-verify-refine" pipeline, explicitly modeling intent awareness and uncertainty awareness. Specifically, WISER first performs Wider Search by generating both edited captions and images for parallel retrieval to broaden the candidate pool. Then, it conducts Adaptive Fusion with a verifier to assess retrieval confidence, triggering refinement for uncertain retrievals, and dynamically fusing the dual-path for reliable ones. For uncertain retrievals, WISER generates refinement suggestions through structured self-reflection to guide the next retrieval round toward Deeper Thinking. Extensive experiments demonstrate that WISER significantly outperforms previous methods across multiple benchmarks, achieving relative improvements of 45% on CIRCO (mAP@5) and 57% on CIRR (Recall@1) over existing training-free methods. Notably, it even surpasses many training-dependent methods, highlighting its superiority and generalization under diverse scenarios. Code will be released at https://github.com/Physicsmile/WISER.

  • 7 authors
·
Mar 23

An Index-based Approach for Efficient and Effective Web Content Extraction

As web agents (e.g., Deep Research) routinely consume massive volumes of web pages to gather and analyze information, LLM context management -- under large token budgets and low signal density -- emerges as a foundational, high-importance, and technically challenging problem for agentic and RAG pipelines. Existing solutions for extracting relevant content are inadequate: generative extraction models suffer from high latency, rule-based heuristics lack adaptability, and chunk-and-rerank methods are blind to webpage structure. To overcome these issues, we introduce Index-based Web Content Extraction to reframe the extraction process from slow, token-by-token generation into a highly efficient, discriminative task of index prediction, achieving both effectiveness and efficiency. We partition HTML into structure-aware, addressable segments, and extract only the positional indices of content relevant to a given query. This method decouples extraction latency from content length, enabling rapid, query-relevant extraction. We first evaluate our method as a post-retrieval processing component within an RAG QA system and find that it improves QA accuracy. Then we directly measure its match rate with the target content in two scenarios: main content extraction (ME) and query-relevant extraction (QE). Experimental results show that our method outperforms existing works in both accuracy and speed, effectively bridging the gap between LLMs and the vast webpages.

  • 4 authors
·
Dec 6, 2025

LLM-Driven Multi-step Translation from C to Rust using Static Analysis

Translating software written in legacy languages to modern languages, such as C to Rust, has significant benefits in improving memory safety while maintaining high performance. However, manual translation is cumbersome, error-prone, and produces unidiomatic code. Large language models (LLMs) have demonstrated promise in producing idiomatic translations, but offer no correctness guarantees as they lack the ability to capture all the semantics differences between the source and target languages. To resolve this issue, we propose SACTOR, an LLM-driven C-to-Rust zero-shot translation tool using a two-step translation methodology: an "unidiomatic" step to translate C into Rust while preserving semantics, and an "idiomatic" step to refine the code to follow Rust's semantic standards. SACTOR utilizes information provided by static analysis of the source C program to address challenges such as pointer semantics and dependency resolution. To validate the correctness of the translated result from each step, we use end-to-end testing via the foreign function interface to embed our translated code segment into the original code. We evaluate the translation of 200 programs from two datasets and two case studies, comparing the performance of GPT-4o, Claude 3.5 Sonnet, Gemini 2.0 Flash, Llama 3.3 70B and DeepSeek-R1 in SACTOR. Our results demonstrate that SACTOR achieves high correctness and improved idiomaticity, with the best-performing model (DeepSeek-R1) reaching 93% and (GPT-4o, Claude 3.5, DeepSeek-R1) reaching 84% correctness (on each dataset, respectively), while producing more natural and Rust-compliant translations compared to existing methods.

  • 6 authors
·
Mar 16, 2025

pico-type: A 1.5M-Parameter Byte-Level Multi-Head Content Classifier

We introduce pico-type, a byte-level multi-head content classifier with approximately 1.5 million parameters that simultaneously predicts seven content properties from raw UTF-8 bytes in a single forward pass. Operating directly at the byte level -- no tokenizer, no subword vocabulary, no pretrained embeddings -- pico-type classifies coarse type (12 classes), modality (8), subtype (24), code language (62), text language (30), file MIME type (90), and risk flags (6-label multi-label: API keys, JWTs, passwords, emails, phone numbers, SSH keys). The architecture combines a learned byte embedding, three convolutional blocks with growing receptive fields, two bidirectional attention layers with rotary position encodings, and a statistical pooling layer feeding seven Matryoshka-style classification heads. Four tiered variants (tiny/small/base/pro) share the same trunk with sliced representations from 16 to 576 dimensions, yielding ONNX exports under 210 KB and CPU inference under 10 ms. Trained on a mixture of synthetic templates and real-world data (8709 GitHub code samples, 5000 Wikipedia articles), pico-type achieves 60.3 percent code language accuracy on The Heap benchmark (24 languages) and 98.2 percent text language accuracy on Wikipedia (30 languages) -- improvements of +57 and +79 percentage points respectively over the synthetic-only baseline. Format-based heads (coarse, modality, subtype, file_mime, risk) maintain 100 percent accuracy on synthetic benchmarks. The model, code, and pretrained weights are released under Apache 2.0.

eulogik Eulogik
·
Jul 30

Dripper: Token-Efficient Main HTML Extraction with a Lightweight LM

High-quality main content extraction from web pages is a critical prerequisite for constructing large-scale training corpora. While traditional heuristic extractors are efficient, they lack the semantic reasoning required to handle the structural heterogeneity of the modern web. Conversely, well-pretrained generative Large Language Models (LLMs) offer superior document comprehension but are prohibited by excessive computational costs, limited context windows, and hallucination risks when applied at web scale. We present Dripper, a lightweight framework that resolves these bottlenecks through four contributions: (1) We reformulate extraction as a constrained sequence labeling task using SLMs (Small Language Models). This paradigm eliminates generative hallucinations and achieves exceptional efficiency, reaching a throughput of 3.08 pages per second on a single A100 GPU. (2) We construct WebMainBench, a rigorous benchmark of 7,809 human-annotated pages covering 5,434 unique domains and multiple languages. Evaluations show our Dripper-0.6B model outperforms heuristics like Trafilatura and rivals massive models like DeepSeek-V3.2(685B), GPT-5 and Gemini-2.5-Pro, offering an optimal efficiency-accuracy trade-off. (3) We demonstrate infrastructural value by pre-training a 1B model on a Dripper-curated corpus (63B tokens). This model significantly outperforms baselines in downstream tasks, proving the critical role of extraction quality and the effectiveness of our framework. (4) We open-source the Dripper-0.6B weights and codebase to facilitate the construction of high-quality datasets.

  • 17 authors
·
Nov 28, 2025 1

FASER: Fine-Grained Phase Management for Speculative Decoding in Dynamic LLM Serving

Speculative decoding (SD) is a widely used approach for accelerating decode-heavy LLM inference workloads. While online inference workloads are highly dynamic, existing SD systems are rigid and take a coarse-grained approach to SD management. They typically set the speculative token length for an entire batch and serialize the execution of the draft and verification phases. Consequently, these systems fall short at adapting to volatile online inference traffic. Under low load, they exhibit prolonged latency because the draft phase blocks the verification phase for the entire batch, leaving GPU computing resources underutilized. Conversely, under high load, they waste computation on rejected tokens during the verification phase, overloading GPU resources. We introduce FASER, a novel system that features fine-grained SD phase management. First, FASER minimizes computational waste by dynamically adjusting the speculative length for each request within a continuous batch and by performing early pruning of rejected tokens inside the verification phase. Second, FASER breaks the verification phase into frontiers, or chunks, to overlap them with the draft phase. This overlap is achieved via fine-grained spatial multiplexing with minimal resource interference. Our FASER prototype in vLLM improves throughput by up to 53% and reduces latency by up to 1.92times compared to state-of-the-art systems.

  • 4 authors
·
Apr 21

Label-independent hyperparameter-free self-supervised single-view deep subspace clustering

Deep subspace clustering (DSC) algorithms face several challenges that hinder their widespread adoption across variois application domains. First, clustering quality is typically assessed using only the encoder's output layer, disregarding valuable information present in the intermediate layers. Second, most DSC approaches treat representation learning and subspace clustering as independent tasks, limiting their effectiveness. Third, they assume the availability of a held-out dataset for hyperparameter tuning, which is often impractical in real-world scenarios. Fourth, learning termination is commonly based on clustering error monitoring, requiring external labels. Finally, their performance often depends on post-processing techniques that rely on labeled data. To address this limitations, we introduce a novel single-view DSC approach that: (i) minimizes a layer-wise self expression loss using a joint representation matrix; (ii) optimizes a subspace-structured norm to enhance clustering quality; (iii) employs a multi-stage sequential learning framework, consisting of pre-training and fine-tuning, enabling the use of multiple regularization terms without hyperparameter tuning; (iv) incorporates a relative error-based self-stopping mechanism to terminate training without labels; and (v) retains a fixed number of leading coefficients in the learned representation matrix based on prior knowledge. We evaluate the proposed method on six datasets representing faces, digits, and objects. The results show that our method outperforms most linear SC algorithms with careffulyl tuned hyperparameters while maintaining competitive performance with the best performing linear appoaches.

  • 2 authors
·
Apr 25, 2025

Relax Image-Specific Prompt Requirement in SAM: A Single Generic Prompt for Segmenting Camouflaged Objects

Camouflaged object detection (COD) approaches heavily rely on pixel-level annotated datasets. Weakly-supervised COD (WSCOD) approaches use sparse annotations like scribbles or points to reduce annotation effort, but this can lead to decreased accuracy. The Segment Anything Model (SAM) shows remarkable segmentation ability with sparse prompts like points. However, manual prompt is not always feasible, as it may not be accessible in real-world application. Additionally, it only provides localization information instead of semantic one, which can intrinsically cause ambiguity in interpreting the targets. In this work, we aim to eliminate the need for manual prompt. The key idea is to employ Cross-modal Chains of Thought Prompting (CCTP) to reason visual prompts using the semantic information given by a generic text prompt. To that end, we introduce a test-time adaptation per-instance mechanism called Generalizable SAM (GenSAM) to automatically enerate and optimize visual prompts the generic task prompt for WSCOD. In particular, CCTP maps a single generic text prompt onto image-specific consensus foreground and background heatmaps using vision-language models, acquiring reliable visual prompts. Moreover, to test-time adapt the visual prompts, we further propose Progressive Mask Generation (PMG) to iteratively reweight the input image, guiding the model to focus on the targets in a coarse-to-fine manner. Crucially, all network parameters are fixed, avoiding the need for additional training. Experiments demonstrate the superiority of GenSAM. Experiments on three benchmarks demonstrate that GenSAM outperforms point supervision approaches and achieves comparable results to scribble supervision ones, solely relying on general task descriptions as prompts. our codes is in: https://lwpyh.github.io/GenSAM/.

  • 4 authors
·
Dec 12, 2023

Less is More: Compact Clue Selection for Efficient Retrieval-Augmented Generation Reasoning

Current RAG retrievers are designed primarily for human readers, emphasizing complete, readable, and coherent paragraphs. However, Large Language Models (LLMs) benefit more from precise, compact, and well-structured input, which enhances reasoning quality and efficiency. Existing methods rely on reranking or summarization to identify key sentences, but may introduce semantic breaks and unfaithfulness. Thus, efficiently extracting and organizing answer-relevant clues from large-scale documents while reducing LLM reasoning costs remains challenging in RAG systems. Inspired by Occam's razor, we frame LLM-centric retrieval as MinMax optimization: maximizing the extraction of potential clues and reranking them for well-organization, while minimizing reasoning costs by truncating to the smallest sufficient set of clues. In this paper, we propose CompSelect, a compact clue selection mechanism for LLM-centric RAG, consisting of a clue extractor, a reranker, and a truncator. (1) The clue extractor first uses answer-containing sentences as fine-tuning targets, aiming to extract sufficient potential clues; (2) The reranker is trained to prioritize effective clues based on real LLM feedback; (3) The truncator uses the truncated text containing the minimum sufficient clues for answering the question as fine-tuning targets, thereby enabling efficient RAG reasoning. Experiments on three QA datasets demonstrate that CompSelect improves performance while reducing both total and online latency compared to a range of baseline methods. Further analysis also confirms its robustness to unreliable retrieval and generalization across different scenarios.

  • 6 authors
·
Jan 26

SpecCLIP: Aligning and Translating Spectroscopic Measurements for Stars

In recent years, large language models (LLMs) have transformed natural language understanding through vast datasets and large-scale parameterization. Inspired by this success, we present SpecCLIP, a foundation model framework that extends LLM-inspired methodologies to stellar spectral analysis. Stellar spectra, akin to structured language, encode rich physical and chemical information about stars. By training foundation models on large-scale spectral datasets, our goal is to learn robust and informative embeddings that support diverse downstream applications. As a proof of concept, SpecCLIP involves pre-training on two spectral types--LAMOST low-resolution and Gaia XP--followed by contrastive alignment using the CLIP (Contrastive Language-Image Pre-training) framework, adapted to associate spectra from different instruments. This alignment is complemented by auxiliary decoders that preserve spectrum-specific information and enable translation (prediction) between spectral types, with the former achieved by maximizing mutual information between embeddings and input spectra. The result is a cross-spectrum framework enabling intrinsic calibration and flexible applications across instruments. We demonstrate that fine-tuning these models on moderate-sized labeled datasets improves adaptability to tasks such as stellar-parameter estimation and chemical-abundance determination. SpecCLIP also enhances the accuracy and precision of parameter estimates benchmarked against external survey data. Additionally, its similarity search and cross-spectrum prediction capabilities offer potential for anomaly detection. Our results suggest that contrastively trained foundation models enriched with spectrum-aware decoders can advance precision stellar spectroscopy.

  • 9 authors
·
Jul 2, 2025

ESSAformer: Efficient Transformer for Hyperspectral Image Super-resolution

Single hyperspectral image super-resolution (single-HSI-SR) aims to restore a high-resolution hyperspectral image from a low-resolution observation. However, the prevailing CNN-based approaches have shown limitations in building long-range dependencies and capturing interaction information between spectral features. This results in inadequate utilization of spectral information and artifacts after upsampling. To address this issue, we propose ESSAformer, an ESSA attention-embedded Transformer network for single-HSI-SR with an iterative refining structure. Specifically, we first introduce a robust and spectral-friendly similarity metric, \ie, the spectral correlation coefficient of the spectrum (SCC), to replace the original attention matrix and incorporates inductive biases into the model to facilitate training. Built upon it, we further utilize the kernelizable attention technique with theoretical support to form a novel efficient SCC-kernel-based self-attention (ESSA) and reduce attention computation to linear complexity. ESSA enlarges the receptive field for features after upsampling without bringing much computation and allows the model to effectively utilize spatial-spectral information from different scales, resulting in the generation of more natural high-resolution images. Without the need for pretraining on large-scale datasets, our experiments demonstrate ESSA's effectiveness in both visual quality and quantitative results.

  • 6 authors
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Jul 26, 2023

TALON: Test-time Adaptive Learning for On-the-Fly Category Discovery

On-the-fly category discovery (OCD) aims to recognize known categories while simultaneously discovering novel ones from an unlabeled online stream, using a model trained only on labeled data. Existing approaches freeze the feature extractor trained offline and employ a hash-based framework that quantizes features into binary codes as class prototypes. However, discovering novel categories with a fixed knowledge base is counterintuitive, as the learning potential of incoming data is entirely neglected. In addition, feature quantization introduces information loss, diminishes representational expressiveness, and amplifies intra-class variance. It often results in category explosion, where a single class is fragmented into multiple pseudo-classes. To overcome these limitations, we propose a test-time adaptation framework that enables learning through discovery. It incorporates two complementary strategies: a semantic-aware prototype update and a stable test-time encoder update. The former dynamically refines class prototypes to enhance classification, whereas the latter integrates new information directly into the parameter space. Together, these components allow the model to continuously expand its knowledge base with newly encountered samples. Furthermore, we introduce a margin-aware logit calibration in the offline stage to enlarge inter-class margins and improve intra-class compactness, thereby reserving embedding space for future class discovery. Experiments on standard OCD benchmarks demonstrate that our method substantially outperforms existing hash-based state-of-the-art approaches, yielding notable improvements in novel-class accuracy and effectively mitigating category explosion. The code is publicly available at blue{https://github.com/ynanwu/TALON}.

  • 8 authors
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Mar 9 2

Mining Subscenario Refactoring Opportunities in Behaviour-Driven Software Test Suites: ML Classifiers and LLM-Judge Baselines

Context. Behaviour-Driven Development (BDD) software test suites accumulate duplicated step subsequences. Three published refactoring patterns are available (within-file Background, within-repo reusable-scenario invocation, cross-organisational shared higher-level step), but no prior work automates which recurring subsequences are worth extracting or which mechanism applies. Objective. Rank recurring step subsequences ("slices") by refactoring suitability (extraction-worthy), pre-map each to one of the three patterns, and quantify prevalence across the public BDD ecosystem. Method. Every contiguous L-step window (L in [2, 18]) in a 339-repository / 276-upstream-owner Gherkin corpus is keyed by paraphrase-robust cluster identifiers and counted under three scopes. Sentence-BERT (SBERT) / Uniform Manifold Approximation and Projection (UMAP) / Hierarchical Density-Based Clustering (HDBSCAN) recovers paraphrase-equivalent slices. Three authors label a stratified 200-slice pool against a written rubric. An eXtreme Gradient Boosting (XGBoost) extraction-worthy classifier trained under 5-fold cross-validation is compared with a tuned rule baseline and two open-weight Large Language Model (LLM) judges. Results. The miner produces 5,382,249 slices collapsing to 692,020 recurring patterns. Three-author Fleiss' kappa = 0.56 (extraction-worthy) and 0.79 (mechanism). The classifier reaches out-of-fold F1 = 0.891 (95% CI [0.852, 0.927]), outperforming both the rule baseline (F1 = 0.836, p = 0.017) and the better LLM judge (F1 = 0.728, p < 1e-4). 75.0%, 59.5%, and 11.7% of scenarios carry a within-file Background, within-repo reusable-scenario, or cross-organisational shared-step candidate. Conclusion. Paraphrase-robust subscenario discovery yields a corpus-wide census of BDD refactoring opportunities; pipeline, classifier predictions, labelled pool, and rubric are released under Apache-2.0.

  • 3 authors
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May 13 1

SAFREE: Training-Free and Adaptive Guard for Safe Text-to-Image And Video Generation

Recent advances in diffusion models have significantly enhanced their ability to generate high-quality images and videos, but they have also increased the risk of producing unsafe content. Existing unlearning/editing-based methods for safe generation remove harmful concepts from models but face several challenges: (1) They cannot instantly remove harmful concepts without training. (2) Their safe generation capabilities depend on collected training data. (3) They alter model weights, risking degradation in quality for content unrelated to toxic concepts. To address these, we propose SAFREE, a novel, training-free approach for safe T2I and T2V, that does not alter the model's weights. Specifically, we detect a subspace corresponding to a set of toxic concepts in the text embedding space and steer prompt embeddings away from this subspace, thereby filtering out harmful content while preserving intended semantics. To balance the trade-off between filtering toxicity and preserving safe concepts, SAFREE incorporates a novel self-validating filtering mechanism that dynamically adjusts the denoising steps when applying the filtered embeddings. Additionally, we incorporate adaptive re-attention mechanisms within the diffusion latent space to selectively diminish the influence of features related to toxic concepts at the pixel level. In the end, SAFREE ensures coherent safety checking, preserving the fidelity, quality, and safety of the output. SAFREE achieves SOTA performance in suppressing unsafe content in T2I generation compared to training-free baselines and effectively filters targeted concepts while maintaining high-quality images. It also shows competitive results against training-based methods. We extend SAFREE to various T2I backbones and T2V tasks, showcasing its flexibility and generalization. SAFREE provides a robust and adaptable safeguard for ensuring safe visual generation.

  • 5 authors
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Oct 16, 2024

scShapeBench: Discovering geometry from high dimensional scRNAseq data

High-dimensional point cloud data arise across many scientific domains, especially single-cell biology. The shapes or topologies of these datasets determine the types of information that can be extracted. For example, clustered data supports cell-type identification, trajectory structures support transition analysis, and archetypal structures capture continua of cellular behaviors. Existing analysis pipelines often assume a specific shape. The standard Seurat pipeline combines UMAP visualization with Louvain clustering and therefore assumes clustered data, while tools such as Monocle and SPADE assume tree-like structures, and flow-based models such as MIOFlow and Conditional Flow Matching target trajectories. Choosing which pipeline to apply is therefore often left to bioinformaticians who visually inspect datasets before selecting an analysis strategy. With the rise of agentic AI scientists, automating shape detection is increasingly important for selecting downstream analysis pipelines. To address this problem, we introduce scShapeBench, a benchmark dataset for shape detection containing both synthetic and expert-annotated single-cell datasets. Synthetic datasets are sampled from ground-truth skeleton graphs with controlled variance. Real single-cell datasets are curated from diverse sources and annotated by experts into four categories: clusters, single trajectory, multi-branching, and archetypal. We additionally introduce scReebTower, a baseline method that uses diffusion geometry to extract Reeb graphs and connect visualization with pipeline selection. We provide topology-aware evaluation metrics and compare scReebTower against PAGA and Mapper on synthetic and real data. Our results indicate that scReebTower outperforms existing baselines. Overall, our contributions span benchmarks, evaluation metrics, and a baseline for automated shape detection in single-cell data.

YaleUniversity Yale University
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May 11

MinerU2.5-Pro: Pushing the Limits of Data-Centric Document Parsing at Scale

Current document parsing methods compete primarily on model architecture innovation, while systematic engineering of training data remains underexplored. Yet SOTA models of different architectures and parameter scales exhibit highly consistent failure patterns on the same set of hard samples, suggesting that the performance bottleneck stems from shared deficiencies in training data rather than architecture itself. Building on this finding, we present \minerupro, which advances the state of the art solely through data engineering and training strategy optimization while keeping the 1.2B-parameter architecture of \mineru completely fixed. At its core is a Data Engine co-designed around coverage, informativeness, and annotation accuracy: Diversity-and-Difficulty-Aware Sampling expands training data from under 10M to 65.5M samples while correcting distribution shift; Cross-Model Consistency Verification leverages output agreement among heterogeneous models to assess sample difficulty and generate reliable annotations; the Judge-and-Refine pipeline improves annotation quality for hard samples through render-then-verify iterative correction. A three-stage progressive training strategy -- large-scale pre-training, hard sample fine-tuning, and GRPO alignment -- sequentially exploits these data at different quality tiers. On the evaluation front, we fix element-matching biases in OmniDocBench~v1.5 and introduce a Hard subset, establishing the more discriminative OmniDocBench~v1.6 protocol. Without any architectural modification, \minerupro achieves 95.69 on OmniDocBench~v1.6, improving over the same-architecture baseline by 2.71 points and surpassing all existing methods including models with over 200times more parameters.

opendatalab OpenDataLab
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Apr 5 4

Bullion: A Column Store for Machine Learning

The past two decades have witnessed significant success in applying columnar storage to data warehousing and analytics. However, the rapid growth of machine learning poses new challenges. This paper presents Bullion, a columnar storage system tailored for machine learning workloads. Bullion addresses the complexities of data compliance, optimizes the encoding of long sequence sparse features, efficiently manages wide-table projections, introduces feature quantization in storage, enables quality-aware sequential reads for multimodal training data, and provides a comprehensive cascading encoding framework that unifies diverse encoding schemes through modular, composable interfaces. By aligning with the evolving requirements of ML applications, Bullion facilitates the application of columnar storage and processing to modern application scenarios such as those within advertising, recommendation systems, and Generative AI. Preliminary experimental results and theoretical analysis demonstrate Bullion's improved ability to deliver strong performance in the face of the unique demands of machine learning workloads compared to existing columnar storage solutions. Bullion significantly reduces I/O costs for deletion compliance, achieves substantial storage savings with its optimized encoding scheme for sparse features, and improves metadata parsing speed for wide-table projections. These advancements enable Bullion to become an important component in the future of machine learning infrastructure, enabling organizations to efficiently manage and process the massive volumes of data required for training and inference in modern AI applications.

  • 4 authors
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Apr 13, 2024

Beyond Text and Tables: Vision-Language Model Integration in ComProScanner for Extracting Materials Data from Scientific Figures with High Accuracy

Automated extraction of materials composition-property data from scientific literature has advanced considerably with the development of large language model-based pipelines; however, existing frameworks remain limited to textual and tabular content, overlooking the substantial proportion of quantitative property data reported exclusively in scientific figures. Here, we extend ComProScanner, a fully end-to-end multi-agent framework for automated composition-property database construction, with a native vision-language model (VLM) based figure extraction capability. The extension introduces a FigureExtractor utility for caption-keyword-based figure filtering across all supported publishers, and a GraphExtractorTool agent that passes extracted figures to a configurable VLM to recover composition-property pairs from scientific charts and plots. Four VLMs are selected for evaluation on the basis of the LMArena Diagram leaderboard with an input cost criterion of less than \1.50 per million tokens. Benchmarking on 50 piezoelectric ceramic articles from the established d_{33}$ test corpus demonstrates that Gemini-3-Flash-Preview achieves the highest performance with a composition accuracy of 0.97 and a normalised F1 score of 0.97, whilst remaining the most cost-effective model among the four evaluated. We additionally introduce a range-based value error threshold parameter into the evaluation framework, providing a more physically meaningful assessment of numeric property values extracted from figures than exact value matching. These contributions establish VLM-integrated ComProScanner as the first materials-specific, fully automated, multimodal literature mining platform capable of extracting structured composition-property data from text, tables, and figures within a single unified pipeline.

  • 4 authors
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May 18

SC-Arena: A Natural Language Benchmark for Single-Cell Reasoning with Knowledge-Augmented Evaluation

Large language models (LLMs) are increasingly applied in scientific research, offering new capabilities for knowledge discovery and reasoning. In single-cell biology, however, evaluation practices for both general and specialized LLMs remain inadequate: existing benchmarks are fragmented across tasks, adopt formats such as multiple-choice classification that diverge from real-world usage, and rely on metrics lacking interpretability and biological grounding. We present SC-ARENA, a natural language evaluation framework tailored to single-cell foundation models. SC-ARENA formalizes a virtual cell abstraction that unifies evaluation targets by representing both intrinsic attributes and gene-level interactions. Within this paradigm, we define five natural language tasks (cell type annotation, captioning, generation, perturbation prediction, and scientific QA) that probe core reasoning capabilities in cellular biology. To overcome the limitations of brittle string-matching metrics, we introduce knowledge-augmented evaluation, which incorporates external ontologies, marker databases, and scientific literature to support biologically faithful and interpretable judgments. Experiments and analysis across both general-purpose and domain-specialized LLMs demonstrate that (i) under the Virtual Cell unified evaluation paradigm, current models achieve uneven performance on biologically complex tasks, particularly those demanding mechanistic or causal understanding; and (ii) our knowledge-augmented evaluation framework ensures biological correctness, provides interpretable, evidence-grounded rationales, and achieves high discriminative capacity, overcoming the brittleness and opacity of conventional metrics. SC-Arena thus provides a unified and interpretable framework for assessing LLMs in single-cell biology, pointing toward the development of biology-aligned, generalizable foundation models.

  • 8 authors
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Feb 25

Octopus: A Lightweight Entity-Aware System for Multi-Table Data Discovery and Cell-Level Retrieval

Tabular data constitute a dominant form of information in modern data lakes and repositories, yet discovering the relevant tables to answer user questions remains challenging. Existing data discovery systems assume that each question can be answered by a single table and often rely on resource-intensive offline preprocessing, such as model training or large-scale content indexing. In practice, however, many questions require information spread across multiple tables -- either independently or through joins -- and users often seek specific cell values rather than entire tables. In this paper, we present Octopus, a lightweight, entity-aware, and training-free system for multi-table data discovery and cell-level value retrieval. Instead of embedding entire questions, Octopus identifies fine-grained entities (column mentions and value mentions) from natural-language queries using an LLM parser. It then matches these entities to table headers through a compact embedding index and scans table contents directly for value occurrences, eliminating the need for heavy content indexing or costly offline stages. The resulting fine-grained alignment not only improves table retrieval accuracy but also facilitates efficient downstream NL2SQL execution by reducing token usage and redundant LLM calls. To evaluate Octopus, we introduce a new benchmark covering both table- and cell-level discovery under multi-table settings, including five datasets for independent discovery and two for join-based discovery. Experimental results show that Octopus consistently outperforms existing systems while achieving substantially lower computational and token costs. Code is available at https://github.com/wenzhilics/octopus.

  • 2 authors
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Jan 5

GeoFormer: Geometry-Aware Transformer and its application to 5D First-Arrival Picking

We propose GeoFormer, a Geometry-Aware Transformer architecture specifically designed for prestack seismic data. Unlike Vision Transformer, whose tokens are extracted from 2D patches and primarily encode visual patterns, GeoFormer is designed for prestack seismic data by explicitly incorporating acquisition geometry. Each seismic trace is represented by a 5D unit consisting of the waveform and four source-receiver coordinates, from which two geometric attributes are derived: offset and relative elevation, where relative elevation is the receiver elevation minus the source elevation. GeoFormer therefore performs trace-level tokenization, where each token combines the waveform with these geometric attributes. To exploit these geometric attributes, GeoFormer introduces three geometry injection mechanisms operating at different levels of the Transformer pipeline. At the token level, GeomMLP replaces the classification token with a per-trace geometric representation derived from offset and elevation. At the normalization level, GeomAdaLN replaces uniform layer normalization with geometry-conditioned feature modulation. At the attention level, GeomAttnBias injects a parameter-free physical prior that geometrically proximate traces should attend more to each other. We validate GeoFormer on first-arrival picking, a representative seismic processing task that relies heavily on acquisition geometry. Experiments on four field datasets demonstrate that GeoFormer outperforms Vision Transformer and two task-specific baselines. Crucially, GeoFormer maintains robust picking accuracy under strong noise because its trace-level tokens encode geometric attributes that provide a physical prior independent of waveform quality. Ablation studies confirm that GeomMLP, GeomAdaLN, and GeomAttnBias each contribute to GeoFormer's picking accuracy.

  • 2 authors
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Aug 25

Mamba-FSCIL: Dynamic Adaptation with Selective State Space Model for Few-Shot Class-Incremental Learning

Few-shot class-incremental learning (FSCIL) confronts the challenge of integrating new classes into a model with minimal training samples while preserving the knowledge of previously learned classes. Traditional methods widely adopt static adaptation relying on a fixed parameter space to learn from data that arrive sequentially, prone to overfitting to the current session. Existing dynamic strategies require the expansion of the parameter space continually, leading to increased complexity. To address these challenges, we integrate the recently proposed selective state space model (SSM) into FSCIL. Concretely, we propose a dual selective SSM projector that dynamically adjusts the projection parameters based on the intermediate features for dynamic adaptation. The dual design enables the model to maintain the robust features of base classes, while adaptively learning distinctive feature shifts for novel classes. Additionally, we develop a class-sensitive selective scan mechanism to guide dynamic adaptation. It minimizes the disruption to base-class representations caused by training on novel data, and meanwhile, forces the selective scan to perform in distinct patterns between base and novel classes. Experiments on miniImageNet, CUB-200, and CIFAR-100 demonstrate that our framework outperforms the existing state-of-the-art methods. The code is available at https://github.com/xiaojieli0903/Mamba-FSCIL.

  • 6 authors
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Jul 8, 2024

Few-Shot Class-Incremental Learning via Training-Free Prototype Calibration

Real-world scenarios are usually accompanied by continuously appearing classes with scare labeled samples, which require the machine learning model to incrementally learn new classes and maintain the knowledge of base classes. In this Few-Shot Class-Incremental Learning (FSCIL) scenario, existing methods either introduce extra learnable components or rely on a frozen feature extractor to mitigate catastrophic forgetting and overfitting problems. However, we find a tendency for existing methods to misclassify the samples of new classes into base classes, which leads to the poor performance of new classes. In other words, the strong discriminability of base classes distracts the classification of new classes. To figure out this intriguing phenomenon, we observe that although the feature extractor is only trained on base classes, it can surprisingly represent the semantic similarity between the base and unseen new classes. Building upon these analyses, we propose a simple yet effective Training-frEE calibratioN (TEEN) strategy to enhance the discriminability of new classes by fusing the new prototypes (i.e., mean features of a class) with weighted base prototypes. In addition to standard benchmarks in FSCIL, TEEN demonstrates remarkable performance and consistent improvements over baseline methods in the few-shot learning scenario. Code is available at: https://github.com/wangkiw/TEEN

  • 5 authors
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Dec 8, 2023

A Unified Framework for Learned Sparse Retrieval

Learned sparse retrieval (LSR) is a family of first-stage retrieval methods that are trained to generate sparse lexical representations of queries and documents for use with an inverted index. Many LSR methods have been recently introduced, with Splade models achieving state-of-the-art performance on MSMarco. Despite similarities in their model architectures, many LSR methods show substantial differences in effectiveness and efficiency. Differences in the experimental setups and configurations used make it difficult to compare the methods and derive insights. In this work, we analyze existing LSR methods and identify key components to establish an LSR framework that unifies all LSR methods under the same perspective. We then reproduce all prominent methods using a common codebase and re-train them in the same environment, which allows us to quantify how components of the framework affect effectiveness and efficiency. We find that (1) including document term weighting is most important for a method's effectiveness, (2) including query weighting has a small positive impact, and (3) document expansion and query expansion have a cancellation effect. As a result, we show how removing query expansion from a state-of-the-art model can reduce latency significantly while maintaining effectiveness on MSMarco and TripClick benchmarks. Our code is publicly available at https://github.com/thongnt99/learned-sparse-retrieval

  • 3 authors
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Mar 23, 2023

Training-free CryoET Tomogram Segmentation

Cryogenic Electron Tomography (CryoET) is a useful imaging technology in structural biology that is hindered by its need for manual annotations, especially in particle picking. Recent works have endeavored to remedy this issue with few-shot learning or contrastive learning techniques. However, supervised training is still inevitable for them. We instead choose to leverage the power of existing 2D foundation models and present a novel, training-free framework, CryoSAM. In addition to prompt-based single-particle instance segmentation, our approach can automatically search for similar features, facilitating full tomogram semantic segmentation with only one prompt. CryoSAM is composed of two major parts: 1) a prompt-based 3D segmentation system that uses prompts to complete single-particle instance segmentation recursively with Cross-Plane Self-Prompting, and 2) a Hierarchical Feature Matching mechanism that efficiently matches relevant features with extracted tomogram features. They collaborate to enable the segmentation of all particles of one category with just one particle-specific prompt. Our experiments show that CryoSAM outperforms existing works by a significant margin and requires even fewer annotations in particle picking. Further visualizations demonstrate its ability when dealing with full tomogram segmentation for various subcellular structures. Our code is available at: https://github.com/xulabs/aitom

  • 8 authors
·
Jul 7, 2024

SemParser: A Semantic Parser for Log Analysis

Logs, being run-time information automatically generated by software, record system events and activities with their timestamps. Before obtaining more insights into the run-time status of the software, a fundamental step of log analysis, called log parsing, is employed to extract structured templates and parameters from the semi-structured raw log messages. However, current log parsers are all syntax-based and regard each message as a character string, ignoring the semantic information included in parameters and templates. Thus, we propose the semantic-based parser SemParser to unlock the critical bottleneck of mining semantics from log messages. It contains two steps, an end-to-end semantic miner and a joint parser. Specifically, the first step aims to identify explicit semantics inside a single log, and the second step is responsible for jointly inferring implicit semantics and computing structural outputs based on the contextual knowledge base. To analyze the effectiveness of our semantic parser, we first demonstrate that it can derive rich semantics from log messages collected from six widely-applied systems with an average F1 score of 0.985. Then, we conduct two representative downstream tasks, showing that current downstream models improve their performance with appropriately extracted semantics by 1.2%-11.7% and 8.65% on two anomaly detection datasets and a failure identification dataset, respectively. We believe these findings provide insights into semantically understanding log messages for the log analysis community.

  • 4 authors
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Dec 23, 2021

SPAR: Session-based Pipeline for Adaptive Retrieval on Legacy File Systems

The ability to extract value from historical data is essential for enterprise decision-making. However, much of this information remains inaccessible within large legacy file systems that lack structured organization and semantic indexing, making retrieval and analysis inefficient and error-prone. We introduce SPAR (Session-based Pipeline for Adaptive Retrieval), a conceptual framework that integrates Large Language Models (LLMs) into a Retrieval-Augmented Generation (RAG) architecture specifically designed for legacy enterprise environments. Unlike conventional RAG pipelines, which require costly construction and maintenance of full-scale vector databases that mirror the entire file system, SPAR employs a lightweight two-stage process: a semantic Metadata Index is first created, after which session-specific vector databases are dynamically generated on demand. This design reduces computational overhead while improving transparency, controllability, and relevance in retrieval. We provide a theoretical complexity analysis comparing SPAR with standard LLM-based RAG pipelines, demonstrating its computational advantages. To validate the framework, we apply SPAR to a synthesized enterprise-scale file system containing a large corpus of biomedical literature, showing improvements in both retrieval effectiveness and downstream model accuracy. Finally, we discuss design trade-offs and outline open challenges for deploying SPAR across diverse enterprise settings.

  • 4 authors
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Dec 14, 2025