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Jul 31

Cleaning up the Mess

A MICRO 2024 best paper runner-up publication (the Mess paper) with all three artifact badges awarded (including "Reproducible") proposes a new benchmark to evaluate real and simulated memory system performance. In this paper, we demonstrate that the Ramulator 2.0 simulation results reported in the Mess paper are incorrect and, at the time of the publication of the Mess paper, irreproducible. We find that the authors of Mess paper made multiple trivial human errors in both the configuration and usage of the simulators. We show that by correctly configuring Ramulator 2.0, Ramulator 2.0's simulated memory system performance actually resembles real system characteristics well, and thus a key claimed contribution of the Mess paper is factually incorrect. We also identify that the DAMOV simulation results in the Mess paper use wrong simulation statistics that are unrelated to the simulated DRAM performance. Moreover, the Mess paper's artifact repository lacks the necessary sources to fully reproduce all the Mess paper's results. Our work corrects the Mess paper's errors regarding Ramulator 2.0 and identifies important issues in the Mess paper's memory simulator evaluation methodology. We emphasize the importance of both carefully and rigorously validating simulation results and contacting simulator authors and developers, in true open source spirit, to ensure these simulators are used with correct configurations and as intended. We encourage the computer architecture community to correct the Mess paper's errors. This is necessary to prevent the propagation of inaccurate and misleading results, and to maintain the reliability of the scientific record. Our investigation also opens up questions about the integrity of the review and artifact evaluation processes. To aid future work, our source code and scripts are openly available at https://github.com/CMU-SAFARI/ramulator2/tree/mess.

  • 7 authors
·
Oct 17, 2025

LLM-Assisted Code Cleaning For Training Accurate Code Generators

Natural language to code generation is an important application area of LLMs and has received wide attention from the community. The majority of relevant studies have exclusively concentrated on increasing the quantity and functional correctness of training sets while disregarding other stylistic elements of programs. More recently, data quality has garnered a lot of interest and multiple works have showcased its importance for improving performance. In this work, we investigate data quality for code and find that making the code more structured and readable leads to improved code generation performance of the system. We build a novel data-cleaning pipeline that uses these principles to transform existing programs by 1.) renaming variables, 2.) modularizing and decomposing complex code into smaller helper sub-functions, and 3.) inserting natural-language based plans via LLM based transformations. We evaluate our approach on two challenging algorithmic code generation benchmarks and find that fine-tuning CodeLLaMa-7B on our transformed modularized programs improves the performance by up to 30% compared to fine-tuning on the original dataset. Additionally, we demonstrate improved performance from using a smaller amount of higher-quality data, finding that a model fine-tuned on the entire original dataset is outperformed by a model trained on 15% of our cleaned dataset. Even in comparison to closed-source models, our models outperform the much larger AlphaCoder models.

  • 6 authors
·
Nov 24, 2023

Prior-Aligned Data Cleaning for Tabular Foundation Models

Tabular Foundation Models (TFMs) achieve state-of-the-art zero-shot accuracy on small tabular datasets by meta-learning over synthetic data-generating processes -- making them highly attractive for practitioners who cannot afford large annotated corpora. However, their in-context learning mechanism assumes approximately clean inputs: missing values, outliers, and duplicates in the real-world data create a prior mismatch that degrades both accuracy and confidence calibration simultaneously. Correcting this mismatch requires sequential decisions over cleaning operators whose interactions no static preprocessing rule can anticipate -a natural fit for reinforcement learning~(RL). We introduce L2C2, the first deep RL framework framing tabular data cleaning as prior alignment: a learned policy sequences operators to minimize the distributional gap between dirty input and the TFM's synthetic prior. Six experiments on ten OpenML benchmark datasets establish: 1) three of seven reward designs collapse to degenerate trivial cleaning strategies -- principled reward engineering is scientifically non-trivial; 2) the novel TFMAwareReward reward we propose selects structurally distinct pipelines on 4/10 datasets and achieves higher TabPFN accuracy on those diverging cases (mean 0.851 vs. 0.843; Wilcoxon p=0.063, n=4) while never underperforming; 3) parameterized cleaning actions improve best-found pipeline reward on 9/10 datasets (Wilcoxon p=0.004); and 4) a policy pre-trained on one single source dataset exceeds scratch training at the 2,000-step fine-tuning checkpoint on all three held-out datasets (up to +28.8% after full fine-tuning) demonstrating cross-dataset transfer of prior-alignment knowledge. These findings establish that prior alignment is a principled data preparation strategy for TFM deployment on real-world tabular data.

  • 1 authors
·
Apr 27 2

The Simons Observatory: Combining cross-spectral foreground cleaning with multitracer $B$-mode delensing for improved constraints on inflation

The Simons Observatory (SO), due to start full science operations in early 2025, aims to set tight constraints on inflationary physics by inferring the tensor-to-scalar ratio r from measurements of CMB polarization B-modes. Its nominal design targets a precision σ(r=0) leq 0.003 without delensing. Achieving this goal and further reducing uncertainties requires the mitigation of other sources of large-scale B-modes such as Galactic foregrounds and weak gravitational lensing. We present an analysis pipeline aiming to estimate r by including delensing within a cross-spectral likelihood, and demonstrate it on SO-like simulations. Lensing B-modes are synthesised using internal CMB lensing reconstructions as well as Planck-like CIB maps and LSST-like galaxy density maps. This B-mode template is then introduced into SO's power-spectrum-based foreground-cleaning algorithm by extending the likelihood function to include all auto- and cross-spectra between the lensing template and the SAT B-modes. Within this framework, we demonstrate the equivalence of map-based and cross-spectral delensing and use it to motivate an optimized pixel-weighting scheme for power spectrum estimation. We start by validating our pipeline in the simplistic case of uniform foreground spectral energy distributions (SEDs). In the absence of primordial B-modes, σ(r) decreases by 37% as a result of delensing. Tensor modes at the level of r=0.01 are successfully detected by our pipeline. Even with more realistic foreground models including spatial variations in the dust and synchrotron spectral properties, we obtain unbiased estimates of r by employing the moment-expansion method. In this case, delensing-related improvements range between 27% and 31%. These results constitute the first realistic assessment of the delensing performance at SO's nominal sensitivity level. (Abridged)

  • 19 authors
·
Sep 9, 2024

CER-HV: A CER-Based Human-in-the-Loop Framework for Cleaning Datasets Applied to Arabic-Script HTR

Handwritten text recognition (HTR) for Arabic-script languages still lags behind Latin-script HTR, despite recent advances in model architectures, datasets, and benchmarks. We show that data quality is a significant limiting factor in many published datasets and propose CER-HV (CER-based Ranking with Human Verification) as a framework to detect and clean label errors. CER-HV combines a CER-based noise detector, built on a carefully configured Convolutional Recurrent Neural Network (CRNN) with early stopping to avoid overfitting noisy samples, and a human-in-the-loop (HITL) step that verifies high-ranking samples. The framework reveals that several existing datasets contain previously underreported problems, including transcription, segmentation, orientation, and non-text content errors. These have been identified with up to 90 percent precision in the Muharaf and 80-86 percent in the PHTI datasets. We also show that our CRNN achieves state-of-the-art performance across five of the six evaluated datasets, reaching 8.45 percent Character Error Rate (CER) on KHATT (Arabic), 8.26 percent on PHTI (Pashto), 10.66 percent on Ajami, and 10.11 percent on Muharaf (Arabic), all without any data cleaning. We establish a new baseline of 11.3 percent CER on the PHTD (Persian) dataset. Applying CER-HV improves the evaluation CER by 0.3-0.6 percent on the cleaner datasets and 1.0-1.8 percent on the noisier ones. Although our experiments focus on documents written in an Arabic-script language, including Arabic, Persian, Urdu, Ajami, and Pashto, the framework is general and can be applied to other text recognition datasets.

  • 3 authors
·
Jan 23

DISGAN: Wavelet-informed Discriminator Guides GAN to MRI Super-resolution with Noise Cleaning

MRI super-resolution (SR) and denoising tasks are fundamental challenges in the field of deep learning, which have traditionally been treated as distinct tasks with separate paired training data. In this paper, we propose an innovative method that addresses both tasks simultaneously using a single deep learning model, eliminating the need for explicitly paired noisy and clean images during training. Our proposed model is primarily trained for SR, but also exhibits remarkable noise-cleaning capabilities in the super-resolved images. Instead of conventional approaches that introduce frequency-related operations into the generative process, our novel approach involves the use of a GAN model guided by a frequency-informed discriminator. To achieve this, we harness the power of the 3D Discrete Wavelet Transform (DWT) operation as a frequency constraint within the GAN framework for the SR task on magnetic resonance imaging (MRI) data. Specifically, our contributions include: 1) a 3D generator based on residual-in-residual connected blocks; 2) the integration of the 3D DWT with 1times 1 convolution into a DWT+conv unit within a 3D Unet for the discriminator; 3) the use of the trained model for high-quality image SR, accompanied by an intrinsic denoising process. We dub the model "Denoising Induced Super-resolution GAN (DISGAN)" due to its dual effects of SR image generation and simultaneous denoising. Departing from the traditional approach of training SR and denoising tasks as separate models, our proposed DISGAN is trained only on the SR task, but also achieves exceptional performance in denoising. The model is trained on 3D MRI data from dozens of subjects from the Human Connectome Project (HCP) and further evaluated on previously unseen MRI data from subjects with brain tumours and epilepsy to assess its denoising and SR performance.

  • 6 authors
·
Aug 23, 2023