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Nov 11

SWHForest: A Structural Curation and Search Layer for Large-Scale Code Corpora

Pre-training code language models relies on massive code corpora usually streamed over the internet. However, researchers rarely need a multi-terabyte archive in its entirety; instead, their workflow centers on curated subsets: selecting well-documented files, filtering out repetitive boilerplate, auditing for benchmark contamination, or retrieving specific code patterns. Yet, because modern corpora are typically published as file pointers and basic attributes rather than source text, no general structural layer exists to select which files to download: curating a subset requires downloading and parsing millions of files first just to discard most of them. We present SWHForest, an open-source framework and public dataset that provides this missing structural layer for any pointer-based corpus without redistributing source code. A single pass over the archive parses each file into an AST and immediately discards the source text, keeping only its structural summary. Queried locally or exposed by archive providers as a server-side filtering API, SWHForest selects matching files first (via SQL or index intersection) and downloads only surviving candidates. Across the ten largest languages of Stack-Edu (52.1M unique files, 341M definitions), SWHForest answers curation queries in milliseconds while cutting downloads by 46-72%, reducing live structural searches from hours of per-language streaming to seconds or minutes.

  • 4 authors
·
Nov 7

UNBIND: UNlearning By INference-time Directional Steering for Code LLMs

Code large language models acquire programming capabilities from large code corpora, but can also memorize implementations that later require removal. Code unlearning is needed to control their continued reproduction when copyright or security concerns arise. However, targeted and retained code share computational patterns, creating a tension between forgetting specific implementations and preserving general programming ability. We propose UNBIND, a code unlearning framework that separately considers which hidden states correspond to the target code and how to suppress its reproduction. By constructing separate directions for these objectives, UNBIND achieves selective unlearning at inference time while keeping model weights fixed. Our evaluation covers fourteen baselines across two code models and two corpora. UNBIND achieves the highest joint forgetting and utility score in every setting. It reduces target code reproduction by 97.3\% to 99.1\% as measured by F-BLEU, with at most two fewer HumanEval+ and six fewer MBPP+ problems solved than the original models. In repeated extraction tests under a fixed budget, the number of targets yielding exact spans of at least 50 tokens falls from 188--262 to 0--2 out of 300 per setting. No extracted span reaches 100 tokens, and the mean best recovery ratio ranges from 0.43\% to 6.45\%. Multilingual and related-code evaluations further show effective forgetting with limited impact on useful programming capabilities, supporting UNBIND as a practical approach to selective code unlearning.

  • 10 authors
·
Sep 27

CodeRL+: Improving Code Generation via Reinforcement with Execution Semantics Alignment

While Large Language Models (LLMs) excel at code generation by learning from vast code corpora, a fundamental semantic gap remains between their training on textual patterns and the goal of functional correctness, which is governed by formal execution semantics. Reinforcement Learning with Verifiable Rewards (RLVR) approaches attempt to bridge this gap using outcome rewards from executing test cases. However, solely relying on binary pass/fail signals is inefficient for establishing a well-aligned connection between the textual representation of code and its execution semantics, especially for subtle logical errors within the code. In this paper, we propose CodeRL+, a novel approach that integrates execution semantics alignment into the RLVR training pipeline for code generation. CodeRL+ enables the model to infer variable-level execution trajectory, providing a direct learning signal of execution semantics. CodeRL+ can construct execution semantics alignment directly using existing on-policy rollouts and integrates seamlessly with various RL algorithms. Extensive experiments demonstrate that CodeRL+ outperforms post-training baselines (including RLVR and Distillation), achieving a 4.6% average relative improvement in pass@1. CodeRL+ generalizes effectively to other coding tasks, yielding 15.5% and 4.4% higher accuracy on code-reasoning and test-output-generation benchmarks, respectively. CodeRL+ shows strong applicability across diverse RL algorithms and LLMs. Furthermore, probe analyses provide compelling evidence that CodeRL+ strengthens the alignment between code's textual representations and its underlying execution semantics.

  • 13 authors
·
Oct 21, 2025

Rethinking Negative Pairs in Code Search

Recently, contrastive learning has become a key component in fine-tuning code search models for software development efficiency and effectiveness. It pulls together positive code snippets while pushing negative samples away given search queries. Among contrastive learning, InfoNCE is the most widely used loss function due to its better performance. However, the following problems in negative samples of InfoNCE may deteriorate its representation learning: 1) The existence of false negative samples in large code corpora due to duplications. 2). The failure to explicitly differentiate between the potential relevance of negative samples. As an example, a bubble sorting algorithm example is less ``negative'' than a file saving function for the quick sorting algorithm query. In this paper, we tackle the above problems by proposing a simple yet effective Soft-InfoNCE loss that inserts weight terms into InfoNCE. In our proposed loss function, we apply three methods to estimate the weights of negative pairs and show that the vanilla InfoNCE loss is a special case of Soft-InfoNCE. Theoretically, we analyze the effects of Soft-InfoNCE on controlling the distribution of learnt code representations and on deducing a more precise mutual information estimation. We furthermore discuss the superiority of proposed loss functions with other design alternatives. Extensive experiments demonstrate the effectiveness of Soft-InfoNCE and weights estimation methods under state-of-the-art code search models on a large-scale public dataset consisting of six programming languages. Source code is available at https://github.com/Alex-HaochenLi/Soft-InfoNCE.

  • 4 authors
·
Oct 12, 2023

CodeT5+: Open Code Large Language Models for Code Understanding and Generation

Large language models (LLMs) pretrained on vast source code have achieved prominent progress in code intelligence. However, existing code LLMs have two main limitations in terms of architecture and pretraining tasks. First, they often adopt a specific architecture (encoder-only or decoder-only) or rely on a unified encoder-decoder network for different downstream tasks. The former paradigm is limited by inflexibility in applications while in the latter, the model is treated as a single system for all tasks, leading to suboptimal performance on a subset of tasks. Secondly, they often employ a limited set of pretraining objectives which might not be relevant to some downstream tasks and hence result in substantial performance degrade. To address these limitations, we propose ``CodeT5+'', a family of encoder-decoder LLMs for code in which component modules can be flexibly combined to suit a wide range of downstream code tasks. Such flexibility is enabled by our proposed mixture of pretraining objectives to mitigate the pretrain-finetune discrepancy. These objectives cover span denoising, contrastive learning, text-code matching, and causal LM pretraining tasks, on both unimodal and bimodal multilingual code corpora. Furthermore, we propose to initialize CodeT5+ with frozen off-the-shelf LLMs without training from scratch to efficiently scale up our models, and explore instruction-tuning to align with natural language instructions. We extensively evaluate CodeT5+ on over 20 code-related benchmarks in different settings, including zero-shot, finetuning, and instruction-tuning. We observe state-of-the-art (SoTA) model performance on various code-related tasks, such as code generation and completion, math programming, and text-to-code retrieval tasks. Particularly, our instruction-tuned CodeT5+ 16B achieves new SoTA results on HumanEval code generation task against other open code LLMs.

  • 6 authors
·
May 13, 2023 2

Multimodal OCR: Parse Anything from Documents

We present Multimodal OCR (MOCR), a document parsing paradigm that jointly parses text and graphics into unified textual representations. Unlike conventional OCR systems that focus on text recognition and leave graphical regions as cropped pixels, our method, termed dots.mocr, treats visual elements such as charts, diagrams, tables, and icons as first-class parsing targets, enabling systems to parse documents while preserving semantic relationships across elements. It offers several advantages: (1) it reconstructs both text and graphics as structured outputs, enabling more faithful document reconstruction; (2) it supports end-to-end training over heterogeneous document elements, allowing models to exploit semantic relations between textual and visual components; and (3) it converts previously discarded graphics into reusable code-level supervision, unlocking multimodal supervision embedded in existing documents. To make this paradigm practical at scale, we build a comprehensive data engine from PDFs, rendered webpages, and native SVG assets, and train a compact 3B-parameter model through staged pretraining and supervised fine-tuning. We evaluate dots.mocr from two perspectives: document parsing and structured graphics parsing. On document parsing benchmarks, it ranks second only to Gemini 3 Pro on our OCR Arena Elo leaderboard, surpasses existing open-source document parsing systems, and sets a new state of the art of 83.9 on olmOCR Bench. On structured graphics parsing, dots.mocr achieves higher reconstruction quality than Gemini 3 Pro across image-to-SVG benchmarks, demonstrating strong performance on charts, UI layouts, scientific figures, and chemical diagrams. These results show a scalable path toward building large-scale image-to-code corpora for multimodal pretraining. Code and models are publicly available at https://github.com/rednote-hilab/dots.mocr.

  • 25 authors
·
Mar 13 6

SIEVE: A Parameterized GitHub Corpus Builder for Software Engineering Research

Software engineering research increasingly relies on large, richly annotated corpora of real-world code. Still, researchers typically assemble these with ad-hoc scripts or static, pre-built datasets that offer no control over corpus composition. This leaves a gap for a reusable tool that goes below the repository level and builds annotated, function- and class-level code corpora under researcher-specified criteria. We present SIEVE (Software Ingestion & Extraction for Verifiable Evaluation), an open-source, parameterized GitHub corpus builder that, unlike repository-level mining tools, works at code granularity: it locates individual functions, methods, and classes in repositories and extracts them as records, giving direct control over corpus construction based on several criteria, including widely used programming languages (Python, Java, JavaScript, C++), repository quality, and creation date. To support software engineering research and LLM evaluation on real-world code, SIEVE extracts CodeSearchNet- and OpenClassGen-compatible records, each annotated with 22 structural metrics and AST-derived features, and optionally with a CodeBERT-based P(AI-generated) score (F1=0.9478, AUROC=0.9902), alongside the third-party dependencies declared in each repository's package manifest. These annotations enable researchers to conduct structural analyses, investigate code dependencies, assess AI-generated code, and construct customized benchmarks for evaluating LLMs, including under temporal constraints. A manual validation of 400 records in four languages and two granularities shows 100% accuracy in code metrics and import detection, 99.0% in source completeness, and 99.5% in metadata accuracy. SIEVE is publicly available with a live demo at https://mrahman2025-sieve.hf.space.

  • 3 authors
·
Oct 14

Revisiting Pre-trained Language Models for Vulnerability Detection

The rapid advancement of pre-trained language models (PLMs) has demonstrated promising results for various code-related tasks. However, their effectiveness in detecting real-world vulnerabilities remains a critical challenge. % for the security community. While existing empirical studies evaluate PLMs for vulnerability detection (VD), their inadequate consideration in data preparation, evaluation setups, and experimental settings undermines the accuracy and comprehensiveness of evaluations. This paper introduces RevisitVD, an extensive evaluation of 17 PLMs spanning smaller code-specific PLMs and large-scale PLMs using newly constructed datasets. Specifically, we compare the performance of PLMs under both fine-tuning and prompt engineering, assess their effectiveness and generalizability across various training and testing settings, and analyze their robustness against code normalization, abstraction, and semantic-preserving transformations. Our findings reveal that, for VD tasks, PLMs incorporating pre-training tasks designed to capture the syntactic and semantic patterns of code outperform both general-purpose PLMs and those solely pre-trained or fine-tuned on large code corpora. However, these models face notable challenges in real-world scenarios, such as difficulties in detecting vulnerabilities with complex dependencies, handling perturbations introduced by code normalization and abstraction, and identifying semantic-preserving vulnerable code transformations. Also, the truncation caused by the limited context windows of PLMs can lead to a non-negligible amount of labeling errors. This study underscores the importance of thorough evaluations of model performance in practical scenarios and outlines future directions to help enhance the effectiveness of PLMs for realistic VD applications.

  • 5 authors
·
Jul 22, 2025

COMEX: A Tool for Generating Customized Source Code Representations

Learning effective representations of source code is critical for any Machine Learning for Software Engineering (ML4SE) system. Inspired by natural language processing, large language models (LLMs) like Codex and CodeGen treat code as generic sequences of text and are trained on huge corpora of code data, achieving state of the art performance on several software engineering (SE) tasks. However, valid source code, unlike natural language, follows a strict structure and pattern governed by the underlying grammar of the programming language. Current LLMs do not exploit this property of the source code as they treat code like a sequence of tokens and overlook key structural and semantic properties of code that can be extracted from code-views like the Control Flow Graph (CFG), Data Flow Graph (DFG), Abstract Syntax Tree (AST), etc. Unfortunately, the process of generating and integrating code-views for every programming language is cumbersome and time consuming. To overcome this barrier, we propose our tool COMEX - a framework that allows researchers and developers to create and combine multiple code-views which can be used by machine learning (ML) models for various SE tasks. Some salient features of our tool are: (i) it works directly on source code (which need not be compilable), (ii) it currently supports Java and C#, (iii) it can analyze both method-level snippets and program-level snippets by using both intra-procedural and inter-procedural analysis, and (iv) it is easily extendable to other languages as it is built on tree-sitter - a widely used incremental parser that supports over 40 languages. We believe this easy-to-use code-view generation and customization tool will give impetus to research in source code representation learning methods and ML4SE. Tool: https://pypi.org/project/comex - GitHub: https://github.com/IBM/tree-sitter-codeviews - Demo: https://youtu.be/GER6U87FVbU

  • 7 authors
·
Jul 10, 2023

Decouple Searching from Training: Scaling Data Mixing via Model Merging for Large Language Model Pre-training

Determining an effective data mixture is a key factor in Large Language Model (LLM) pre-training, where models must balance general competence with proficiency on hard tasks such as math and code. However, identifying an optimal mixture remains an open challenge, as existing approaches either rely on unreliable tiny-scale proxy experiments or require prohibitively expensive large-scale exploration. To address this, we propose Decouple Searching from Training Mix (DeMix), a novel framework that leverages model merging to predict optimal data ratios. Instead of training proxy models for every sampled mixture, DeMix trains component models on candidate datasets at scale and derives data mixture proxies via weighted model merging. This paradigm decouples search from training costs, enabling evaluation of unlimited sampled mixtures without extra training burden and thus facilitating better mixture discovery through more search trials. Extensive experiments demonstrate that DeMix breaks the trade-off between sufficiency, accuracy and efficiency, obtaining the optimal mixture with higher benchmark performance at lower search cost. Additionally, we release the DeMix Corpora, a comprehensive 22T-token dataset comprising high-quality pre-training data with validated mixtures to facilitate open research. Our code and DeMix Corpora is available at https://github.com/Lucius-lsr/DeMix.

  • 9 authors
·
Jan 31 3

What Was Once Learned May Need to Be Unlearned: Machine Unlearning for Deprecated API Knowledge in Large Language Models

Large language models (LLMs) for code completion may generate deprecated APIs because their pre-training corpora contain code from historical library versions. Existing approaches use inference-time intervention, model editing, or machine unlearning, but multiple plausible completions make predefined replacements restrictive. Moreover, existing studies rarely verify whether models exhibit the targeted deprecated behavior or evaluate unintended changes to other APIs. We conduct a systematic empirical study of machine unlearning for deprecated API knowledge and construct MUDAPIBench, a behavior-grounded benchmark with over 7,000 model-specific instances derived from 145 deprecated-to-up-to-date API mappings across eight Python libraries. Instances are retained only when the original model generates the target deprecated API. We evaluate eight representative unlearning methods across three code LLMs on deprecated API forgetting, up-to-date API generation, preservation of other and unrelated API behaviors, general code-generation capability, and efficiency. Results show that Gradient Difference (GD) provides the best overall trade-off, suppressing deprecated APIs while preserving other capabilities with moderate computational costs. Further analyses reveal substantial variation across libraries and show that APIs deprecated after the model's training-data cutoff are harder to forget. Layer-wise analyses indicate that GD achieves effective forgetting with comparatively controlled internal changes.

  • 7 authors
·
Sep 21

PEEK: Context Map as an Orientation Cache for Long-Context LLM Agents

Large language model (LLM) agents increasingly operate over long and recurring external contexts, like document corpora and code repositories. Across invocations, existing approaches preserve either the agent's trajectory, passive access to raw material, or task-level strategies. None of them preserves what we argue is most needed for repeated same-context workloads: reusable orientation knowledge (e.g., what the context contains, how it is organized, and which entities, constants, and schemas have historically been useful) about the recurring context itself. We introduce PEEK, a system that caches and maintains this orientation knowledge as a context map: a small, constant-sized artifact in the agent's prompt that gives it a persistent peek into the external context. The map is maintained by a programmable cache policy with three modules: a Distiller that extracts transferable knowledge from inference-time signals, a Cartographer that translates it into structured edits, and a priority-based Evictor that enforces a fixed token budget. On long-context reasoning and information aggregation, PEEK improves over strong baselines by 6.3-34.0% while using 93-145 fewer iterations and incurring 1.7-5.8x lower cost than the state-of-the-art prompt-learning framework, ACE. On context learning, PEEK improves solving rate and rubric accuracy by 6.0-14.0% and 7.8-12.1%, respectively, at 1.4x lower cost than ACE. These gains generalize across LMs and agent architectures, including OpenAI Codex, a production-grade coding agent. Together, these results show that a context map helps long-context LLM agents interact with recurring external contexts more accurately and efficiently.

Cross-Dialect Generalization Without Retraining: Benchmarks and Evaluation of Schema-Derived Constrained Decoding for MLIR

Multi-Level Intermediate Representation (MLIR) underlies modern ML compiler infrastructure (TensorFlow, JAX/StableHLO, PyTorch Inductor, IREE), yet appears only in trace amounts in code-LM pretraining corpora. MLIR is also extensible by design: new dialects ship per application domain, so a fine-tuned model per dialect does not scale. We ask whether inference-time priors derived mechanically from each dialect's Operation Definition Specification (ODS) can substitute for gradient-based adaptation. First, we release four natural-language-to-MLIR benchmarks across three dialects - MLIR-Spec-150, Linalg-Spec-30, StableHLO-Spec-30, and StableHLO-Held-Out-200 - totaling 410 in-scope NL-to-MLIR pairs, plus a 25-program out-of-grammar stress set and a hand-authored n=30 functional reference set, shipped under Apache-2.0 with Gebru datasheets and Croissant 1.0 metadata. Second, we build a three-layer schema-derived constraint stack: a CFG over op signatures(C1), type-domain splits from an ODS-extracted type lattice (C2), and an SSA-scope validator driving five-retry rejection sampling (C3). Porting from arith+func+memref+linalg to StableHLO required no new constraint-layer code. On dialects whose verifier semantics are dominated by structural constraints, schema-derived priors let SmolLM2-1.7B match or exceed 15B-34B code LMs at 8-25x the per-generation speed: on linalg, SmolLM2 reaches 80.0% verify-valid (three-seed mean, n=125), beating CodeLlama-34B, Granite-Code-34B, and StarCoder2-15B by 21-44 percentage points with non-overlapping CIs. On arith+func and on the templated parametric StableHLO-Held-Out-200, where verifier semantics turn on attribute values rather than structure, the same baselines match or beat the SLM; we scope these as non-win cells. We release benchmarks, decoder, all per-prompt generations, and a reproducibility Docker image.

  • 1 authors
·
May 13

CodeSearchNet Challenge: Evaluating the State of Semantic Code Search

Semantic code search is the task of retrieving relevant code given a natural language query. While related to other information retrieval tasks, it requires bridging the gap between the language used in code (often abbreviated and highly technical) and natural language more suitable to describe vague concepts and ideas. To enable evaluation of progress on code search, we are releasing the CodeSearchNet Corpus and are presenting the CodeSearchNet Challenge, which consists of 99 natural language queries with about 4k expert relevance annotations of likely results from CodeSearchNet Corpus. The corpus contains about 6 million functions from open-source code spanning six programming languages (Go, Java, JavaScript, PHP, Python, and Ruby). The CodeSearchNet Corpus also contains automatically generated query-like natural language for 2 million functions, obtained from mechanically scraping and preprocessing associated function documentation. In this article, we describe the methodology used to obtain the corpus and expert labels, as well as a number of simple baseline solutions for the task. We hope that CodeSearchNet Challenge encourages researchers and practitioners to study this interesting task further and will host a competition and leaderboard to track the progress on the challenge. We are also keen on extending CodeSearchNet Challenge to more queries and programming languages in the future.

  • 5 authors
·
Sep 20, 2019 1

CoCoSoDa: Effective Contrastive Learning for Code Search

Code search aims to retrieve semantically relevant code snippets for a given natural language query. Recently, many approaches employing contrastive learning have shown promising results on code representation learning and greatly improved the performance of code search. However, there is still a lot of room for improvement in using contrastive learning for code search. In this paper, we propose CoCoSoDa to effectively utilize contrastive learning for code search via two key factors in contrastive learning: data augmentation and negative samples. Specifically, soft data augmentation is to dynamically masking or replacing some tokens with their types for input sequences to generate positive samples. Momentum mechanism is used to generate large and consistent representations of negative samples in a mini-batch through maintaining a queue and a momentum encoder. In addition, multimodal contrastive learning is used to pull together representations of code-query pairs and push apart the unpaired code snippets and queries. We conduct extensive experiments to evaluate the effectiveness of our approach on a large-scale dataset with six programming languages. Experimental results show that: (1) CoCoSoDa outperforms 14 baselines and especially exceeds CodeBERT, GraphCodeBERT, and UniXcoder by 13.3%, 10.5%, and 5.9% on average MRR scores, respectively. (2) The ablation studies show the effectiveness of each component of our approach. (3) We adapt our techniques to several different pre-trained models such as RoBERTa, CodeBERT, and GraphCodeBERT and observe a significant boost in their performance in code search. (4) Our model performs robustly under different hyper-parameters. Furthermore, we perform qualitative and quantitative analyses to explore reasons behind the good performance of our model.

  • 8 authors
·
Apr 7, 2022

LinCE: A Centralized Benchmark for Linguistic Code-switching Evaluation

Recent trends in NLP research have raised an interest in linguistic code-switching (CS); modern approaches have been proposed to solve a wide range of NLP tasks on multiple language pairs. Unfortunately, these proposed methods are hardly generalizable to different code-switched languages. In addition, it is unclear whether a model architecture is applicable for a different task while still being compatible with the code-switching setting. This is mainly because of the lack of a centralized benchmark and the sparse corpora that researchers employ based on their specific needs and interests. To facilitate research in this direction, we propose a centralized benchmark for Linguistic Code-switching Evaluation (LinCE) that combines ten corpora covering four different code-switched language pairs (i.e., Spanish-English, Nepali-English, Hindi-English, and Modern Standard Arabic-Egyptian Arabic) and four tasks (i.e., language identification, named entity recognition, part-of-speech tagging, and sentiment analysis). As part of the benchmark centralization effort, we provide an online platform at ritual.uh.edu/lince, where researchers can submit their results while comparing with others in real-time. In addition, we provide the scores of different popular models, including LSTM, ELMo, and multilingual BERT so that the NLP community can compare against state-of-the-art systems. LinCE is a continuous effort, and we will expand it with more low-resource languages and tasks.

  • 3 authors
·
May 8, 2020

CodeS: Towards Building Open-source Language Models for Text-to-SQL

Language models have shown promising performance on the task of translating natural language questions into SQL queries (Text-to-SQL). However, most of the state-of-the-art (SOTA) approaches rely on powerful yet closed-source large language models (LLMs), such as ChatGPT and GPT-4, which may have the limitations of unclear model architectures, data privacy risks, and expensive inference overheads. To address the limitations, we introduce CodeS, a series of pre-trained language models with parameters ranging from 1B to 15B, specifically designed for the text-to-SQL task. CodeS is a fully open-source language model, which achieves superior accuracy with much smaller parameter sizes. This paper studies the research challenges in building CodeS. To enhance the SQL generation abilities of CodeS, we adopt an incremental pre-training approach using a specifically curated SQL-centric corpus. Based on this, we address the challenges of schema linking and rapid domain adaptation through strategic prompt construction and a bi-directional data augmentation technique. We conduct comprehensive evaluations on multiple datasets, including the widely used Spider benchmark, the newly released BIRD benchmark, robustness-diagnostic benchmarks such as Spider-DK, Spider-Syn, Spider-Realistic, and Dr.Spider, as well as two real-world datasets created for financial and academic applications. The experimental results show that our CodeS achieves new SOTA accuracy and robustness on nearly all challenging text-to-SQL benchmarks.

  • 10 authors
·
Feb 26, 2024

MLCPD: A Unified Multi-Language Code Parsing Dataset with Universal AST Schema

We introduce the MultiLang Code Parser Dataset (MLCPD), a large-scale, language-agnostic dataset unifying syntactic and structural representations of code across ten major programming languages. MLCPD contains over seven million parsed source files normalized under our proposed universal Abstract Syntax Tree (AST) schema, enabling consistent cross-language reasoning, structural learning, and multilingual software analysis. Unlike existing corpora that focus purely on token-level code or isolated parsers, MLCPD provides both hierarchical tree representations and rich metadata for every file, ensuring lossless syntactic coverage and structural uniformity. Each entry includes a normalized schema, language-level metadata, and abstracted node semantics stored in Parquet format for scalable retrieval. Empirical analyses reveal strong cross-language structural regularities-demonstrating that syntactic graphs from languages as diverse as Python, Java, and Go can be aligned under a shared schema. We release the dataset publicly on Hugging Face and the accompanying codebase on GitHub, which includes complete pipelines for dataset reproduction, grammar compilation, and a visualization tool for exploring the unified AST across languages. Together, these resources establish MLCPD as an open, reproducible foundation for future research in cross-language representation learning and program analysis.

  • 2 authors
·
Oct 18, 2025

Code as a Weapon: A Consensus-Labeled Prompt Bank for Measuring Coding-Model Compliance with Malicious-Code Requests

A general-purpose language model that answers a harmful question returns text; a coding model that complies with a malicious request can return a working weapon -- a keylogger, a ransomware stub, an exploit that runs as written. This asymmetry in the severity of a single act of compliance implies coding-specialized models should clear a higher refusal bar than general-purpose chat models, not a lower one, yet the field cannot presently tell whether they do. Refusal benchmarks for malicious code are fragmented: they mix requests for executable software (ready-to-run weapons) with requests for harmful security knowledge (information a human must still operationalise) and report refusal rates over non-comparable corpora, so no single statistic measures the property that actually matters. This paper introduces an expanded consensus-labeled prompt bank that distinguishes between these two request types and provides a construct-stable substrate for cross-corpus coding-model compliance measurement. Eight corpora (ASTRA, CySecBench, AdvBench/harmful_behaviors, JailbreakBench, MalwareBench, RedCode, RMCBench, Scam2Prompt) are consolidated and classified under a five-judge consensus protocol (6,675 prompts x 5 judges = 33,375 calls). The panel reaches Fleiss' kappa = 0.767 [95% CI 0.755, 0.777] ("substantial"); 95.0% of prompts draw at least four agreeing judges, 76.9% are unanimous, and the panel reproduces the earlier four-corpus release at Cohen's kappa = 0.952 on the 3,133 shared prompts. The released bank comprises 4,748 consensus-CODE prompts (executable malicious code requests) and 1,923 consensus-KNOWLEDGE prompts (harmful security knowledge requests). The bank is the validated instrument the field has lacked: a reliability-quantified basis for testing whether coding models meet the stricter refusal standard their executable output demands.

  • 2 authors
·
May 26

TenetBench: A Clause-Anchored Russian Corpus for Evaluating Language Models against Professional Codes of Ethics

Codes of professional ethics guide and restrict specialists, who increasingly work with assistants built on large language models. Such an assistant can breach the user's code, or help the user breach it, without the user noticing. Evaluations reporting broad categories of harm cannot show how often this happens or which provision is breached. TenetBench pairs 3,433 requests conflicting with clauses of fifteen Russian-language professional codes with benign twins that differ only in the legitimacy of what is asked. An automated pipeline generates the tasks from the text of a code, so the corpus grows with every code added and a provision yields new tasks on every run. It also produced tasks and human-validated verdicts from two English codes of other jurisdictions. In human validation of the frozen pipeline, specialists rated 0.995 of the conflicting tasks plausible, and the model judge agreed with the adjudicated label at Gwet's AC1 of at least 0.894 on 1,860 elements. We evaluated fourteen model and reasoning-mode combinations on whether they produce the conflicting text, decline or warn. Eleven of the fourteen produce conflicting content on most such requests, mostly without a warning, and nearly three warnings in four accompany conflicting content. The models that conform more do so by declining while still serving the legitimate twin, and enabling reasoning halved the refusals of two models. We hope the dataset and pipeline will help evaluate how language models observe professional norms and let diagnostic datasets be built for particular professions and organisations.

  • 5 authors
·
Oct 20 6

Parallel Corpora for Machine Translation in Low-resource Indic Languages: A Comprehensive Review

Parallel corpora play an important role in training machine translation (MT) models, particularly for low-resource languages where high-quality bilingual data is scarce. This review provides a comprehensive overview of available parallel corpora for Indic languages, which span diverse linguistic families, scripts, and regional variations. We categorize these corpora into text-to-text, code-switched, and various categories of multimodal datasets, highlighting their significance in the development of robust multilingual MT systems. Beyond resource enumeration, we critically examine the challenges faced in corpus creation, including linguistic diversity, script variation, data scarcity, and the prevalence of informal textual content.We also discuss and evaluate these corpora in various terms such as alignment quality and domain representativeness. Furthermore, we address open challenges such as data imbalance across Indic languages, the trade-off between quality and quantity, and the impact of noisy, informal, and dialectal data on MT performance. Finally, we outline future directions, including leveraging cross-lingual transfer learning, expanding multilingual datasets, and integrating multimodal resources to enhance translation quality. To the best of our knowledge, this paper presents the first comprehensive review of parallel corpora specifically tailored for low-resource Indic languages in the context of machine translation.

  • 2 authors
·
Mar 2, 2025

What Breaks When LLMs Code? Characterizing Operational Safety Failures of Agentic Code Assistants

Autonomous coding agents built on large language models (LLMs) are rapidly being integrated into development workflows, yet their operational safety properties remain poorly understood beyond evaluations of explicitly malicious inputs. In practice, high-impact failures arise during benign, goal-directed use through environment breakage, fabricated success reports, etc. that current benchmarks do not capture. What categories of operational safety failures actually occur when coding agents are used for everyday development tasks and what is their impact? We present an incident-driven empirical study grounded in two complementary evidence streams. We screen 68,816 papers from 22 premier venues, curating 185 safety-relevant studies, and mine 16,586 GitHub issues from widely deployed LLM-powered coding tools, manually confirming 547 genuine safety failures. Applying systematic open coding over both corpora, we derive a multi-dimensional safety taxonomy of 33 operational risk types organized across seven dimensions, and annotate each incident with contributing factors, task context, severity, and downstream impact. Our findings show that coding-agent failures are often severe, with 326 of 547 incidents rated high or critical. The dominant risks are constraint violations, destructive operations, authorization bypasses, and deception, and over 65% of incidents arise in bug fixing and setup or configuration, patterns largely missing from prior literature. These results have direct implications for SE tool designers and benchmark developers: guardrails must go beyond adversarial-prompt defenses to enforce environmental constraints, failure transparency, and safe-halt behaviors.

  • 2 authors
·
May 28

CodePivot: Bootstrapping Multilingual Transpilation in LLMs via Reinforcement Learning without Parallel Corpora

Transpilation, or code translation, aims to convert source code from one programming language (PL) to another. It is beneficial for many downstream applications, from modernizing large legacy codebases to augmenting data for low-resource PLs. Recent large language model (LLM)-based approaches have demonstrated immense potential for code translation. Among these approaches, training-based methods are particularly important because LLMs currently do not effectively adapt to domain-specific settings that suffer from a lack of knowledge without targeted training. This limitation is evident in transpilation tasks involving low-resource PLs. However, existing training-based approaches rely on a pairwise transpilation paradigm, making it impractical to support a diverse range of PLs. This limitation is particularly prominent for low-resource PLs due to a scarcity of training data. Furthermore, these methods suffer from suboptimal reinforcement learning (RL) reward formulations. To address these limitations, we propose CodePivot, a training framework that leverages Python as an intermediate representation (IR), augmented by a novel RL reward mechanism, Aggressive-Partial-Functional reward, to bootstrap the model's multilingual transpilation ability without requiring parallel corpora. Experiments involving 10 PLs show that the resulting 7B model, trained on Python-to-Others tasks, consistently improves performance across both general and low-resource PL-related transpilation tasks. It outperforms substantially larger mainstream models with hundreds of billions more parameters, such as Deepseek-R1 and Qwen3-235B-A22B-Instruct-2507, on Python-to-Others tasks and Others-to-All tasks, respectively. In addition, it outperforms its counterpart trained directly on Any-to-Any tasks on general transpilation tasks. The code and data are available at https://github.com/lishangyu-hkust/CodePivot.

  • 10 authors
·
Apr 19

Traces of Memorisation in Large Language Models for Code

Large language models have gained significant popularity because of their ability to generate human-like text and potential applications in various fields, such as Software Engineering. Large language models for code are commonly trained on large unsanitised corpora of source code scraped from the internet. The content of these datasets is memorised and can be extracted by attackers with data extraction attacks. In this work, we explore memorisation in large language models for code and compare the rate of memorisation with large language models trained on natural language. We adopt an existing benchmark for natural language and construct a benchmark for code by identifying samples that are vulnerable to attack. We run both benchmarks against a variety of models, and perform a data extraction attack. We find that large language models for code are vulnerable to data extraction attacks, like their natural language counterparts. From the training data that was identified to be potentially extractable we were able to extract 47% from a CodeGen-Mono-16B code completion model. We also observe that models memorise more, as their parameter count grows, and that their pre-training data are also vulnerable to attack. We also find that data carriers are memorised at a higher rate than regular code or documentation and that different model architectures memorise different samples. Data leakage has severe outcomes, so we urge the research community to further investigate the extent of this phenomenon using a wider range of models and extraction techniques in order to build safeguards to mitigate this issue.

  • 3 authors
·
Dec 18, 2023

Exploring and Evaluating Personalized Models for Code Generation

Large Transformer models achieved the state-of-the-art status for Natural Language Understanding tasks and are increasingly becoming the baseline model architecture for modeling source code. Transformers are usually pre-trained on large unsupervised corpora, learning token representations and transformations relevant to modeling generally available text, and are then fine-tuned on a particular downstream task of interest. While fine-tuning is a tried-and-true method for adapting a model to a new domain -- for example, question-answering on a given topic -- generalization remains an on-going challenge. In this paper, we explore and evaluate transformer model fine-tuning for personalization. In the context of generating unit tests for Java methods, we evaluate learning to personalize to a specific software project using several personalization techniques. We consider three key approaches: (i) custom fine-tuning, which allows all the model parameters to be tuned; (ii) lightweight fine-tuning, which freezes most of the model's parameters, allowing tuning of the token embeddings and softmax layer only or the final layer alone; (iii) prefix tuning, which keeps model parameters frozen, but optimizes a small project-specific prefix vector. Each of these techniques offers a trade-off in total compute cost and predictive performance, which we evaluate by code and task-specific metrics, training time, and total computational operations. We compare these fine-tuning strategies for code generation and discuss the potential generalization and cost benefits of each in various deployment scenarios.

  • 6 authors
·
Aug 29, 2022

Programming with Data: Test-Driven Data Engineering for Self-Improving LLMs from Raw Corpora

Reliably transferring specialized human knowledge from text into large language models remains a fundamental challenge in artificial intelligence. Fine-tuning on domain corpora has enabled substantial capability gains, but the process operates without feedback: when a model fails on a domain task, there is no method to diagnose what is deficient in the training data, and the only recourse is to add more data indiscriminately. Here we show that when a structured knowledge representation extracted from the source corpus serves as the shared foundation for both training data and evaluation, the complete data-engineering lifecycle maps onto the software development lifecycle in a precise and operative way: training data becomes source code specifying what the model should learn, model training becomes compilation, benchmarking becomes unit testing, and failure-driven data repair becomes debugging. Under this correspondence, model failures decompose into concept-level gaps and reasoning-chain breaks that can be traced back to specific deficiencies in the data and repaired through targeted patches, with each repair cycle producing consistent improvements across model scales and architectures without degrading general capabilities. We formalize this principle as Programming with Data and instantiate it across sixteen disciplines spanning the natural sciences, engineering, biomedicine, and the social sciences, releasing a structured knowledge base, benchmark suite, and training corpus as open resources. By demonstrating that the relationship between training data and model behaviour is structurally traceable and systematically repairable, this work establishes a principled foundation for the reliable engineering of human expertise into language models.

opendatalab OpenDataLab
·
Apr 26 4

CoIR: A Comprehensive Benchmark for Code Information Retrieval Models

Despite the substantial success of Information Retrieval (IR) in various NLP tasks, most IR systems predominantly handle queries and corpora in natural language, neglecting the domain of code retrieval. Code retrieval is critically important yet remains under-explored, with existing methods and benchmarks inadequately representing the diversity of code in various domains and tasks. Addressing this gap, we present \name (Code Information Retrieval Benchmark), a robust and comprehensive benchmark specifically designed to assess code retrieval capabilities. \name comprises ten meticulously curated code datasets, spanning eight distinctive retrieval tasks across seven diverse domains. We first discuss the construction of \name and its diverse dataset composition. Further, we evaluate nine widely used retrieval models using \name, uncovering significant difficulties in performing code retrieval tasks even with state-of-the-art systems. To facilitate easy adoption and integration within existing research workflows, \name has been developed as a user-friendly Python framework, readily installable via pip. It shares same data schema as other popular benchmarks like MTEB and BEIR, enabling seamless cross-benchmark evaluations. Through \name, we aim to invigorate research in the code retrieval domain, providing a versatile benchmarking tool that encourages further development and exploration of code retrieval systems\url{ https://github.com/CoIR-team/coir}.

  • 9 authors
·
Jul 3, 2024

Unlocking Reasoning Potential in Large Langauge Models by Scaling Code-form Planning

Despite the remarkable success of large language models (LLMs) on traditional natural language processing tasks, their planning ability remains a critical bottleneck in tackling complex multi-step reasoning tasks. Existing approaches mainly rely on prompting or task-specific fine-tuning, often suffering from poor robustness and cross-task generalization. To address the limitation, we introduce CodePlan, a scalable framework that empowers LLMs to generate and follow code-form plans -- pseudocode that outlines high-level, structured reasoning processes. By leveraging the structured and versatile nature of code, CodePlan effectively captures the rich semantics and control flows inherent to sophisticated reasoning tasks. Importantly, CodePlan allows automatic extraction of code-form plans from massive, wide-ranging text corpora without the need for curated, task-specific datasets. This enables it to scale up efficiently and improve LLM's reasoning capabilities across diverse scenarios. To train CodePlan, we construct a large-scale dataset of 2M examples that integrate code-form plans with standard prompt-response pairs from existing corpora. With minimal computation overhead during both training and inference, CodePlan achieves a 25.1\% relative improvement compared with directly generating responses, averaged across 13 challenging multi-step reasoning benchmarks, spanning mathematical reasoning, symbolic reasoning, instruction-following, multi-hop QA, and decision-making tasks. Further analysis reveals CodePlan's increasing performance gains on more complex reasoning tasks, as well as significant data efficiency thanks to its generalization ability.

  • 5 authors
·
Sep 19, 2024

ExecRepoBench: Multi-level Executable Code Completion Evaluation

Code completion has become an essential tool for daily software development. Existing evaluation benchmarks often employ static methods that do not fully capture the dynamic nature of real-world coding environments and face significant challenges, including limited context length, reliance on superficial evaluation metrics, and potential overfitting to training datasets. In this work, we introduce a novel framework for enhancing code completion in software development through the creation of a repository-level benchmark ExecRepoBench and the instruction corpora Repo-Instruct, aim at improving the functionality of open-source large language models (LLMs) in real-world coding scenarios that involve complex interdependencies across multiple files. ExecRepoBench includes 1.2K samples from active Python repositories. Plus, we present a multi-level grammar-based completion methodology conditioned on the abstract syntax tree to mask code fragments at various logical units (e.g. statements, expressions, and functions). Then, we fine-tune the open-source LLM with 7B parameters on Repo-Instruct to produce a strong code completion baseline model Qwen2.5-Coder-Instruct-C based on the open-source model. Qwen2.5-Coder-Instruct-C is rigorously evaluated against existing benchmarks, including MultiPL-E and ExecRepoBench, which consistently outperforms prior baselines across all programming languages. The deployment of can be used as a high-performance, local service for programming development\url{https://execrepobench.github.io/}.

  • 12 authors
·
Dec 16, 2024

UnitCoder: Scalable Iterative Code Synthesis with Unit Test Guidance

Large Language Models (LLMs) have demonstrated remarkable capabilities in various tasks, yet code generation remains a major challenge. Current approaches for obtaining high-quality code data primarily focus on (i) collecting large-scale pre-training data and (ii) synthesizing instruction data through prompt engineering with powerful models. While pre-training data faces quality consistency issues, instruction-based synthesis suffers from limited instruction diversity and inherent biases of LLMs. To address this gap, we introduce UnitCoder, a systematic pipeline leveraging model-generated unit tests to both guide and validate the code generation process. Combined with large-scale package-based retrieval from pre-training corpus, we generate a dataset of 500K+ verifiable programs containing diverse API calls. Evaluations on multiple Python benchmarks (BigCodeBench, HumanEval, MBPP) demonstrate that models fine-tuned on our synthetic data exhibit consistent performance improvements. Notably, Llama3.1-8B and InternLM2.5-7B improve from 31\% and 28\% to 40\% and 39\% success rates on BigCodeBench, respectively. Our work presents a scalable approach that leverages model-generated unit tests to guide the synthesis of high-quality code data from pre-training corpora, demonstrating the potential for producing diverse and high-quality post-training data at scale. All code and data will be released (https://github.com).

  • 8 authors
·
Feb 17, 2025

AgentPack: A Dataset of Code Changes, Co-Authored by Agents and Humans

Fine-tuning large language models for code editing has typically relied on mining commits and pull requests. The working hypothesis has been that commit messages describe human intent in natural language, and patches to code describe the changes that implement that intent. However, much of the previously collected data is noisy: commit messages are terse, human-written commits commingle several unrelated edits, and many commits come from simple, rule-based bots. The recent adoption of software engineering agents changes this landscape. Code changes co-authored by humans and agents tend to be more narrowly scoped and focused on clearer goals. Their commit messages, generated by LLMs, articulate intent and rationale in much greater detail. Moreover, when these changes land in public repositories, they are implicitly filtered by humans: maintainers discard low-quality commits to their projects. We present AgentPack, a corpus of 1.3M code edits co-authored by Claude Code, OpenAI Codex, and Cursor Agent across public GitHub projects up to mid-August 2025. We describe the identification and curation pipeline, quantify adoption trends of these agents, and analyze the structural properties of the edits. Finally, we show that models fine-tuned on AgentPack can outperform models trained on prior human-only commit corpora, highlighting the potential of using public data from software engineering agents to train future code-editing models.

  • 5 authors
·
Sep 26, 2025

Do not copy and paste! Rewriting strategies for code retrieval

Embedding-based code retrieval often suffers when encoders overfit to surface syntax. Prior work mitigates this by using LLMs to rephrase queries and corpora into a normalized style, but leaves two questions open: how much representational shift helps, and when is the per-query LLM call justified? We study a hierarchy of three rewriting strategies: stylistic rephrasing, NL-enriched PseudoCode, and full Natural-Language transcription, under joint query-corpus (QC, online) and corpus-only (C, offline) augmentation, across six CoIR benchmarks, five encoders, and three rewriters spanning independent model families (Qwen, DeepSeek, Mistral). We are the first to evaluate NL-enriched PseudoCode and snippet-level Natural Language as direct retrieval representations, rather than as transient intermediates. Full NL rewriting with QC yields the largest gains (+0.51 absolute NDCG@10 on CT-Contest for MoSE-18), while corpus-only rewriting degrades retrieval in 56 of 90 configurations, about 62%. We introduce two diagnostics, Delta H, token entropy, and Delta s, embedding cosine, and show that Delta H predicts retrieval gain under QC across all three rewriter families: pooled Spearman rho = +0.436, p < 0.001 on DeepSeek+Codestral; rho = +0.593 on Codestral alone; rho = +0.356 on Qwen. This establishes Delta H as a cheap, rewriter-agnostic proxy for deciding when rewriting pays off before running retrieval. Our analysis reframes LLM rewriting as a cost-benefit decision: it is most effective as a remediation layer for lightweight encoders on code-dominant queries, with diminishing returns for strong encoders or NL-heavy queries.

  • 3 authors
·
May 7 1

NESTLE: a No-Code Tool for Statistical Analysis of Legal Corpus

The statistical analysis of large scale legal corpus can provide valuable legal insights. For such analysis one needs to (1) select a subset of the corpus using document retrieval tools, (2) structuralize text using information extraction (IE) systems, and (3) visualize the data for the statistical analysis. Each process demands either specialized tools or programming skills whereas no comprehensive unified "no-code" tools have been available. Especially for IE, if the target information is not predefined in the ontology of the IE system, one needs to build their own system. Here we provide NESTLE, a no code tool for large-scale statistical analysis of legal corpus. With NESTLE, users can search target documents, extract information, and visualize the structured data all via the chat interface with accompanying auxiliary GUI for the fine-level control. NESTLE consists of three main components: a search engine, an end-to-end IE system, and a Large Language Model (LLM) that glues the whole components together and provides the chat interface. Powered by LLM and the end-to-end IE system, NESTLE can extract any type of information that has not been predefined in the IE system opening up the possibility of unlimited customizable statistical analysis of the corpus without writing a single line of code. The use of the custom end-to-end IE system also enables faster and low-cost IE on large scale corpus. We validate our system on 15 Korean precedent IE tasks and 3 legal text classification tasks from LEXGLUE. The comprehensive experiments reveal NESTLE can achieve GPT-4 comparable performance by training the internal IE module with 4 human-labeled, and 192 LLM-labeled examples. The detailed analysis provides the insight on the trade-off between accuracy, time, and cost in building such system.

  • 3 authors
·
Sep 8, 2023

Rewriting Pre-Training Data Boosts LLM Performance in Math and Code

The performance of large language models (LLMs) in program synthesis and mathematical reasoning is fundamentally limited by the quality of their pre-training corpora. We introduce two openly licensed datasets, released under the Llama 3.3 Community License, that significantly enhance LLM performance by systematically rewriting public data. SwallowCode (approximately 16.1 billion tokens) refines Python snippets from The-Stack-v2 through a novel four-stage pipeline: syntax validation, pylint-based style filtering, and a two-stage LLM rewriting process that enforces style conformity and transforms snippets into self-contained, algorithmically efficient examples. Unlike prior methods that rely on exclusionary filtering or limited transformations, our transform-and-retain approach upgrades low-quality code, maximizing data utility. SwallowMath (approximately 2.3 billion tokens) enhances Finemath-4+ by removing boilerplate, restoring context, and reformatting solutions into concise, step-by-step explanations. Within a fixed 50 billion token training budget, continual pre-training of Llama-3.1-8B with SwallowCode boosts pass@1 by +17.0 on HumanEval and +17.7 on HumanEval+ compared to Stack-Edu, surpassing the baseline model's code generation capabilities. Similarly, substituting SwallowMath yields +12.4 accuracy on GSM8K and +7.6 on MATH. Ablation studies confirm that each pipeline stage contributes incrementally, with rewriting delivering the largest gains. All datasets, prompts, and checkpoints are publicly available, enabling reproducible research and advancing LLM pre-training for specialized domains.

  • 16 authors
·
May 5, 2025 4

Fine-Tuning Qwen3-27B for C-to-Rust Code Translation: A Three-Stage Curriculum of Pretraining, Debugging-Aware SFT, and Task-Specific SFT

Translating C code into safe, idiomatic Rust is a longstanding software-engineering goal because it can eliminate entire classes of memory-safety vulnerabilities while preserving the functional behavior of legacy systems. Large language models (LLMs) have shown promise for this task but typically underperform when applied off-the-shelf, since general-purpose pretraining rarely emphasizes idiomatic Rust generation, cross-language semantic equivalence, or the ability to reason about and repair compiler/runtime feedback. In this report we describe a three-stage fine-tuning curriculum applied to Qwen3-27B that is designed to progressively specialize the model for the C-to-Rust (C2Rust) translation task: (1) continued pretraining on Rust-centric corpora to strengthen the model's prior over idiomatic Rust syntax and standard-library usage; (2) supervised fine-tuning (SFT) on the microsoft/Verus_Training_Data dataset to instill debugging and self-repair behavior over Rust code; and (3) task-specific SFT on paired C/Rust solutions derived from LeetCode problems to teach direct semantic translation. We evaluate the resulting model using the agentic, static-analysis-guided verification framework of SACTOR, which performs structure-aware, two-phase (unidiomatic to idiomatic) translation with foreign-function-interface (FFI)-based end-to-end (E2E) testing. We report success rate, idiomaticity (Clippy lint counts, unsafe-code fraction), and failure-mode analyses, and compare our fine-tuned model against baseline Qwen3-27B and other LLMs evaluated under the same framework.

  • 7 authors
·
Aug 13

Efficient and Scalable Provenance Tracking for LLM-Generated Code Snippets

Large language models (LLMs) for code completion and generation are increasingly used in software development, yet they may reproduce training examples verbatim and without authorship attribution, raising legal and ethical concerns around plagiarism and license compliance. Classical fingerprint-based plagiarism detectors based on fingerprinting, such as Winnowing, remain highly effective, yet the inspection requires comparing fragments of code to the entire training set, and their linear-time search makes them impractical for the billion-scale corpora used to train modern code LLMs. To bridge this gap, we introduce SOURCETRACKER, a 300M-parameter encoder tailored for code retrieval, together with a hybrid two-stage provenance-tracking pipeline HYBRIDSOURCETRACKER (HST). HST first narrows down a small set of candidate snippets via vector search, then re-ranks those candidates using Winnowing on exact fingerprints. We train and evaluate our system on a 10M-snippet subset of the THESTACKV2 dataset, with both verbatim and adapted snippets that emulate realistic identifier renaming. On an in vitro 100k-snippet search space with adapted queries, our hybrid approach reaches a mean reciprocal rank on par with Winnowing for 30-token fragments. Then, starting from windows >= 60 tokens, it consistently over-performs by up to 5.4% while preserving logarithmic-time query complexity. In a complementary evaluation using an LLM-based judge, we find that many retrieved snippets not labeled as ground truth are still highly similar to the expected sources, particularly with longer context windows, and thus remain useful for end users. Overall, our results demonstrate that integrating vector search with fingerprinting enables scalable, high-precision provenance tracking for code produced by LLMs.

  • 5 authors
·
May 26 2

H2LooP Spark Preview: Continual Pretraining of Large Language Models for Low-Level Embedded Systems Code

Large language models (LLMs) demonstrate strong code generation abilities in general-purpose programming languages but remain limited in specialized domains such as low-level embedded systems programming. This domain involves hardware register manipulation, vendor-specific SDKs, real-time operating system APIs, and hardware abstraction layers that are underrepresented in standard pretraining corpora. We introduce H2LooP Spark Preview, a continual pretraining (CPT) pipeline that adapts the OLMo-3-7B-a fully open language model to the embedded systems domain using BF16 LoRA with rank-stabilized scaling on 8 NVIDIA H100 GPUs. Our training corpus is constructed from repository-datasheet pairs covering 100B tokens of raw embedded systems data across 117 manufacturers, processed using the hierarchical datasheet-to-code mapping approach proposed in SpecMap (Nipane et al., 2026). The resulting curated dataset split contains 23.5B tokens across 13 embedded domains. Continual pretraining with high-rank LoRA (r=512) yields substantial gains, reducing in-domain perplexity by 70.4% and held-out repository perplexity by 66.1%. On generative code completion benchmarks spanning 13 embedded domains, our 7B model outperforms Claude Opus 4.6 and Qwen3-Coder-30B on 8 categories in token accuracy, showing that targeted continual pretraining enables smaller open-weight models to rival frontier systems on specialized technical tasks. We release the production training checkpoint on Huggingface as an open-source artifact.

  • 5 authors
·
Mar 12

No Resource, No Benchmarks, No Problem? Evaluating and Improving LLMs for Code Generation in No-Resource Languages

Large Language Models (LLMs) have significantly advanced the automation of software engineering tasks. One prominent example is code generation, where an LLM produces code in a specified programming language based on a natural language description. Most research in this area has focused on high-resource languages, such as Python or Java, which benefit from abundant training data. A smaller body of work has explored low-resource languages, which are underrepresented in training corpora. In contrast, no-resource languages for which LLMs have seen virtually no training data remain largely unstudied. These languages often emerge in industry, where organizations develop proprietary or domain-specific languages unsupported by commercial tools like GitHub Copilot. This results in the need for companies to deploy their own in-house code recommenders. To investigate possible solutions in this context, we build and release three code generation benchmarks for no-resource languages, based on two recently proposed programming languages for which very little training data is available. Using these benchmarks, we experiment several solutions to teach LLMs about no-resource languages, including prompt-based techniques as well as pre-training and fine-tuning exploiting the little data available. While further pre-training gives the largest performance gains for no-resource languages, applying it directly to instruction-tuned models harms their ability to follow instructions. To address this, we start from a base model, further pre-training it on the target language, and then inject instruction-following capabilities via weight diff transfer from an instruction model. Such an approach significantly improves code generation capabilities in no-resource settings, allowing companies to cheaply deploy a specialized instruct model without dealing with the computational cost of instruction fine-tuning.

  • 3 authors
·
Jun 14 3

Learning to Answer Semantic Queries over Code

During software development, developers need answers to queries about semantic aspects of code. Even though extractive question-answering using neural approaches has been studied widely in natural languages, the problem of answering semantic queries over code using neural networks has not yet been explored. This is mainly because there is no existing dataset with extractive question and answer pairs over code involving complex concepts and long chains of reasoning. We bridge this gap by building a new, curated dataset called CodeQueries, and proposing a neural question-answering methodology over code. We build upon state-of-the-art pre-trained models of code to predict answer and supporting-fact spans. Given a query and code, only some of the code may be relevant to answer the query. We first experiment under an ideal setting where only the relevant code is given to the model and show that our models do well. We then experiment under three pragmatic considerations: (1) scaling to large-size code, (2) learning from a limited number of examples and (3) robustness to minor syntax errors in code. Our results show that while a neural model can be resilient to minor syntax errors in code, increasing size of code, presence of code that is not relevant to the query, and reduced number of training examples limit the model performance. We are releasing our data and models to facilitate future work on the proposed problem of answering semantic queries over code.

  • 6 authors
·
Sep 17, 2022

EntityCS: Improving Zero-Shot Cross-lingual Transfer with Entity-Centric Code Switching

Accurate alignment between languages is fundamental for improving cross-lingual pre-trained language models (XLMs). Motivated by the natural phenomenon of code-switching (CS) in multilingual speakers, CS has been used as an effective data augmentation method that offers language alignment at the word- or phrase-level, in contrast to sentence-level via parallel instances. Existing approaches either use dictionaries or parallel sentences with word alignment to generate CS data by randomly switching words in a sentence. However, such methods can be suboptimal as dictionaries disregard semantics, and syntax might become invalid after random word switching. In this work, we propose EntityCS, a method that focuses on Entity-level Code-Switching to capture fine-grained cross-lingual semantics without corrupting syntax. We use Wikidata and English Wikipedia to construct an entity-centric CS corpus by switching entities to their counterparts in other languages. We further propose entity-oriented masking strategies during intermediate model training on the EntityCS corpus for improving entity prediction. Evaluation of the trained models on four entity-centric downstream tasks shows consistent improvements over the baseline with a notable increase of 10% in Fact Retrieval. We release the corpus and models to assist research on code-switching and enriching XLMs with external knowledge.

  • 3 authors
·
Oct 22, 2022

A Systematic Literature Review of Automated ICD Coding and Classification Systems using Discharge Summaries

Codification of free-text clinical narratives have long been recognised to be beneficial for secondary uses such as funding, insurance claim processing and research. The current scenario of assigning codes is a manual process which is very expensive, time-consuming and error prone. In recent years, many researchers have studied the use of Natural Language Processing (NLP), related Machine Learning (ML) and Deep Learning (DL) methods and techniques to resolve the problem of manual coding of clinical narratives and to assist human coders to assign clinical codes more accurately and efficiently. This systematic literature review provides a comprehensive overview of automated clinical coding systems that utilises appropriate NLP, ML and DL methods and techniques to assign ICD codes to discharge summaries. We have followed the Preferred Reporting Items for Systematic Reviews and Meta-Analyses(PRISMA) guidelines and conducted a comprehensive search of publications from January, 2010 to December 2020 in four academic databases- PubMed, ScienceDirect, Association for Computing Machinery(ACM) Digital Library, and the Association for Computational Linguistics(ACL) Anthology. We reviewed 7,556 publications; 38 met the inclusion criteria. This review identified: datasets having discharge summaries; NLP techniques along with some other data extraction processes, different feature extraction and embedding techniques. To measure the performance of classification methods, different evaluation metrics are used. Lastly, future research directions are provided to scholars who are interested in automated ICD code assignment. Efforts are still required to improve ICD code prediction accuracy, availability of large-scale de-identified clinical corpora with the latest version of the classification system. This can be a platform to guide and share knowledge with the less experienced coders and researchers.

  • 3 authors
·
Jul 11, 2021

UltraData-Code: From Raw Repositories to Algorithmically Dense and Task-Oriented Code Data

Code generation has become a core capability of large language models (LLMs), and code data is central to the pre-training process that develops it. As obtaining public code of sufficient quality becomes more difficult, further progress cannot rely on corpus expansion alone. Tiered data management instead applies increasingly targeted processing to smaller data pools, producing data states suited to different training objectives. Following this perspective, we present UltraData-Code as four connected data states spanning repository archival at L0, standardized natural code at L1, algorithmic selection at L2, and task-oriented synthesis at L3. L0 preserves repository data and provenance for reprocessing, while L1 applies scalable filtering, normalization, and near-deduplication for broad pre-training. L2 selects high-quality algorithmically relevant files using language-adaptive relevance signals and quality constraints, yielding approximately 400B tokens of UltraData-Code-L2 across 11 programming languages for focused continual pre-training. L3 converts selected implementations into structured programming exercises, yielding approximately 150B tokens of UltraData-Code-L3 across the same 11 languages for task-oriented mid-training or supervised fine-tuning (SFT). Under controlled 10B-token continual pre-training of a 1B model, L2 improves pass@1 over L1 by 7.80 percentage points (pp) on EvalPlus and 5.13pp on MultiPL-E. Replacing half of the L2 training tokens with L3 yields a further gain of 8.42pp and 8.07pp on the two benchmarks, respectively. Both gains increase when the training budget scales to 100B tokens. We have released our datasets and classifiers to support further research on LLMs.

  • 16 authors
·
Oct 8

Split, Encode and Aggregate for Long Code Search

Code search with natural language plays a crucial role in reusing existing code snippets and accelerating software development. Thanks to the Transformer-based pretraining models, the performance of code search has been improved significantly compared to traditional information retrieval (IR) based models. However, due to the quadratic complexity of multi-head self-attention, there is a limit on the input token length. For efficient training on standard GPUs like V100, existing pretrained code models, including GraphCodeBERT, CodeBERT, RoBERTa (code), take the first 256 tokens by default, which makes them unable to represent the complete information of long code that is greater than 256 tokens. Unlike long text paragraph that can be regarded as a whole with complete semantics, the semantics of long code is discontinuous as a piece of long code may contain different code modules. Therefore, it is unreasonable to directly apply the long text processing methods to long code. To tackle the long code problem, we propose SEA (Split, Encode and Aggregate for Long Code Search), which splits long code into code blocks, encodes these blocks into embeddings, and aggregates them to obtain a comprehensive long code representation. With SEA, we could directly use Transformer-based pretraining models to model long code without changing their internal structure and repretraining. Leveraging abstract syntax tree (AST) based splitting and attention-based aggregation methods, SEA achieves significant improvements in long code search performance. We also compare SEA with two sparse Trasnformer methods. With GraphCodeBERT as the encoder, SEA achieves an overall mean reciprocal ranking score of 0.785, which is 10.1% higher than GraphCodeBERT on the CodeSearchNet benchmark.

  • 7 authors
·
Aug 23, 2022

CodeCoR: An LLM-Based Self-Reflective Multi-Agent Framework for Code Generation

Code generation aims to produce code that fulfills requirements written in natural languages automatically. Large language Models (LLMs) like ChatGPT have demonstrated promising effectiveness in this area. Nonetheless, these LLMs often fail to ensure the syntactic and semantic correctness of the generated code. Recently, researchers proposed multi-agent frameworks that guide LLMs with different prompts to analyze programming tasks, generate code, perform testing in a sequential workflow. However, the performance of the workflow is not robust as the code generation depends on the performance of each agent. To address this challenge, we propose CodeCoR, a self-reflective multi-agent framework that evaluates the effectiveness of each agent and their collaborations. Specifically, for a given task description, four agents in CodeCoR generate prompts, code, test cases, and repair advice, respectively. Each agent generates more than one output and prunes away the low-quality ones. The generated code is tested in the local environment: the code that fails to pass the generated test cases is sent to the repair agent and the coding agent re-generates the code based on repair advice. Finally, the code that passes the most number of generated test cases is returned to users. Our experiments on four widely used datasets, HumanEval, HumanEval-ET, MBPP, and MBPP-ET, demonstrate that CodeCoR significantly outperforms existing baselines (e.g., CodeCoT and MapCoder), achieving an average Pass@1 score of 77.8%.

  • 3 authors
·
Jan 13, 2025