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Nov 6

SDR: Set-Distance Rewards for Radiology Report Generation

Reinforcement learning with verifiable rewards has rapidly advanced reasoning in vision--language models. However, for chest X-ray report generation, the standard rewards (i.e. exact-match accuracy and step-level processes) are incompatible because the reports consist of unordered and orthogonal findings, rather than a causal reasoning chain. We address this gap with a set-based view: each report is split into sentences and embedded by a frozen sentence transformer, yielding unordered embedding sets. We propose the use of set-to-set distances between generated and reference embeddings as continuous, permutation-invariant rewards. Across two datasets and three vision--language models (Qwen3-VL-2B/4B, Gemma3-4B), post-training with set-to-set distance based rewards via GRPO consistently outperforms supervised fine-tuning and exact-match GRPO on all headline metrics (BERTScore, RadGraph F1 and CheXbert F1 by average \%6.80, \%7.82 and \%4.45 relative improvements respectively). The same set distances also enable test-time best-of-N selection: scoring candidates by their distance to training-report embeddings outperforms random selection on our trained models as well as three closed-source LLMs (Mistral-Small, Gemini-2.5 Flash-Lite, GPT-4o-mini) with on average \%16.4 relative improvement on BERTScore. Used as a streaming signal, they support a more efficient form of test-time scaling: pruning low-scoring candidates mid-generation reduces generated tokens by over 50\% while preserving the Findings quality of full best-of-N selection. Together these results establish set-distance rewards as a unified signal for both post-training and test-time scaling in chest X-ray report generation. Our code is publicly https://anonymous.4open.science/r/Set-Distance-Rewards-CXR-BFDA{available}.

gevaertlab Gevaert Lab
·
May 29 2

Aligning benchmark datasets for table structure recognition

Benchmark datasets for table structure recognition (TSR) must be carefully processed to ensure they are annotated consistently. However, even if a dataset's annotations are self-consistent, there may be significant inconsistency across datasets, which can harm the performance of models trained and evaluated on them. In this work, we show that aligning these benchmarksx2014removing both errors and inconsistency between themx2014improves model performance significantly. We demonstrate this through a data-centric approach where we adopt a single model architecture, the Table Transformer (TATR), that we hold fixed throughout. Baseline exact match accuracy for TATR evaluated on the ICDAR-2013 benchmark is 65% when trained on PubTables-1M, 42% when trained on FinTabNet, and 69% combined. After reducing annotation mistakes and inter-dataset inconsistency, performance of TATR evaluated on ICDAR-2013 increases substantially to 75% when trained on PubTables-1M, 65% when trained on FinTabNet, and 81% combined. We show through ablations over the modification steps that canonicalization of the table annotations has a significantly positive effect on performance, while other choices balance necessary trade-offs that arise when deciding a benchmark dataset's final composition. Overall we believe our work has significant implications for benchmark design for TSR and potentially other tasks as well. All dataset processing and training code will be released.

  • 3 authors
·
Mar 1, 2023

ModernBERT is More Efficient than Conventional BERT for Chest CT Findings Classification in Japanese Radiology Reports

Objective: This study aims to evaluate and compare the performance of two Japanese language models-conventional Bidirectional Encoder Representations from Transformers (BERT) and the newer ModernBERT-in classifying findings from chest CT reports, with a focus on tokenization efficiency, processing time, and classification performance. Methods: We conducted a retrospective study using the CT-RATE-JPN dataset containing 22,778 training reports and 150 test reports. Both models were fine-tuned for multi-label classification of 18 common chest CT conditions. The training data was split in 18,222:4,556 for training and validation. Performance was evaluated using F1 scores for each condition and exact match accuracy across all 18 labels. Results: ModernBERT demonstrated superior tokenization efficiency, requiring 24.0% fewer tokens per document (258.1 vs. 339.6) compared to BERT Base. This translated to significant performance improvements, with ModernBERT completing training in 1877.67 seconds versus BERT's 3090.54 seconds (39% reduction). ModernBERT processed 38.82 samples per second during training (1.65x faster) and 139.90 samples per second during inference (1.66x faster). Despite these efficiency gains, classification performance remained comparable, with ModernBERT achieving superior F1 scores in 8 conditions, while BERT performed better in 4 conditions. Overall exact match accuracy was slightly higher for ModernBERT (74.67% vs. 72.67%), though this difference was not statistically significant (p=0.6291). Conclusion: ModernBERT offers substantial improvements in tokenization efficiency and training speed without sacrificing classification performance. These results suggest that ModernBERT is a promising candidate for clinical applications in Japanese radiology reports analysis.

  • 5 authors
·
Mar 6, 2025

L20-Edu-135M: An Auditable Single-GPU Study of Data-Efficient Small Language Modeling

Small language models are cheap to serve and feasible on local hardware, but strong public 135M-class systems are commonly trained with hundreds of billions to trillions of tokens on large clusters. We study a sharply resource-constrained regime: a complete 134.5M-parameter language-model pipeline executed on one NVIDIA L20 GPU. The released checkpoint, L20-Edu-135M, receives approximately 13B pretraining tokens: 10B FineWeb-Edu tokens followed by a 3B-token educational, mathematics, code, and reasoning mixture. We document the architecture, data gates, cross-source MinHash/LSH near-deduplication, segment deduplication, benchmark-overlap removal, throughput optimization, supervised fine-tuning (SFT) with weight interpolation, and reinforcement learning from verifiable rewards (RLVR) on GSM8K. In a self-run zero-shot six-task harness, L20-Edu-135M obtains a mean score of 0.4150. It trails SmolLM-135M (0.4767) and SmolLM2-135M (0.4917), but its mean is 87.1% of SmolLM-135M's while its nominal token count is 2.17% as large. This ratio is descriptive, not evidence of statistical equivalence or a controlled scaling law. The model exceeds several older 100M-160M public baselines under the same harness. Direct GRPO-style RLVR decreases GSM8K exact-match accuracy from 1.82% to 1.59% (192-token completions) and 1.21% (320-token completions). These single-run results identify a concrete failure mode rather than establishing a general lower bound on RLVR. The contribution is an auditable resource-constrained case study, not a state-of-the-art claim.

  • 1 authors
·
Jun 19

AECV-Bench: Benchmarking Multimodal Models on Architectural and Engineering Drawings Understanding

AEC drawings encode geometry and semantics through symbols, layout conventions, and dense annotation, yet it remains unclear whether modern multimodal and vision-language models can reliably interpret this graphical language. We present AECV-Bench, a benchmark for evaluating multimodal and vision-language models on realistic AEC artefacts via two complementary use cases: (i) object counting on 120 high-quality floor plans (doors, windows, bedrooms, toilets), and (ii) drawing-grounded document QA spanning 192 question-answer pairs that test text extraction (OCR), instance counting, spatial reasoning, and comparative reasoning over common drawing regions. Object-counting performance is reported using per-field exact-match accuracy and MAPE results, while document-QA performance is reported using overall accuracy and per-category breakdowns with an LLM-as-a-judge scoring pipeline and targeted human adjudication for edge cases. Evaluating a broad set of state-of-the-art models under a unified protocol, we observe a stable capability gradient; OCR and text-centric document QA are strongest (up to 0.95 accuracy), spatial reasoning is moderate, and symbol-centric drawing understanding - especially reliable counting of doors and windows - remains unsolved (often 0.40-0.55 accuracy) with substantial proportional errors. These results suggest that current systems function well as document assistants but lack robust drawing literacy, motivating domain-specific representations and tool-augmented, human-in-the-loop workflows for an efficient AEC automation.

  • 4 authors
·
Jan 8

Character-Level Transformer for Tajik-Persian Transliteration with a Parallel Lexical Corpus

This study addresses automatic transliteration from Tajik (Cyrillic script) to Persian (Perso-Arabic script). We present a curated, lexicographically verified parallel corpus of 52,152 Tajik--Persian words and short phrases, compiled from printed dictionaries, encyclopedic sources, and manually verified online resources. To the best of our knowledge, this is one of the largest publicly available word-level corpora for Tajik--Persian transliteration. Using this corpus, we train a character-level sequence-to-sequence Transformer model and evaluate it using Character Error Rate (CER) and exact-match accuracy. The Transformer achieves a CER of 0.3216 and an exact-match accuracy of 0.3133, outperforming both dictionary-based rule-based and recurrent neural baselines. With beam search (k=3), performance further improves to CER 0.3182 and accuracy 0.3215. We describe the data collection and preprocessing pipeline, model architecture, and experimental protocol, and report a part-of-speech analysis showing performance differences across lexical categories. All preprocessing scripts, deterministic splits into training, validation, and test sets, and training configurations are released to support reproducibility and further research on Tajik and related Persian dialects. The corpus supports research in character-level transliteration, cross-script NLP, and lexicographic applications.

  • 1 authors
·
May 8

Same Agent, Different Answers: A Repeat-Aware Audit of Corpus-Induced Answer Churn in Retrieval-Augmented QA

A retrieval-augmented QA system can return different answers after an index expansion even when its requested model identifier, prompt, retrieval policy, evidence depth, rendering, and exposed generation controls are held fixed. Aggregate accuracy may hide these changes when gains and losses cancel, while ordinary generation variability makes one-shot comparisons overstate update effects. We call the hidden phenomenon accuracy-blind answer churn and introduce the Snapshot Compatibility Audit, which estimates excess answer churn by subtracting same-snapshot repeat disagreement from cross-snapshot disagreement. We instantiate it by expanding one frozen FineWeb prefix from one to seven shards. In a preregistered 400-question Natural Questions study, normalized-exact and blinded-semantic excess churn are 6.44 and 10.25 percentage points while exact-match accuracy changes by only -1.50 points. A post-hoc analysis finds repeat-stable semantic flips on 40/400 questions. A separately preregistered 200-question TriviaQA study yields smaller, directionally consistent excess churn while exact-match accuracy moves in the opposite direction. An outcome-blind post-hoc 100-question subset replication with a second DeepSeek generator and serving configuration finds 8.75 pp of semantic excess churn even as exact match rises by 3.00 percentage points. Answer-level compatibility can therefore fail without a conspicuous or consistently directed utility shift. Retrieval-augmented releases should audit compatibility alongside utility.

A Few-Shot Semantic Parser for Wizard-of-Oz Dialogues with the Precise ThingTalk Representation

Previous attempts to build effective semantic parsers for Wizard-of-Oz (WOZ) conversations suffer from the difficulty in acquiring a high-quality, manually annotated training set. Approaches based only on dialogue synthesis are insufficient, as dialogues generated from state-machine based models are poor approximations of real-life conversations. Furthermore, previously proposed dialogue state representations are ambiguous and lack the precision necessary for building an effective agent. This paper proposes a new dialogue representation and a sample-efficient methodology that can predict precise dialogue states in WOZ conversations. We extended the ThingTalk representation to capture all information an agent needs to respond properly. Our training strategy is sample-efficient: we combine (1) fewshot data sparsely sampling the full dialogue space and (2) synthesized data covering a subset space of dialogues generated by a succinct state-based dialogue model. The completeness of the extended ThingTalk language is demonstrated with a fully operational agent, which is also used in training data synthesis. We demonstrate the effectiveness of our methodology on MultiWOZ 3.0, a reannotation of the MultiWOZ 2.1 dataset in ThingTalk. ThingTalk can represent 98% of the test turns, while the simulator can emulate 85% of the validation set. We train a contextual semantic parser using our strategy, and obtain 79% turn-by-turn exact match accuracy on the reannotated test set.

FlowTranslator: Training-Free In-Image Machine Translation with Flow-Based Editing

In-image machine translation (IIMT) replaces text in an image with its translation while preserving the surrounding visual context. Existing task-specific models achieve convincing performance but require massive paired training images before and after translation. As advanced text-to-image (T2I) models have reached a practically usable level of multilingual text generation, we argue that this capability can be transferred to IIMT and present FlowTranslator. It is a training-free IIMT framework that first employs an OCR model and an LLM to generate the translation prompt, which is injected into the T2I-based diffusion model. To optimize the accurate and natural generation of translated text, we introduce two trajectory controls: Region Coupling Release (RCR) partially decorrelates target-branch noise inside the text region early in the trajectory, while Coupling Expansion (CE) amplifies the emerging edit displacement mid-trajectory. Under the EasyOCR read-back protocol, FlowTranslator achieves average PRIM BLEU and COMET scores of 20.6 and 57.2, respectively, substantially outperforming the strong training-based baseline UniTranslator. On the more challenging and realistic whole-image ScenePair photographs translated into Chinese, it reaches 40.1\% exact-match accuracy and surpasses existing editing systems, some of which only address the text-rendering stage rather than the complete IIMT task. These results establish flow-based editing as a strong, fully training-free baseline for IIMT.

Efficient Online RFT with Plug-and-Play LLM Judges: Unlocking State-of-the-Art Performance

Reward-model training is the cost bottleneck in modern Reinforcement Learning Human Feedback (RLHF) pipelines, often requiring tens of billions of parameters and an offline preference-tuning phase. In the proposed method, a frozen, instruction-tuned 7B LLM is augmented with only a one line JSON rubric and a rank-16 LoRA adapter (affecting just 0.8% of the model's parameters), enabling it to serve as a complete substitute for the previously used heavyweight evaluation models. The plug-and-play judge achieves 96.2% accuracy on RewardBench, outperforming specialized reward networks ranging from 27B to 70B parameters. Additionally, it allows a 7B actor to outperform the top 70B DPO baseline, which scores 61.8%, by achieving 92% exact match accuracy on GSM-8K utilizing online PPO. Thorough ablations indicate that (i) six in context demonstrations deliver the majority of the zero-to-few-shot improvements (+2pp), and (ii) the LoRA effectively addresses the remaining disparity, particularly in the safety and adversarial Chat-Hard segments. The proposed model introduces HH-Rationales, a subset of 10,000 pairs from Anthropic HH-RLHF, to examine interpretability, accompanied by human generated justifications. GPT-4 scoring indicates that our LoRA judge attains approximately = 9/10 in similarity to human explanations, while zero-shot judges score around =5/10. These results indicate that the combination of prompt engineering and tiny LoRA produces a cost effective, transparent, and easily adjustable reward function, removing the offline phase while achieving new state-of-the-art outcomes for both static evaluation and online RLHF.

  • 2 authors
·
Jun 6, 2025

LogSieve: Task-Aware CI Log Reduction for Sustainable LLM-Based Analysis

Logs are essential for understanding Continuous Integration (CI) behavior, particularly for diagnosing build failures and performance regressions. Yet their growing volume and verbosity make both manual inspection and automated analysis increasingly costly, time-consuming, and environmentally costly. While prior work has explored log compression, anomaly detection, and LLM-based log analysis, most efforts target structured system logs rather than the unstructured, noisy, and verbose logs typical of CI workflows. We present LogSieve, a lightweight, RCA-aware and semantics-preserving log reduction technique that filters low-information lines while retaining content relevant to downstream reasoning. Evaluated on CI logs from 20 open-source Android projects using GitHub Actions, LogSieve achieves an average 42% reduction in lines and 40% reduction in tokens with minimal semantic loss. This pre-inference reduction lowers computational cost and can proportionally reduce energy use (and associated emissions) by decreasing the volume of data processed during LLM inference. Compared with structure-first baselines (LogZip and random-line removal), LogSieve preserves much higher semantic and categorical fidelity (Cosine = 0.93, GPTScore = 0.93, 80% exact-match accuracy). Embedding-based classifiers automate relevance detection with near-human accuracy (97%), enabling scalable and sustainable integration of semantics-aware filtering into CI workflows. LogSieve thus bridges log management and LLM reasoning, offering a practical path toward greener and more interpretable CI automation.

  • 3 authors
·
Jan 27

EvoSkill: Automated Skill Discovery for Multi-Agent Systems

Coding agents are increasingly used as general-purpose problem solvers, but their flexibility does not by itself confer the domain expertise needed for specialized tasks. Recent work addresses this through agent skills: reusable workflows, and code, that augment agents with domain-specific capabilities. Most skills today are hand-crafted, and existing evolutionary approaches optimize low-level artifacts (e.g. prompts \& code) that are tightly coupled to specific models and tasks. We introduce EvoSkill, a self-evolving framework that automatically discovers and refines agent skills through iterative failure analysis. EvoSkill analyzes execution failures, proposes new skills or edits to existing ones, and materializes them into structured, reusable skill folders. A Pareto frontier of agent programs governs selection, retaining only skills that improve held-out validation performance while the underlying model remains frozen. We evaluate EvoSkill on two benchmarks: OfficeQA, a grounded reasoning benchmark over U.S.\ Treasury data, where it improves exact-match accuracy by 7.3\% (60.6\% to 67.9\%); and SealQA, a search-augmented QA benchmark with noisy retrieval, where it yields a 12.1\% gain (26.6\% to 38.7\%). We also investigate the zero-shot transfer capabilties of skills evolved on one task to the other; in particular: skills evolved from SealQA transfers zero-shot to BrowseComp, improving accuracy by 5.3\% without modification demonstrating that skill-level optimization produces transferable capabilities beyond the training task.

  • 5 authors
·
Mar 3

MS-GPT: Rethinking MS/MS De Novo Structure Elucidation as Spectrum-Induced Posterior Querying of a Molecule-Language Model

Molecular structure elucidation from tandem mass spectra (MS/MS) is a central inverse problem in analytical chemistry. Most existing approaches to MS/MS identification remain tied to reference libraries or predefined candidate sets, whereas de novo methods aim to generate structures directly from spectra. A common de novo route predicts a molecular fingerprint from the spectrum and then decodes structures from it, enabling decoder pretraining on large molecule-only corpora. However, this paradigm creates a training-inference mismatch: the decoder is trained on oracle fingerprints computed from molecules, but at inference it is queried with a noisy spectrum-induced fingerprint posterior that is typically collapsed to a single thresholded fingerprint. We introduce MS-GPT, which recasts fingerprint-mediated de novo elucidation as spectrum-induced posterior querying of a conditional molecule-language model. MS-GPT conditions a molecule-language model on fingerprints and formulas, then converts the spectrum-induced posterior into a band of fingerprint queries near the oracle-fingerprint manifold through active-bit density calibration. Candidates sampled across this band are pooled and ranked by generation-frequency consensus. A lightweight LoRA adapter further mitigates domain-specific posterior bias while preserving the pretrained molecular prior. On NPLIB1 and MassSpecGym, MS-GPT sets a new state of the art, reaching Top-1/Top-10 exact-match accuracy of 29.8\%/41.1\% and 23.9\%/28.7\%, respectively. Candidate-pool scaling shows that efficient autoregressive molecular generation continues to improve recall with a little additional inference cost. The source code and model checkpoints are available at https://github.com/VIKI623/MS-GPT.

  • 8 authors
·
Jul 25

MinerU.Chem: A High-Precision System for Optical Chemical Structure and Reaction Recognition

In organic chemistry papers and patents, molecular structures, reaction schemes, and experimental conditions are often presented as molecular structure depictions, reaction diagrams, and complex tables or figures. Such information is difficult for general-purpose document parsing systems to directly convert into machine-readable data. This limits data production for organic chemistry knowledge base construction and for AI for Chemistry tasks such as reaction prediction, retrosynthesis, condition recommendation, molecular property prediction, and drug molecule design. This report introduces MinerU-Chem, a document parsing system for organic chemistry literature integrated into the MinerU online platform. Built on top of MinerU's general document parsing pipeline, MinerU-Chem adds five chemistry-specific modules: chemistry relevance filtering, molecular structure detection, molecule identifier extraction, molecular structure recognition, and reaction scheme parsing. Together, these modules convert organic-chemistry-related image regions in documents into a Molecule Summary List and a Reaction Summary List. For molecular structure recognition, MinerU-Chem uses CARBON (Complex Atomic Representation and Bonding Object Notation) as its core representation. CARBON enables recognition results to preserve both the visual layout of the original image and complex chemical semantics, while supporting the export of standard downstream formats such as MolFile and SMILES. On the SMILES-evaluable subset of MolRecBench-Wild (N=2,392), MinerU-Chem's molecular structure recognition module achieves a SMILES exact-match accuracy of 93.02%, outperforming the best evaluated comparison system, GPT-5.6-Sol (74.87%), by 18.15 percentage points. The system has been integrated into the MinerU online platform and is available at https://mineru.net/OpenSourceTools/Extractor .

  • 45 authors
·
Aug 4

See, Think, Act: Online Shopper Behavior Simulation with VLM Agents

LLMs have recently demonstrated strong potential in simulating online shopper behavior. Prior work has improved action prediction by applying SFT on action traces with LLM-generated rationales, and by leveraging RL to further enhance reasoning capabilities. Despite these advances, current approaches rely on text-based inputs and overlook the essential role of visual perception in shaping human decision-making during web GUI interactions. In this paper, we investigate the integration of visual information, specifically webpage screenshots, into behavior simulation via VLMs, leveraging OPeRA dataset. By grounding agent decision-making in both textual and visual modalities, we aim to narrow the gap between synthetic agents and real-world users, thereby enabling more cognitively aligned simulations of online shopping behavior. Specifically, we employ SFT for joint action prediction and rationale generation, conditioning on the full interaction context, which comprises action history, past HTML observations, and the current webpage screenshot. To further enhance reasoning capabilities, we integrate RL with a hierarchical reward structure, scaled by a difficulty-aware factor that prioritizes challenging decision points. Empirically, our studies show that incorporating visual grounding yields substantial gains: the combination of text and image inputs improves exact match accuracy by more than 6% over text-only inputs. These results indicate that multi-modal grounding not only boosts predictive accuracy but also enhances simulation fidelity in visually complex environments, which captures nuances of human attention and decision-making that text-only agents often miss. Finally, we revisit the design space of behavior simulation frameworks, identify key methodological limitations, and propose future research directions toward building efficient and effective human behavior simulators.

  • 13 authors
·
Oct 21, 2025

Efficient Multi-Task Inferencing: Model Merging with Gromov-Wasserstein Feature Alignment

Automatic scoring of student responses enhances efficiency in education, but deploying a separate neural network for each task increases storage demands, maintenance efforts, and redundant computations. To address these challenges, this paper introduces the Gromov-Wasserstein Scoring Model Merging (GW-SMM) method, which merges models based on feature distribution similarities measured via the Gromov-Wasserstein distance. Our approach begins by extracting features from student responses using individual models, capturing both item-specific context and unique learned representations. The Gromov-Wasserstein distance then quantifies the similarity between these feature distributions, identifying the most compatible models for merging. Models exhibiting the smallest pairwise distances, typically in pairs or trios, are merged by combining only the shared layers preceding the classification head. This strategy results in a unified feature extractor while preserving separate classification heads for item-specific scoring. We validated our approach against human expert knowledge and a GPT-o1-based merging method. GW-SMM consistently outperformed both, achieving a higher micro F1 score, macro F1 score, exact match accuracy, and per-label accuracy. The improvements in micro F1 and per-label accuracy were statistically significant compared to GPT-o1-based merging (p=0.04, p=0.01). Additionally, GW-SMM reduced storage requirements by half without compromising much accuracy, demonstrating its computational efficiency alongside reliable scoring performance.

  • 6 authors
·
Mar 11, 2025

PURPLE: Making a Large Language Model a Better SQL Writer

Large Language Model (LLM) techniques play an increasingly important role in Natural Language to SQL (NL2SQL) translation. LLMs trained by extensive corpora have strong natural language understanding and basic SQL generation abilities without additional tuning specific to NL2SQL tasks. Existing LLMs-based NL2SQL approaches try to improve the translation by enhancing the LLMs with an emphasis on user intention understanding. However, LLMs sometimes fail to generate appropriate SQL due to their lack of knowledge in organizing complex logical operator composition. A promising method is to input the LLMs with demonstrations, which include known NL2SQL translations from various databases. LLMs can learn to organize operator compositions from the input demonstrations for the given task. In this paper, we propose PURPLE (Pre-trained models Utilized to Retrieve Prompts for Logical Enhancement), which improves accuracy by retrieving demonstrations containing the requisite logical operator composition for the NL2SQL task on hand, thereby guiding LLMs to produce better SQL translation. PURPLE achieves a new state-of-the-art performance of 80.5% exact-set match accuracy and 87.8% execution match accuracy on the validation set of the popular NL2SQL benchmark Spider. PURPLE maintains high accuracy across diverse benchmarks, budgetary constraints, and various LLMs, showing robustness and cost-effectiveness.

  • 10 authors
·
Mar 29, 2024

Graphix-T5: Mixing Pre-Trained Transformers with Graph-Aware Layers for Text-to-SQL Parsing

The task of text-to-SQL parsing, which aims at converting natural language questions into executable SQL queries, has garnered increasing attention in recent years, as it can assist end users in efficiently extracting vital information from databases without the need for technical background. One of the major challenges in text-to-SQL parsing is domain generalization, i.e., how to generalize well to unseen databases. Recently, the pre-trained text-to-text transformer model, namely T5, though not specialized for text-to-SQL parsing, has achieved state-of-the-art performance on standard benchmarks targeting domain generalization. In this work, we explore ways to further augment the pre-trained T5 model with specialized components for text-to-SQL parsing. Such components are expected to introduce structural inductive bias into text-to-SQL parsers thus improving model's capacity on (potentially multi-hop) reasoning, which is critical for generating structure-rich SQLs. To this end, we propose a new architecture GRAPHIX-T5, a mixed model with the standard pre-trained transformer model augmented by some specially-designed graph-aware layers. Extensive experiments and analysis demonstrate the effectiveness of GRAPHIX-T5 across four text-to-SQL benchmarks: SPIDER, SYN, REALISTIC and DK. GRAPHIX-T5 surpass all other T5-based parsers with a significant margin, achieving new state-of-the-art performance. Notably, GRAPHIX-T5-large reach performance superior to the original T5-large by 5.7% on exact match (EM) accuracy and 6.6% on execution accuracy (EX). This even outperforms the T5-3B by 1.2% on EM and 1.5% on EX.

  • 10 authors
·
Jan 18, 2023

LLMHoney: A Real-Time SSH Honeypot with Large Language Model-Driven Dynamic Response Generation

Cybersecurity honeypots are deception tools for engaging attackers and gather intelligence, but traditional low or medium-interaction honeypots often rely on static, pre-scripted interactions that can be easily identified by skilled adversaries. This Report presents LLMHoney, an SSH honeypot that leverages Large Language Models (LLMs) to generate realistic, dynamic command outputs in real time. LLMHoney integrates a dictionary-based virtual file system to handle common commands with low latency while using LLMs for novel inputs, achieving a balance between authenticity and performance. We implemented LLMHoney using open-source LLMs and evaluated it on a testbed with 138 representative Linux commands. We report comprehensive metrics including accuracy (exact-match, Cosine Similarity, Jaro-Winkler Similarity, Levenshtein Similarity and BLEU score), response latency and memory overhead. We evaluate LLMHoney using multiple LLM backends ranging from 0.36B to 3.8B parameters, including both open-source models and a proprietary model(Gemini). Our experiments compare 13 different LLM variants; results show that Gemini-2.0 and moderately-sized models Qwen2.5:1.5B and Phi3:3.8B provide the most reliable and accurate responses, with mean latencies around 3 seconds, whereas smaller models often produce incorrect or out-of-character outputs. We also discuss how LLM integration improves honeypot realism and adaptability compared to traditional honeypots, as well as challenges such as occasional hallucinated outputs and increased resource usage. Our findings demonstrate that LLM-driven honeypots are a promising approach to enhance attacker engagement and collect richer threat intelligence.

  • 1 authors
·
Sep 1, 2025

Enhancing Knowledge Retrieval with In-Context Learning and Semantic Search through Generative AI

Retrieving and extracting knowledge from extensive research documents and large databases presents significant challenges for researchers, students, and professionals in today's information-rich era. Existing retrieval systems, which rely on general-purpose Large Language Models (LLMs), often fail to provide accurate responses to domain-specific inquiries. Additionally, the high cost of pretraining or fine-tuning LLMs for specific domains limits their widespread adoption. To address these limitations, we propose a novel methodology that combines the generative capabilities of LLMs with the fast and accurate retrieval capabilities of vector databases. This advanced retrieval system can efficiently handle both tabular and non-tabular data, understand natural language user queries, and retrieve relevant information without fine-tuning. The developed model, Generative Text Retrieval (GTR), is adaptable to both unstructured and structured data with minor refinement. GTR was evaluated on both manually annotated and public datasets, achieving over 90% accuracy and delivering truthful outputs in 87% of cases. Our model achieved state-of-the-art performance with a Rouge-L F1 score of 0.98 on the MSMARCO dataset. The refined model, Generative Tabular Text Retrieval (GTR-T), demonstrated its efficiency in large database querying, achieving an Execution Accuracy (EX) of 0.82 and an Exact-Set-Match (EM) accuracy of 0.60 on the Spider dataset, using an open-source LLM. These efforts leverage Generative AI and In-Context Learning to enhance human-text interaction and make advanced AI capabilities more accessible. By integrating robust retrieval systems with powerful LLMs, our approach aims to democratize access to sophisticated AI tools, improving the efficiency, accuracy, and scalability of AI-driven information retrieval and database querying.

  • 4 authors
·
Jun 13, 2024

TMIQ: Quantifying Test and Measurement Domain Intelligence in Large Language Models

The Test and Measurement domain, known for its strict requirements for accuracy and efficiency, is increasingly adopting Generative AI technologies to enhance the performance of data analysis, automation, and decision-making processes. Among these, Large Language Models (LLMs) show significant promise for advancing automation and precision in testing. However, the evaluation of LLMs in this specialized area remains insufficiently explored. To address this gap, we introduce the Test and Measurement Intelligence Quotient (TMIQ), a benchmark designed to quantitatively assess LLMs across a wide range of electronic engineering tasks. TMIQ offers a comprehensive set of scenarios and metrics for detailed evaluation, including SCPI command matching accuracy, ranked response evaluation, Chain-of-Thought Reasoning (CoT), and the impact of output formatting variations required by LLMs on performance. In testing various LLMs, our findings indicate varying levels of proficiency, with exact SCPI command match accuracy ranging from around 56% to 73%, and ranked matching first-position scores achieving around 33% for the best-performing model. We also assess token usage, cost-efficiency, and response times, identifying trade-offs between accuracy and operational efficiency. Additionally, we present a command-line interface (CLI) tool that enables users to generate datasets using the same methodology, allowing for tailored assessments of LLMs. TMIQ and the CLI tool provide a rigorous, reproducible means of evaluating LLMs for production environments, facilitating continuous monitoring and identifying strengths and areas for improvement, and driving innovation in their selections for applications within the Test and Measurement industry.

  • 2 authors
·
Mar 3, 2025

Query Carefully: Detecting the Unanswerables in Text-to-SQL Tasks

Text-to-SQL systems allow non-SQL experts to interact with relational databases using natural language. However, their tendency to generate executable SQL for ambiguous, out-of-scope, or unanswerable queries introduces a hidden risk, as outputs may be misinterpreted as correct. This risk is especially serious in biomedical contexts, where precision is critical. We therefore present Query Carefully, a pipeline that integrates LLM-based SQL generation with explicit detection and handling of unanswerable inputs. Building on the OncoMX component of ScienceBenchmark, we construct OncoMX-NAQ (No-Answer Questions), a set of 80 no-answer questions spanning 8 categories (non-SQL, out-of-schema/domain, and multiple ambiguity types). Our approach employs llama3.3:70b with schema-aware prompts, explicit No-Answer Rules (NAR), and few-shot examples drawn from both answerable and unanswerable questions. We evaluate SQL exact match, result accuracy, and unanswerable-detection accuracy. On the OncoMX dev split, few-shot prompting with answerable examples increases result accuracy, and adding unanswerable examples does not degrade performance. On OncoMX-NAQ, balanced prompting achieves the highest unanswerable-detection accuracy (0.8), with near-perfect results for structurally defined categories (non-SQL, missing columns, out-of-domain) but persistent challenges for missing-value queries (0.5) and column ambiguity (0.3). A lightweight user interface surfaces interim SQL, execution results, and abstentions, supporting transparent and reliable text-to-SQL in biomedical applications.

  • 5 authors
·
Dec 19, 2025

FIRESPARQL: A LLM-based Framework for SPARQL Query Generation over Scholarly Knowledge Graphs

Question answering over Scholarly Knowledge Graphs (SKGs) remains a challenging task due to the complexity of scholarly content and the intricate structure of these graphs. Large Language Model (LLM) approaches could be used to translate natural language questions (NLQs) into SPARQL queries; however, these LLM-based approaches struggle with SPARQL query generation due to limited exposure to SKG-specific content and the underlying schema. We identified two main types of errors in the LLM-generated SPARQL queries: (i) structural inconsistencies, such as missing or redundant triples in the queries, and (ii) semantic inaccuracies, where incorrect entities or properties are shown in the queries despite a correct query structure. To address these issues, we propose FIRESPARQL, a modular framework that supports fine-tuned LLMs as a core component, with optional context provided via retrieval-augmented generation (RAG) and a SPARQL query correction layer. We evaluate the framework on the SciQA Benchmark using various configurations (zero-shot, zero-shot with RAG, one-shot, fine-tuning, and fine-tuning with RAG) and compare the performance with baseline and state-of-the-art approaches. We measure query accuracy using BLEU and ROUGE metrics, and query result accuracy using relaxed exact match(RelaxedEM), with respect to the gold standards containing the NLQs, SPARQL queries, and the results of the queries. Experimental results demonstrate that fine-tuning achieves the highest overall performance, reaching 0.90 ROUGE-L for query accuracy and 0.85 RelaxedEM for result accuracy on the test set.

  • 3 authors
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Aug 14, 2025 1

LATTE: Improving Latex Recognition for Tables and Formulae with Iterative Refinement

Portable Document Format (PDF) files are dominantly used for storing and disseminating scientific research, legal documents, and tax information. LaTeX is a popular application for creating PDF documents. Despite its advantages, LaTeX is not WYSWYG -- what you see is what you get, i.e., the LaTeX source and rendered PDF images look drastically different, especially for formulae and tables. This gap makes it hard to modify or export LaTeX sources for formulae and tables from PDF images, and existing work is still limited. First, prior work generates LaTeX sources in a single iteration and struggles with complex LaTeX formulae. Second, existing work mainly recognizes and extracts LaTeX sources for formulae; and is incapable or ineffective for tables. This paper proposes LATTE, the first iterative refinement framework for LaTeX recognition. Specifically, we propose delta-view as feedback, which compares and pinpoints the differences between a pair of rendered images of the extracted LaTeX source and the expected correct image. Such delta-view feedback enables our fault localization model to localize the faulty parts of the incorrect recognition more accurately and enables our LaTeX refinement model to repair the incorrect extraction more accurately. LATTE improves the LaTeX source extraction accuracy of both LaTeX formulae and tables, outperforming existing techniques as well as GPT-4V by at least 7.07% of exact match, with a success refinement rate of 46.08% (formula) and 25.51% (table).

  • 5 authors
·
Sep 21, 2024

RuleRAG: Rule-guided retrieval-augmented generation with language models for question answering

Retrieval-augmented generation (RAG) framework has shown promising potential in knowledge-intensive question answering (QA) by retrieving external corpus and generating based on augmented context. However, existing approaches only consider the query itself, neither specifying the retrieval preferences for the retrievers nor informing the generators of how to refer to the retrieved documents for the answers, which poses a significant challenge to the QA performance. To address these issues, we propose Rule-Guided Retrieval-Augmented Generation with LMs, which explicitly introduces symbolic rules as demonstrations for in-context learning (RuleRAG-ICL) to guide retrievers to retrieve logically related documents in the directions of rules and uniformly guide generators to generate answers attributed by the guidance of the same set of rules. Moreover, the combination of queries and rules can be further used as supervised fine-tuning data to update retrievers and generators (RuleRAG-FT) to achieve better rule-based instruction following capability, leading to retrieve more supportive results and generate more acceptable answers. To emphasize the attribution of rules, we construct five rule-aware QA benchmarks, including three temporal and two static scenarios, and equip RuleRAG with several kinds of retrievers and generators. Experiments demonstrate that training-free RuleRAG-ICL effectively improves the retrieval quality of +89.2% in Recall@10 scores and generation accuracy of +103.1% in exact match scores over standard RAG on average across the five benchmarks, and further fine-tuned RuleRAG-FT consistently yields more significant performance enhancement. Extensive analyses indicate that RuleRAG scales well with increasing numbers of retrieved documents and exhibits generalization ability for untrained rules.

  • 6 authors
·
Oct 15, 2024

SeqPE: Transformer with Sequential Position Encoding

Since self-attention layers in Transformers are permutation invariant by design, positional encodings must be explicitly incorporated to enable spatial understanding. However, fixed-size lookup tables used in traditional learnable position embeddings (PEs) limit extrapolation capabilities beyond pre-trained sequence lengths. Expert-designed methods such as ALiBi and RoPE, mitigate this limitation but demand extensive modifications for adapting to new modalities, underscoring fundamental challenges in adaptability and scalability. In this work, we present SeqPE, a unified and fully learnable position encoding framework that represents each n-dimensional position index as a symbolic sequence and employs a lightweight sequential position encoder to learn their embeddings in an end-to-end manner. To regularize SeqPE's embedding space, we introduce two complementary objectives: a contrastive objective that aligns embedding distances with a predefined position-distance function, and a knowledge distillation loss that anchors out-of-distribution position embeddings to in-distribution teacher representations, further enhancing extrapolation performance. Experiments across language modeling, long-context question answering, and 2D image classification demonstrate that SeqPE not only surpasses strong baselines in perplexity, exact match (EM), and accuracy--particularly under context length extrapolation--but also enables seamless generalization to multi-dimensional inputs without requiring manual architectural redesign. We release our code, data, and checkpoints at https://github.com/ghrua/seqpe.

  • 8 authors
·
Jun 16, 2025 2

CoEdPilot: Recommending Code Edits with Learned Prior Edit Relevance, Project-wise Awareness, and Interactive Nature

Recent years have seen the development of LLM-based code generation. Compared to generating code in a software project, incremental code edits are empirically observed to be more frequent. The emerging code editing approaches usually formulate the problem as generating an edit based on known relevant prior edits and context. However, practical code edits can be more complicated. First, an editing session can include multiple (ir)relevant edits to the code under edit. Second, the inference of the subsequent edits is non-trivial as the scope of its ripple effect can be the whole project. In this work, we propose CoEdPilot, an LLM-driven solution to recommend code edits by discriminating the relevant edits, exploring their interactive natures, and estimating its ripple effect in the project. Specifically, CoEdPilot orchestrates multiple neural transformers to identify what and how to edit in the project regarding both edit location and edit content. When a user accomplishes an edit with an optional editing description, a Subsequent Edit Analysis first reports the most relevant files in the project with what types of edits (e.g., keep, insert, and replace) can happen for each line of their code. Next, an Edit-content Generator generates concrete edit options for the lines of code, regarding its relevant prior changes reported by an Edit-dependency Analyzer. Lastly, both the Subsequent Edit Analysis and the Edit-content Generator capture relevant prior edits as feedback to readjust their recommendations. We train our models by collecting over 180K commits from 471 open-source projects in 5 programming languages. Our extensive experiments show that CoEdPilot can well predict the edits (i.e., predicting edit location with an accuracy of 70.8%-85.3%, and the edit content with an exact match rate of 41.8% and BLEU4 score of 60.7)...

  • 9 authors
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Aug 2, 2024

Inadvertent Context Leakage in Language Models

For AI agents to be useful beyond simple chat, they must hold sensitive user context such as calendars, credentials, health records, and financial data. We study whether the mere presence of such secrets in a model's context window introduces hidden correlations into the model's benign outputs, allowing reconstruction even when the model correctly refuses direct extraction. We further study whether an adversary can actively engineer prompts that amplify this effect, using the model as a covert carrier to transmit secrets through seemingly innocuous text. In both cases, this limited leakage is exploited using a novel adaptive attack that assumes black-box access to the underlying model. In controlled experiments across eight proprietary models, we find that 2-digit in-context secrets are reconstructed with near-perfect accuracy and 4-digit secrets at 82\% exact match, all from outputs the model produces in response to ordinary, non-adversarial requests. We observe that more capable models leak more: stronger instruction-following amplifies sensitivity to in-context secrets, suggesting leakage is a byproduct of capability as opposed to a patchable bug. We show this leakage enables two practical attacks: (1) a trained classifier that infers semantic predicates about user memories (e.g., health conditions, financial events) from routine natural-language outputs, and (2) an RL-trained adversary that extracts full Social Security Numbers from a production-style agent.

  • 5 authors
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Aug 19

The Structured Output Benchmark: A Multi-Source Benchmark for Evaluating Structured Output Quality in Large Language Models

Large Language Models are increasingly being deployed to extract structured data from unstructured and semi-structured sources: parsing invoices, medical records, and converting PDF documents to database entries. Yet existing benchmarks for structured output generation either focus on schema compliance alone, or evaluate value correctness within a single source domain. We introduce SOB (The Structured Output Benchmark), a multi-source benchmark spanning three source modalities: native text, images, and audio conversations. All models receive a text-normalized representation of their context regardless of source modality; this deliberate design isolates structured-output capability from raw vision or speech-processing quality, ensuring a fair, source-agnostic comparison. Our benchmark comprises 5,000 text evaluation records derived from multi-hop QA drawn from a 25,091-record full corpus, 209 image records from OCR-processed PDFs across seven document types including multi-column layouts, dense tables, scanned historical documents, small-print text, and mathematical typesetting, and 115 audio records from the AMI corpus. Each record pairs a natural-language question with a JSON schema that the model must follow and a ground-truth answer verified against the source context. We evaluate 21 frontier and open-weight models across three source domains and seven metrics. Our results reveal a consistent pattern: models achieve near-perfect schema compliance, yet the best Value Accuracy, measured by exact leaf-value match, reaches only 83.0% on text, 67.2% on images, and 23.7% on audio, where longer context makes extraction substantially harder. We release the dataset, evaluation pipeline, and all related code.

  • 4 authors
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Apr 27

Benchmarking and Improving Text-to-SQL Generation under Ambiguity

Research in Text-to-SQL conversion has been largely benchmarked against datasets where each text query corresponds to one correct SQL. However, natural language queries over real-life databases frequently involve significant ambiguity about the intended SQL due to overlapping schema names and multiple confusing relationship paths. To bridge this gap, we develop a novel benchmark called AmbiQT with over 3000 examples where each text is interpretable as two plausible SQLs due to lexical and/or structural ambiguity. When faced with ambiguity, an ideal top-k decoder should generate all valid interpretations for possible disambiguation by the user. We evaluate several Text-to-SQL systems and decoding algorithms, including those employing state-of-the-art LLMs, and find them to be far from this ideal. The primary reason is that the prevalent beam search algorithm and its variants, treat SQL queries as a string and produce unhelpful token-level diversity in the top-k. We propose LogicalBeam, a new decoding algorithm that navigates the SQL logic space using a blend of plan-based template generation and constrained infilling. Counterfactually generated plans diversify templates while in-filling with a beam-search that branches solely on schema names provides value diversity. LogicalBeam is up to 2.5 times more effective than state-of-the-art models at generating all candidate SQLs in the top-k ranked outputs. It also enhances the top-5 Exact and Execution Match Accuracies on SPIDER and Kaggle DBQA.

  • 4 authors
·
Oct 20, 2023

Prompt-Based Clarity Evaluation and Topic Detection in Political Question Answering

Automatic evaluation of large language model (LLM) responses requires not only factual correctness but also clarity, particularly in political question-answering. While recent datasets provide human annotations for clarity and evasion, the impact of prompt design on automatic clarity evaluation remains underexplored. In this paper, we study prompt-based clarity evaluation using the CLARITY dataset from the SemEval 2026 shared task. We compare a GPT-3.5 baseline provided with the dataset against GPT-5.2 evaluated under three prompting strategies: simple prompting, chain-of-thought prompting, and chain-of-thought with few-shot examples. Model predictions are evaluated against human annotations using accuracy and class-wise metrics for clarity and evasion, along with hierarchical exact match. Results show that GPT-5.2 consistently outperforms the GPT-3.5 baseline on clarity prediction, with accuracy improving from 56 percent to 63 percent under chain-of-thought with few-shot prompting. Chain-of-thought prompting yields the highest evasion accuracy at 34 percent, though improvements are less stable across fine-grained evasion categories. We further evaluate topic identification and find that reasoning-based prompting improves accuracy from 60 percent to 74 percent relative to human annotations. Overall, our findings indicate that prompt design reliably improves high-level clarity evaluation, while fine-grained evasion and topic detection remain challenging despite structured reasoning prompts.

  • 4 authors
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Jan 12

Infini-gram mini: Exact n-gram Search at the Internet Scale with FM-Index

Language models are trained mainly on massive text data from the Internet, and it becomes increasingly important to understand this data source. Exact-match search engines enable searching in large text corpora -- counting string appearances and retrieving the enclosing documents -- yet the high storage overhead hinders their application on Internet-scale data. We present Infini-gram mini, an efficient and scalable system that can make petabyte-level text corpora searchable. Based on the FM-index data structure (Ferragina and Manzini, 2000), which simultaneously indexes and compresses text, our system creates indexes with size only 44% of the corpus. Infini-gram mini greatly improves upon the best existing implementation of FM-index in terms of indexing speed (18times) and memory use during both indexing (3.2times reduction) and querying (down to a negligible amount). We index 46TB of Internet text in 50 days with a single 128-core CPU node (or 19 hours if using 75 such nodes). We show one important use case of Infini-gram mini in a large-scale analysis of benchmark contamination. We find several core LM evaluation benchmarks to be heavily contaminated in Internet crawls (up to 40% in SQuAD), which could lead to overestimating the capabilities of language models if trained on such data. We host a benchmark contamination bulletin to share the contamination rate of many core and community-contributed benchmarks. We also release a web interface and an API endpoint to serve general search queries on Infini-gram mini indexes.

  • 5 authors
·
Jun 13, 2025 3

D2S-FLOW: Automated Parameter Extraction from Datasheets for SPICE Model Generation Using Large Language Models

In electronic design, engineers often manually search through extensive documents to retrieve component parameters required for constructing SPICE models, a process that is both labor-intensive and time-consuming. To address this challenge, we present an automated framework called D2S-FLOW that leverages large language models (LLMs) to extract electrical parameters from datasheets and generate SPICE models with high precision and efficiency, significantly reducing the need for manual intervention. Unlike traditional RAG systems, D2S-FLOW employs a workflow to enhance precision in handling unstructured documents and inconsistent naming conventions through three innovative mechanisms: Attention-Guided Document Focusing (AGDF), Hierarchical Document-Enhanced Retrieval (HDER), and Heterogeneous Named Entity Normalization (HNEN). AGDF narrows retrieval to user-selected documents, HDER utilizes document structure for precise parameter localization, and HNEN standardizes terminology via semantic inference. Experimental results demonstrate that the framework achieves an Exact Match (EM) of 0.86, an F1 score of 0.92, and an Exact Correctness (EC) of 0.96, outperforming the strongest baseline by 19.4%, 5.7%, and 13.1%, respectively. Additionally, it reduces API token consumption by 38% and minimizes the irrelevant information ratio to 4%, showcasing substantial improvements in resource efficiency. This research provides an effective automated solution for circuit design.

  • 3 authors
·
Feb 23, 2025

A Frozen 12B Beats Frontier Models on Verified Work: 100% Accuracy, 0 Tokens, Bit-Exact, Forever

Improving a language model today means retraining it: enormous compute, a new opaque model each cycle, non-deterministic output. We take the opposite path: the model stays frozen, and a persistent memory of verified solutions grows beside it. Once a problem family is solved and has passed an independent verification step that never consults the answer key, every new instance of that family is answered at zero generation tokens, bit-exact, deterministically. Across 180 fresh instances spanning nine problem families, four architectures from four vendors - dense and mixture-of-experts - each score 180/180 at zero generation tokens per answer: execution-bound capability decoupled from parameter scaling. A negative control attributes the capability fully to the memory: emptied, it solves nothing. The same verify-before-store contract holds for open-ended reasoning: 88/88 consistency-gated acceptances across all four models, machine-checked formal proof, and reasoning-method transfer at 77/80. Memory selection takes 1.4 microseconds; a full reuse completes in 6-23 ms at 36 mWh. Approximate similarity retrieval selects the wrong item 94.3% of the time on a 4,500-item verified store where exact addressing makes zero errors. The store also serves as working context at a scale no shipped engine matches: a 6,000,000-token movable window on a single 46 GB GPU at flat memory, where vLLM stops at 30,399 tokens and SGLang silently truncates past 32,000. On published benchmarks, frontier models remain far ahead of any 12B at raw from-scratch reasoning; on everything this system has solved and verified, the comparison inverts: a frontier API call pays a fresh generation pass on every query, forever, while verified reuse costs zero tokens and returns the identical bits every time. A public testbench with free, rate-limited access accompanies this report: https://corbenic-galahad-bench.hf.space

Corbenci Corbenic
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Jul 25 4

PageRecall: Measuring Page Selection in Literature-Grounded Question Answering

We describe our system for LitTraceQA (GroundLM @ EMNLP 2026): given a research question, retrieve the relevant papers from a pool of 27,487, cite the page and the table or figure where the answer lives, and answer in a requested format. Our main finding is that evidence grounding is limited by retrieval, not by reading. The page selector put the annotator's page, which we call the gold page, in front of the model that locates evidence only about half the time (52.6% gold-page recall), while that model, given the page, cited the right one in 45 of the 48 locators it emitted (94%). When the page was missing it rarely said so: of 45 such cases it returned nothing 14 times, a wrong page 24 times, and a correct page 7 times, so the pipeline failed quietly almost twice as often as it failed visibly. Since the failure was that the right page was never shown, the fix is to stop choosing: each retrieved paper fits in the model's context, so we show it whole. Page ranking survives only as a fallback inside papers too long to fit, which no test-split paper was, and gold-page recall reaches 100% on the papers we can parse. Separately, questions that identify their target by position rather than content, such as "the first author of the 24th reference", are served by parsing rather than retrieval: we resolve the bibliography into an addressable list, which also supplies identifiers the evidence metric scores. The final system scores 0.762 paper F_1, 0.441 evidence F_1 and 0.920 multiple-choice accuracy on the held-out test split. Because the pipeline depends on a closed model without seed control, we release a harness that verifies the paper's central claims against committed artifacts.

  • 1 authors
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Sep 15

Evaluating Correctness and Faithfulness of Instruction-Following Models for Question Answering

Retriever-augmented instruction-following models are attractive alternatives to fine-tuned approaches for information-seeking tasks such as question answering (QA). By simply prepending retrieved documents in its input along with an instruction, these models can be adapted to various information domains and tasks without additional fine-tuning. While the model responses tend to be natural and fluent, the additional verbosity makes traditional QA evaluation metrics such as exact match (EM) and F1 unreliable for accurately quantifying model performance. In this work, we investigate the performance of instruction-following models across three information-seeking QA tasks. We use both automatic and human evaluation to evaluate these models along two dimensions: 1) how well they satisfy the user's information need (correctness), and 2) whether they produce a response based on the provided knowledge (faithfulness). Guided by human evaluation and analysis, we highlight the shortcomings of traditional metrics for both correctness and faithfulness. We then propose simple token-overlap based and model-based metrics that reflect the true performance of these models. Our analysis reveals that instruction-following models are competitive, and sometimes even outperform fine-tuned models for correctness. However, these models struggle to stick to the provided knowledge and often hallucinate in their responses. We hope our work encourages a more holistic evaluation of instruction-following models for QA. Our code and data is available at https://github.com/McGill-NLP/instruct-qa

  • 5 authors
·
Jul 31, 2023

OTAP: Structure-Aware Optimal Transport for Evaluating Planning and Execution in Agent Trajectories

Large language model agents solve tasks by generating trajectories that interleave planning, tool calls, and intermediate results. Current evaluation metrics reduce such a trajectory to a binary success flag, compare it against a reference by exact matching, or delegate judgment to another language model. A success flag cannot distinguish a sound solution from one that succeeds by luck, and says nothing about why a failed run went wrong. Exact matching penalizes plans that are valid but reordered or decomposed differently from the reference. We reframe trajectory evaluation as a distance between the agent's execution graph and a set of valid solution graphs, and instantiate it via an unbalanced fused Gromov-Wasserstein transport problem over attributed dependency graphs. The resulting score, termed OTAP (Optimal Transport for Agentic Planning), is a pseudo-metric that is provably invariant to dependency-preserving reorderings and has bounded sensitivity to redundant steps. Its unbalanced marginals handle missing or hallucinated steps without forcing a match, and its soft coupling accommodates variation in plan granularity. On controlled perturbations and three public benchmarks, OTAP separates valid from invalid trajectories in a regime where semantics-only metrics score below chance. Its advantage tracks the fidelity of the dependency graph: largest where edges follow from operator semantics, smallest where they are inferred from free text. Where a formal verifier exists, strict surface metrics predict validity better than OTAP does, which places OTAP in open-ended domains where no verifier is available.

  • 3 authors
·
Jul 31

Time Present and Time Past: Benchmarking Large Language Models on Temporally Evolving Document Understanding

Evolving documents, such as laws, tax codes, and software documentation, are amended, replaced, and sometimes reverted over time, so a question has different correct answers at different dates. In contrast to encyclopedic knowledge, where an old fact is simply overwritten, an amendment is itself an official text that states what it replaces and when it takes effect, and the earlier version stays correct for its validity period. The central challenge is therefore version resolution, that is, identifying the version in force on the queried date. Existing temporal QA datasets treat time only as an annotation, so version resolution stays untested. We present TIDE, an expert-verified benchmark of 3,050 QA pairs over 644 official customs instruments issued between 1969 and 2025 by the Government of Bangladesh, covering eight task types over deeply code-mixed documents that are heterogeneous in layout and dated in two calendars. In addition, we evaluate nine recent LLMs under a single protocol across parametric, gold-context, and retrieval access, scored by a three-judge LLM council with a hard date gate separating correct meaning from correct time. The best macro-averaged accuracy is only 68.5%. Resolving a version from an implicit date reaches 59.7%, and detecting that the supplied version does not govern the query reaches only 26.7%. Models are more likely to find correct versions than to reject incorrect ones, and they tend to follow a confident parametric answer over the supplied authoritative text. All code and data are available at https://github.com/icsetepa44/TIDE

  • 7 authors
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Aug 8

Test-Time Strategies for More Efficient and Accurate Agentic RAG

Retrieval-Augmented Generation (RAG) systems face challenges with complex, multihop questions, and agentic frameworks such as Search-R1 (Jin et al., 2025), which operates iteratively, have been proposed to address these complexities. However, such approaches can introduce inefficiencies, including repetitive retrieval of previously processed information and challenges in contextualizing retrieved results effectively within the current generation prompt. Such issues can lead to unnecessary retrieval turns, suboptimal reasoning, inaccurate answers, and increased token consumption. In this paper, we investigate test-time modifications to the Search-R1 pipeline to mitigate these identified shortcomings. Specifically, we explore the integration of two components and their combination: a contextualization module to better integrate relevant information from retrieved documents into reasoning, and a de-duplication module that replaces previously retrieved documents with the next most relevant ones. We evaluate our approaches using the HotpotQA (Yang et al., 2018) and the Natural Questions (Kwiatkowski et al., 2019) datasets, reporting the exact match (EM) score, an LLM-as-a-Judge assessment of answer correctness, and the average number of turns. Our best-performing variant, utilizing GPT-4.1-mini for contextualization, achieves a 5.6% increase in EM score and reduces the number of turns by 10.5% compared to the Search-R1 baseline, demonstrating improved answer accuracy and retrieval efficiency.

  • 10 authors
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Mar 12 2

Tomayto, Tomahto. Beyond Token-level Answer Equivalence for Question Answering Evaluation

The predictions of question answering (QA)systems are typically evaluated against manually annotated finite sets of one or more answers. This leads to a coverage limitation that results in underestimating the true performance of systems, and is typically addressed by extending over exact match (EM) with pre-defined rules or with the token-level F1 measure. In this paper, we present the first systematic conceptual and data-driven analysis to examine the shortcomings of token-level equivalence measures. To this end, we define the asymmetric notion of answer equivalence (AE), accepting answers that are equivalent to or improve over the reference, and publish over 23k human judgments for candidates produced by multiple QA systems on SQuAD. Through a careful analysis of this data, we reveal and quantify several concrete limitations of the F1 measure, such as a false impression of graduality, or missing dependence on the question. Since collecting AE annotations for each evaluated model is expensive, we learn a BERT matching (BEM) measure to approximate this task. Being a simpler task than QA, we find BEM to provide significantly better AE approximations than F1, and to more accurately reflect the performance of systems. Finally, we demonstrate the practical utility of AE and BEM on the concrete application of minimal accurate prediction sets, reducing the number of required answers by up to x2.6.

  • 5 authors
·
Feb 15, 2022

Looking Complete Is Not Being Grounded: Evaluating LLM Sitreps Against Human-Authored Situation Reports

Evaluation for automatic crisis reporting should measure what practitioners need, not what is convenient to compare. Through LLM-assisted, author-approved content analysis, we derive a 15-slot information schema from professional humanitarian situation reports using qualitative content analysis, then evaluate 121 human and 261 LLM-generated reports across five disasters and three hazard types. Under google/gemini-3.7-flash on Cyclone Idai, the best machine arm is nominally above the empirical human ceiling (0.827 vs. 0.821), but the difference is statistically indistinguishable from zero (95\% bootstrap CI [-.049,.059]; permutation p=.852), and the ordering does not replicate under openai/gpt-5.6-luna. On a blind 100-item Idai sample, the author agrees with the Gemini judge at 0.910 accuracy and unweighted Cohen's κ=.799. All four judges clear the plan's raw-agreement criterion of .7; only Gemini reaches .7 on chance-corrected κ. Across the three primary events, machine reports reproduce 5.4-11.0% of same-day official figures. Across those same events, raw exact-number matching links 14.3-19.6% of official figures and 85.4-90.1% of machine figures to the social stream; manual audit confirms 45/50 declared absences, 4/25 official matches, and 24/25 machine matches semantically. The issuing-provenance gap is positive in all 12 observed event-judge cells: report date, organisation, series, and authority were not supplied at professional-report coverage in any cell. On the three primary events, ROUGE-L is uninformative, BERTScore is negatively associated with completeness after multiplicity correction, and a generic LLM judge changes sign.

  • 1 authors
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Oct 13 2

PyMETA: Evaluating Student Code Diagnosis on and Beyond the First Execution Error

Large language models can diagnose a student program from its code, problem statement, and reference solution. Evaluating this ability requires a clear definition of what counts as the correct diagnosis. We introduce PyMETA, a Python error dataset with 48,646 student submissions to 155 problems. Every submission has a single label for the first execution error identified by an Online Judge, or No Error when the program passes all tests. A targeted subset of 97 submissions also has expert labels collected through iterative repair and re-execution. The taxonomy has three levels; its most detailed level contains 14 labels, including No Error, Logic Error, named Python exceptions, and an Other Errors category. We evaluate two finetuned models and two groups of prompted LLMs: four earlier models and four recent models. When evaluated against the first execution error, the recent prompted models reach 87.5--93.8% macro F1, above the strongest finetuned baseline at 80.6%. This is the opposite of the comparison obtained with the earlier prompted models. On the 97-item expert subset, however, exact-set match is only 43.3--48.5%, although sample F1 is about 79--81%. Output format also matters. On the same 45 audited submissions whose expert label sets do not contain Logic Error, none of the four recent models returns that label under single-error prompting, but 46.7--57.8% of their multi-error outputs include it, usually after an explicit-error label. The results show that model rankings and claims about label bias depend on the meaning of the gold label, the number of labels a model may return, and the scoring rule.

  • 6 authors
·
Sep 14

Precision Is Not Faithfulness: Coverage-Aware Evaluation of Grounded Generation with a Complete Oracle

Reference-free faithfulness metrics verify each atomic claim a model makes against ground truth, and are increasingly used to evaluate grounded generation. We show they share a blind spot: they measure only precision -- are the stated claims supported? -- and therefore reward abstention, since a model can score near-perfect faithfulness by saying almost nothing. We make this measurable using Formula 1 telemetry, a domain where strategic ground truth is derived deterministically and, crucially, completely: for each decision we know the full set of facts that mattered. This completeness -- absent in open-domain faithfulness benchmarks -- lets us measure recall (coverage of the relevant facts) exactly, alongside precision. On a multilingual (EN/ES/PT) benchmark of 7,253 decision instances spanning 150 races, the most precise frontier model covers under half of the relevant facts and ranks last by F1, so requiring coverage reorders the systems; the same effect reappears in a second complete-oracle domain (NOAA weather forecasts). A prompt ablation shows the low coverage is not an under-prompting artifact: explicitly asking models to be thorough does not close the gap. We pair faithfulness with coverage into a single score, validate the metric (controlled perturbation; agreement across a model-free regex extractor and a cross-family LLM extractor, system-level Spearman 1.0), and give a verifier-guided generation method that improves precision and recall without references. We release the benchmark, structured annotations, metric, baselines, and an interactive demo.

  • 1 authors
·
Jun 7 6

Optimizing Retrieval-Augmented Generation: Analysis of Hyperparameter Impact on Performance and Efficiency

Large language models achieve high task performance yet often hallucinate or rely on outdated knowledge. Retrieval-augmented generation (RAG) addresses these gaps by coupling generation with external search. We analyse how hyperparameters influence speed and quality in RAG systems, covering Chroma and Faiss vector stores, chunking policies, cross-encoder re-ranking, and temperature, and we evaluate six metrics: faithfulness, answer correctness, answer relevancy, context precision, context recall, and answer similarity. Chroma processes queries 13% faster, whereas Faiss yields higher retrieval precision, revealing a clear speed-accuracy trade-off. Naive fixed-length chunking with small windows and minimal overlap outperforms semantic segmentation while remaining the quickest option. Re-ranking provides modest gains in retrieval quality yet increases runtime by roughly a factor of 5, so its usefulness depends on latency constraints. These results help practitioners balance computational cost and accuracy when tuning RAG systems for transparent, up-to-date responses. Finally, we re-evaluate the top configurations with a corrective RAG workflow and show that their advantages persist when the model can iteratively request additional evidence. We obtain a near-perfect context precision (99%), which demonstrates that RAG systems can achieve extremely high retrieval accuracy with the right combination of hyperparameters, with significant implications for applications where retrieval quality directly impacts downstream task performance, such as clinical decision support in healthcare.

  • 4 authors
·
May 13, 2025 2

Injecting the BM25 Score as Text Improves BERT-Based Re-rankers

In this paper we propose a novel approach for combining first-stage lexical retrieval models and Transformer-based re-rankers: we inject the relevance score of the lexical model as a token in the middle of the input of the cross-encoder re-ranker. It was shown in prior work that interpolation between the relevance score of lexical and BERT-based re-rankers may not consistently result in higher effectiveness. Our idea is motivated by the finding that BERT models can capture numeric information. We compare several representations of the BM25 score and inject them as text in the input of four different cross-encoders. We additionally analyze the effect for different query types, and investigate the effectiveness of our method for capturing exact matching relevance. Evaluation on the MSMARCO Passage collection and the TREC DL collections shows that the proposed method significantly improves over all cross-encoder re-rankers as well as the common interpolation methods. We show that the improvement is consistent for all query types. We also find an improvement in exact matching capabilities over both BM25 and the cross-encoders. Our findings indicate that cross-encoder re-rankers can efficiently be improved without additional computational burden and extra steps in the pipeline by explicitly adding the output of the first-stage ranker to the model input, and this effect is robust for different models and query types.

  • 5 authors
·
Jan 22, 2023

ListQA: A Benchmark for Evaluating List-Formatted Factual Knowledge Retrieval in Large Language Models

Many real-world questions demand not a single fact but an organized collection of them, yet existing factual knowledge benchmarks almost exclusively target single answer retrieval. We introduce ListQA, a benchmark of 9,045 human-curated, cross-validated questions (audited error rate of 1.7%) that require LLMs to recall multiple facts and compose them into structured lists of 3-10 elements. Questions range from flat lists ("Which NCAA teams went undefeated between 2000 and 2024?") to hierarchical lists with sub-attributes ("...and what was their record and result?"), spanning eight categories across 60+ countries. An evergreen design (explicit temporal constraints or historically immutable facts) keeps ground truth valid without periodic updates. For evaluation, we frame element matching as a linear sum assignment problem: optimal bipartite matching paired with LLM-based semantic grading jointly captures factual accuracy, hallucination, and format compliance. We benchmark 34 models (8 families, 42 configurations across standard and thinking enabled inference) and find: the best standard-inference model scores below 37% LLM-Judge-F1, multi-faceted questions are harder across the board, and providing the source Wikipedia page lifts scores dramatically, confirming that models can organize facts but struggle to retrieve them from parameters alone. Extended analyses cover base vs. instruction-tuned checkpoints and token efficiency. We release the dataset and evaluation code.

AmazonScience Amazon Science
·
Oct 12

Option-Aware Retrieval and Task-Specific VLM Adaptation for Medical VQA

We describe our submission to the MedReason 2026 challenge, covering multiple-choice (MCQ) and open-ended (OE) medical visual question answering (VQA) under fully offline, containerized inference. Our first finding is that MCQ retrieval must compare answer semantics rather than answer labels: labels are independently assigned per question, so copying a retrieved neighbor's label transfers no useful information, whereas scoring each current option's text against correct-answer text from similar training cases raises retrieval-only accuracy from 20.0\% to 57.5\% on a 200-case retrieval-excluded development holdout. Our second finding attributes the submitted system's accuracy: holding the task-specific MCQ Low-Rank Adaptation (LoRA) adapter fixed and varying the number \(k\) of in-prompt retrieved examples changes accuracy by at most one case --- 187/200 (93.5\%) at both \(k=0\) and the adapter's training-time \(k=1\), 188/200 (94.0\%) at the packaged runtime's default \(k=3\) --- and the submitted confidence-gated override adds no net accuracy on top of \(k=3\), selecting the VLM in 198/200 cases. With the final MCQ adapter fixed, retrieval changes accuracy by at most one case, and gating provides no net gain. On 20 OE cases, token-F1 and RaTEScore~zhao2024ratescore decrease as \(k\) grows, but paired sign tests on token-F1 differences are nonsignificant (\(p \ge 0.29\)); a single-annotator comparison found 6/20 wrong-anchor errors for the final configuration and 14/20 for an earlier configuration that jointly differed in routing, adapter, and prompting. The system reaches 94.0\% MCQ accuracy on the development holdout and 93.20\% on the organizer's official pre-evaluation, versus 29.43\% for the off-the-shelf reference baseline, while both of the organizer's open-ended scores are lower than that baseline's (ground-truth agreement 1.245 versus 1.588, visual accuracy 1.995 versus 2.696, each out of 4).

  • 3 authors
·
Sep 13

xFinder: Large Language Models as Automated Evaluators for Reliable Evaluation

The continuous advancement of large language models (LLMs) has brought increasing attention to the critical issue of developing fair and reliable methods for evaluating their performance. Particularly, the emergence of cheating phenomena, such as test set leakage and prompt format overfitting, poses significant challenges to the reliable evaluation of LLMs. As evaluation frameworks commonly use Regular Expression (RegEx) for answer extraction, models may adjust their responses to fit formats easily handled by RegEx. Nevertheless, the key answer extraction module based on RegEx frequently suffers from extraction errors. Furthermore, recent studies proposing fine-tuned LLMs as judge models for automated evaluation face challenges in terms of generalization ability and fairness. This paper comprehensively analyzes the entire LLM evaluation chain and demonstrates that optimizing the key answer extraction module improves extraction accuracy and enhances evaluation reliability. Our findings suggest that improving the key answer extraction module can lead to higher judgment accuracy and improved evaluation efficiency compared to the judge models. To address these issues, we propose xFinder, a novel evaluator for answer extraction and matching in LLM evaluation. As part of this process, we create a specialized dataset, the Key Answer Finder (KAF) dataset, to ensure effective model training and evaluation. Generalization tests and real-world evaluations show that the smallest xFinder model, with only 500 million parameters, achieves an average extraction accuracy of 93.42\%. In contrast, RegEx accuracy in the best evaluation framework is 74.38\%. The final judgment accuracy of xFinder reaches 97.61\%, outperforming existing evaluation frameworks and judge models.

  • 7 authors
·
May 20, 2024

Evaluating Commercial AI Chatbots as News Intermediaries

AI chatbots are rapidly shaping how people encounter the news, yet no prior study has systematically measured how accurately these systems, with their proprietary search integrations and retrieval-synthesis pipelines, handle emerging facts across languages and regions. We present a 14-day (February 9-22, 2026) evaluation of six AI chatbots (Gemini 3 Flash and Pro, Grok 4, Claude 4.5 Sonnet, GPT-5 and GPT-4o mini) on 2,100 factual questions derived from same-day BBC News reporting across six regional services (US & Canada, Arabic, Afrique, Hindi, Russian, Turkish). The best systems achieve over 90% multiple-choice accuracy on questions about events reported hours earlier. The same systems, however, lose 11-13% under free-response evaluation, and 16-17% across the cohort. We further characterize three failure patterns. First, every model achieves its lowest accuracy on Hindi (79% vs. 89-91% elsewhere) and citations indicate an Anglophone retrieval bias (e.g., models answering Hindi queries cite English Wikipedia more than any Hindi outlet). Second, retrieval, not reasoning, failures drive over 70% of all errors. When models retrieve a correct source, they often extract the correct answer; the problem is to land on the right source in the first place. Third, models achieving 88-96% accuracy on well-formed questions drop to 19-70% when questions contain subtle false premises, with the most vulnerable model accepting fabricated facts 64% of the time. We also identify a detection-accuracy paradox: the best false-premise detector ranks second in adversarial accuracy (abstention rate), while a weaker detector ranks first, showing that premise detection and answer recovery are partially independent capabilities. Overall, these suggest that high accuracy can mask systematic regional inequity, near-total dependence on retrieval infrastructure, and vulnerability to imperfect queries real users pose.

  • 8 authors
·
May 20

LENS: In-Context Search via Latent Evidence Exploration over Dynamic Raw Documents

LLM agents increasingly answer questions over dynamic raw-document collections, where files may change before preprocessing, and relevant evidence (spans, sections, pages, or tables) is query-dependent. Existing retrieval-augmented approaches pre-materialize evidence via fixed chunking, embeddings, or persistent indexes: effective for lookup, yet costly, stale-prone, and committed to a granularity before the query is known. We formulate in-context search as Budgeted Evidence Localization over a latent evidence space induced by dynamic raw documents and propose LENS (Latent Evidence Exploration and Search), an index-free framework. Instead of pre-materializing the evidence space, LENS maintains a query-conditioned belief over candidate units, iteratively selecting candidates via complementary lexical, local, and exploratory proposal policies, updating the belief via an LLM relevance oracle, and narrowing toward high-posterior regions under a controllable budget. Evidence is consolidated into compact, source-grounded regions of interest and compressed into self-organizing knowledge clusters reused across related queries. On a controlled 500-question evaluation with matched corpus snapshots, LENS reaches 62.4% exact match and 84.8% evidence recall vs. 65.2% exact match but 50.4% evidence recall for a ReAct-style baseline. Across scales, LENS gives the strongest supporting-fact localization and answer grounding. On a fixed 150-question fullwiki subset over the raw Wikipedia dump with zero indexing, LENS and ReAct are nearly tied in official answer quality (43.3% vs. 42.7% EM), with LENS grounding more answers in retrieved evidence (84.0% vs. 70.7%). A no-retrieval Closed-Book reference highlights the contribution of model memory. LENS is query-ready after corpus changes, needs no preprocessing or persistent index, and preserves source-grounded evidence localization throughout.

  • 6 authors
·
Aug 17

RetrievalRouter: Joint Modality and Architecture Selection for Document Retrieval

Document retrieval increasingly supports high-stakes information access in finance, healthcare, and law. Modern retrieval pipelines vary both in modality (text or multimodal) and in retrieval architecture (dense or late-interaction). These choices impose a hard compromise: the most effective pipelines are too slow and expensive to run at scale, while the fastest fail to retrieve evidence from complex documents. Practitioners must therefore choose between missed evidence and unusable latency, with no principled basis for adapting that choice at the query level. We show that this compromise is unnecessary. Not every query requires the same pipeline. Across benchmarks spanning financial and scientific corpora, no static pipeline dominates. We introduce RetrievalRouter, a lightweight query-aware router that learns, from the query text alone, which retrieval pipeline best fits each query. A single tunable parameter exposes the full accuracy-latency frontier, and for every static baseline, RetrievalRouter offers an operating point that is simultaneously more accurate and faster. Against the best static baseline, RetrievalRouter is 2.5% more accurate and 12.4 times faster. Furthermore, compared with prior adaptive strategy selection methods, RetrievalRouter achieves significantly higher nDCG@5 across accuracy-oriented settings, while matching or numerically outperforming them on both nDCG@5 and latency in latency-oriented settings. Our code and data are available at https://github.com/emrekuruu/retrieval-router.

  • 4 authors
·
Aug 25 2

A Controlled Candidate-Set Benchmark for Offline Satellite-Security Plan Decomposition

Some security-development settings require local models that map an objective to an ordered, checkable plan. We present a low-rank decomposition adapter and release a case-disjoint corpus with 24 authored decompositions and 83 derived next-step examples across 24 satellite-security cases. To prevent reference-plan leakage, prompts contain one objective and eight shuffled SPARTA candidates. The evaluation candidate sets are constructed with oracle inclusion of every reference technique, so this study measures selection from a controlled set, not retrieval. On six fixed cases and five decoding seeds, mean scores vary across adapters and prompted Qwen2.5 baselines; a separate greedy check over three adapter training seeds shows non-negligible training variance. A 24-fold greedy leave-one-case-out control at the two compact sizes likewise shows tradeoffs: at 1.5B, adapter precision is 0.583 against 0.480 for two-shot prompting, while recall is 0.586 against 0.660. Case-resampling intervals for adapter precision relative to the strongest prompted baseline cross zero at 1.5B and 7B. The adapter is also substantially more format-compliant, which prevents attributing all score differences to selection. Autoregressive next-step accuracy is 0.08, 0.06, and 0.29 at 0.5B, 1.5B, and 7B. We therefore offer the formulation, leakage-controlled dataset, reproducibility package, and descriptive analysis as a proof of concept, not evidence of a reliable stand-alone decomposition system or a general adapter advantage. A separate diagnostic tests contract reuse.

  • 3 authors
·
Jul 28

CliniQ: A Multi-faceted Benchmark for Electronic Health Record Retrieval with Semantic Match Assessment

Electronic Health Record (EHR) retrieval plays a pivotal role in various clinical tasks, but its development has been severely impeded by the lack of publicly available benchmarks. In this paper, we introduce a novel public EHR retrieval benchmark, CliniQ, to address this gap. We consider two retrieval settings: Single-Patient Retrieval and Multi-Patient Retrieval, reflecting various real-world scenarios. Single-Patient Retrieval focuses on finding relevant parts within a patient note, while Multi-Patient Retrieval involves retrieving EHRs from multiple patients. We build our benchmark upon 1,000 discharge summary notes along with the ICD codes and prescription labels from MIMIC-III, and collect 1,246 unique queries with 77,206 relevance judgments by further leveraging powerful LLMs as annotators. Additionally, we include a novel assessment of the semantic gap issue in EHR retrieval by categorizing matching types into string match and four types of semantic matches. On our proposed benchmark, we conduct a comprehensive evaluation of various retrieval methods, ranging from conventional exact match to popular dense retrievers. Our experiments find that BM25 sets a strong baseline and performs competitively to the dense retrievers, and general domain dense retrievers surprisingly outperform those designed for the medical domain. In-depth analyses on various matching types reveal the strengths and drawbacks of different methods, enlightening the potential for targeted improvement. We believe that our benchmark will stimulate the research communities to advance EHR retrieval systems.

  • 8 authors
·
Feb 10, 2025

Investigating Data Contamination in Modern Benchmarks for Large Language Models

Recent observations have underscored a disparity between the inflated benchmark scores and the actual performance of LLMs, raising concerns about potential contamination of evaluation benchmarks. This issue is especially critical for closed-source models and certain open-source models where training data transparency is lacking. In this paper we study data contamination by proposing two methods tailored for both open-source and proprietary LLMs. We first introduce a retrieval-based system to explore potential overlaps between evaluation benchmarks and pretraining corpora. We further present a novel investigation protocol named Testset Slot Guessing (TS-Guessing), applicable to both open and proprietary models. This approach entails masking a wrong answer in a multiple-choice question and prompting the model to fill in the gap. Additionally, it involves obscuring an unlikely word in an evaluation example and asking the model to produce it. We find that certain commercial LLMs could surprisingly guess the missing option in various test sets. Specifically, in the TruthfulQA benchmark, we find that LLMs exhibit notable performance improvement when provided with additional metadata in the benchmark. Further, in the MMLU benchmark, ChatGPT and GPT-4 demonstrated an exact match rate of 52\% and 57\%, respectively, in guessing the missing options in benchmark test data. We hope these results underscore the need for more robust evaluation methodologies and benchmarks in the field.

  • 5 authors
·
Nov 16, 2023

Legal RAG Bench: an end-to-end benchmark for legal RAG

We introduce Legal RAG Bench, a benchmark and evaluation methodology for assessing the end-to-end performance of legal RAG systems. As a benchmark, Legal RAG Bench consists of 4,876 passages from the Victorian Criminal Charge Book alongside 100 complex, hand-crafted questions demanding expert knowledge of criminal law and procedure. Both long-form answers and supporting passages are provided. As an evaluation methodology, Legal RAG Bench leverages a full factorial design and novel hierarchical error decomposition framework, enabling apples-to-apples comparisons of the contributions of retrieval and reasoning models in RAG. We evaluate three state-of-the-art embedding models (Isaacus' Kanon 2 Embedder, Google's Gemini Embedding 001, and OpenAI's Text Embedding 3 Large) and two frontier LLMs (Gemini 3.1 Pro and GPT-5.2), finding that information retrieval is the primary driver of legal RAG performance, with LLMs exerting a more moderate effect on correctness and groundedness. Kanon 2 Embedder, in particular, had the largest positive impact on performance, improving average correctness by 17.5 points, groundedness by 4.5 points, and retrieval accuracy by 34 points. We observe that many errors attributed to hallucinations in legal RAG systems are in fact triggered by retrieval failures, concluding that retrieval sets the ceiling for the performance of many modern legal RAG systems. We document why and how we built Legal RAG Bench alongside the results of our evaluations. We also openly release our code and data to assist with reproduction of our findings.

isaacus Isaacus
·
Mar 2 2

The Curious Case of Factual (Mis)Alignment between LLMs' Short- and Long-Form Answers

Large language models (LLMs) can correctly answer "When was Einstein born?" yet fail to provide the same date when writing about Einstein's life revealing a fundamental inconsistency in how models access factual knowledge across task complexities. While models display impressive accuracy on factual question-answering benchmarks, the reliability gap between simple and complex queries remains poorly understood, eroding their trustworthiness. In this work, we introduce Short-Long Form Alignment for Factual Question Answering (SLAQ), a controlled evaluation framework that compares LLMs' answers to the same factual questions asked (a) in isolation (short) vs. (b) integrated into complex queries (long). Looking at 16 LLMs across 600 queries, we find a systematic misalignment of answers to the corresponding short and long queries. We further uncover position-dependent accuracy loss and momentum effects where consecutive correct or incorrect answers create self-reinforcing patterns. Through mechanistic analysis, we find that aligned facts activate overlapping model internals, and that metrics based on mechanistic similarity can predict short-long answer alignment with up to 78% accuracy. Our work establishes factual consistency over query complexity as an important aspect of LLMs' trustworthiness and challenges current evaluation practices, which implicitly assume that good performance for simple factual queries implies reliability in more complex knowledge-seeking tasks too.

WueNLP WüNLP
·
Oct 13, 2025 2

Industrial-Instruction: An End-to-End Framework for Building Instruction-Tuning and Benchmark Datasets from Industrial Technical Reports

Industrial technical reports contain high-value knowledge for maintenance, troubleshooting, and product engineering, but their heterogeneous structure (dense prose, specifications, tables) makes them difficult to index and reason over with standard retrieval and QA pipelines, and no public instruction-tuning or benchmark datasets are built from such documents. We address this gap with Industrial-Instruction, contributing (i) two open QA datasets built from real industrial technical reports and (ii) the end-to-end pipeline that produces them. Using 906 public Panasonic documents (7,525 pages), we apply layout-aware extraction, build a semantic retrieval index, and synthesize multiple-choice QA grounded in retrieved evidence under five query-document relationships (irrelevant retrieval, single-/multi-document support, single-/multi-document answer). After filtering an initial 23.9k generated samples, each dataset provides approximately 13.6k QA pairs with source documents and a held-out benchmark split. Fine-tuning small open LLMs (under 10B parameters) improves Set-Match Accuracy from 28.5% to 42.0% and F1 from 46.6% to 63.5% on the Panasonic benchmark. We release two parallel versions built by the same pipeline: one generated with the open-weight Qwen3-30B-A3B-Instruct model and one with the closed, API-based Claude-Opus-4.6 model, enabling a direct comparison of open- versus frontier-model data generation. The Claude-Opus-4.6 dataset yields a cleaner raw corpus and larger fine-tuning gains, at roughly two orders of magnitude higher cost. MMLU evaluation shows models trained on the Claude-Opus-4.6 data retain essentially all general knowledge, versus a small but measurable forgetting effect for the Qwen-generated data. Together, these datasets and pipeline offer a practical, reproducible path toward scalable industrial benchmarks and training data from real-world documentation.

  • 5 authors
·
Aug 23 2

Is this Citation on Point?

In 2023, a New York judge sanctioned two attorneys in Mata v. Avianca for filing a brief with hallucinated citations generated by ChatGPT. Such failures are largely caught by database lookups; the harder problem is detecting citations that point to real cases but do not support the propositions for which they are offered -- a failure mode that existing evaluations of LLMs for legal use cases largely overlook. In this paper, we study proposition-level citation support verification through controlled perturbations of real legal citations obtained from two legal corpora, either replacing the cited case or changing only the pinpoint page within the same case. We evaluate fourteen model configurations on the resulting examples. Models catch 93-100% of wrong-case corruptions. They catch only 37-61% of wrong-pinpoint corruptions on court opinions and 52-83% on legal briefs. When models fail to catch wrong-pinpoint corruptions, they accept the citation based on topical overlap rather than page-level support. Scale and extended reasoning narrow the gap but do not close it: GPT-5.4 with high reasoning effort still misses 40% of pinpoint mismatches on court opinions and 18% on briefs. Prompting the model to verify support at the cited page improves recall, but it also raises the false positive rate. Recognizing the right legal topic and verifying support for the cited proposition are distinct capabilities, and current models conflate them.

bloomberg Bloomberg
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Aug 11 2

SuRe: Summarizing Retrievals using Answer Candidates for Open-domain QA of LLMs

Large language models (LLMs) have made significant advancements in various natural language processing tasks, including question answering (QA) tasks. While incorporating new information with the retrieval of relevant passages is a promising way to improve QA with LLMs, the existing methods often require additional fine-tuning which becomes infeasible with recent LLMs. Augmenting retrieved passages via prompting has the potential to address this limitation, but this direction has been limitedly explored. To this end, we design a simple yet effective framework to enhance open-domain QA (ODQA) with LLMs, based on the summarized retrieval (SuRe). SuRe helps LLMs predict more accurate answers for a given question, which are well-supported by the summarized retrieval that could be viewed as an explicit rationale extracted from the retrieved passages. Specifically, SuRe first constructs summaries of the retrieved passages for each of the multiple answer candidates. Then, SuRe confirms the most plausible answer from the candidate set by evaluating the validity and ranking of the generated summaries. Experimental results on diverse ODQA benchmarks demonstrate the superiority of SuRe, with improvements of up to 4.6% in exact match (EM) and 4.0% in F1 score over standard prompting approaches. SuRe also can be integrated with a broad range of retrieval methods and LLMs. Finally, the generated summaries from SuRe show additional advantages to measure the importance of retrieved passages and serve as more preferred rationales by models and humans.

  • 8 authors
·
Apr 16, 2024

Skill-based Agentic Evaluation for Real-time Data Science Tasks

We present a framework for evaluating data-science agents on live, continuously updated data using executable ground truth and format-agnostic factoid scoring. Consider this example query: "what were last week's audience sizes"---the reference answer changes as the underlying data changes, so static references become outdated and standard LLM-as-a-judge pipelines cannot verify responses against a fixed ground truth. Our central contribution, ground-truth-as-code, encodes each expected answer as an executable reference function that recomputes the answer directly from live data at evaluation time, ensuring the reference remains consistent with the system it describes. We combine this with a factoid-level, format-agnostic judge that decomposes both the agent's response and the computed ground truth into atomic claims and scores precision, recall, and accuracy over them, irrespective of the response format (prose, list, table, HTML, etc.). The approach is applicable to agents whose expected outputs can be expressed as executable data computations. We validate the framework through a human--LLM agreement study on an internally developed machine learning skill deployed in production, using a synthetic database constructed to reproduce production schemas and entity relationships. Relative to a natural-language ground-truth baseline, our method achieves a 29% improvement in the Matthews Correlation Coefficient (MCC)---a class-balanced measure of agreement between expert annotators and LLM-as-a-judge predictions---and a 16% reduction in token consumption per test case, while a self-directed baseline lacking explicit ground truth is anti-correlated with human judgment. Agents that perform multi-source data integration and computation over non-stationary data are routinely deployed in industry; we propose ground-truth-as-code as a practical methodology for their evaluation.

  • 7 authors
·
Sep 14

vstash: Local-First Hybrid Retrieval with Adaptive Fusion for LLM Agents

We present **vstash**, a local-first document memory system that combines vector similarity search with full-text keyword matching via Reciprocal Rank Fusion (RRF) and adaptive per-query IDF weighting. All data resides in a single SQLite file using sqlite-vec for approximate nearest neighbor search and FTS5 for keyword matching. We make four primary contributions. **(1)** Self-supervised embedding refinement via hybrid retrieval disagreement: across 753 BEIR queries on SciFact, NFCorpus, and FiQA, 74.5% produce top-10 disagreement between vector-heavy (vec=0.95, fts=0.05) and FTS-heavy (vec=0.05, fts=0.95) search (per-dataset rates 63.4% / 73.4% / 86.7%, Section 5.2), providing a free training signal without human labels. Fine-tuning BGE-small (33M params) with MultipleNegativesRankingLoss on 76K disagreement triples improves NDCG@10 on all 5 BEIR datasets (up to +19.5% on NFCorpus vs. BGE-small base RRF, Table 6). On 3 of 5 datasets, under different preprocessing, the tuned 33M-parameter pipeline matches or exceeds published ColBERTv2 results (110M params) and an untrained BGE-base (110M); on FiQA and ArguAna it underperforms ColBERTv2 (Section 5.5). **(2)** Adaptive RRF with per-query IDF weighting improves NDCG@10 on all 5 BEIR datasets versus fixed weights (up to +21.4% on ArguAna), achieving 0.7263 on SciFact with BGE-small. **(3)** A negative result on post-RRF scoring: frequency+decay, history-augmented recall, and cross-encoder reranking all failed to improve NDCG. **(4)** A production-grade substrate with integrity checking, schema versioning, ranking diagnostics, and a distance-based relevance signal validated on 50,425 relevance-judged queries across the 5 BEIR datasets. Search latency remains 20.9 ms median at 50K chunks with stable NDCG. The fine-tuned model is published as `Stffens/bge-small-rrf-v2` on HuggingFace. All code, data, and experiments are open-source.

  • 1 authors
·
Apr 15

Effective Transfer Learning for Identifying Similar Questions: Matching User Questions to COVID-19 FAQs

People increasingly search online for answers to their medical questions but the rate at which medical questions are asked online significantly exceeds the capacity of qualified people to answer them. This leaves many questions unanswered or inadequately answered. Many of these questions are not unique, and reliable identification of similar questions would enable more efficient and effective question answering schema. COVID-19 has only exacerbated this problem. Almost every government agency and healthcare organization has tried to meet the informational need of users by building online FAQs, but there is no way for people to ask their question and know if it is answered on one of these pages. While many research efforts have focused on the problem of general question similarity, these approaches do not generalize well to domains that require expert knowledge to determine semantic similarity, such as the medical domain. In this paper, we show how a double fine-tuning approach of pretraining a neural network on medical question-answer pairs followed by fine-tuning on medical question-question pairs is a particularly useful intermediate task for the ultimate goal of determining medical question similarity. While other pretraining tasks yield an accuracy below 78.7% on this task, our model achieves an accuracy of 82.6% with the same number of training examples, an accuracy of 80.0% with a much smaller training set, and an accuracy of 84.5% when the full corpus of medical question-answer data is used. We also describe a currently live system that uses the trained model to match user questions to COVID-related FAQs.

  • 5 authors
·
Aug 4, 2020

LitSearch: A Retrieval Benchmark for Scientific Literature Search

Literature search questions, such as "where can I find research on the evaluation of consistency in generated summaries?" pose significant challenges for modern search engines and retrieval systems. These questions often require a deep understanding of research concepts and the ability to reason over entire articles. In this work, we introduce LitSearch, a retrieval benchmark comprising 597 realistic literature search queries about recent ML and NLP papers. LitSearch is constructed using a combination of (1) questions generated by GPT-4 based on paragraphs containing inline citations from research papers and (2) questions about recently published papers, manually written by their authors. All LitSearch questions were manually examined or edited by experts to ensure high quality. We extensively benchmark state-of-the-art retrieval models and also evaluate two LLM-based reranking pipelines. We find a significant performance gap between BM25 and state-of-the-art dense retrievers, with a 24.8% difference in absolute recall@5. The LLM-based reranking strategies further improve the best-performing dense retriever by 4.4%. Additionally, commercial search engines and research tools like Google Search perform poorly on LitSearch, lagging behind the best dense retriever by 32 points. Taken together, these results show that LitSearch is an informative new testbed for retrieval systems while catering to a real-world use case.

  • 6 authors
·
Jul 10, 2024

Extracting alignment data in open models

In this work, we show that it is possible to extract significant amounts of alignment training data from a post-trained model -- useful to steer the model to improve certain capabilities such as long-context reasoning, safety, instruction following, and maths. While the majority of related work on memorisation has focused on measuring success of training data extraction through string matching, we argue that embedding models are better suited for our specific goals. Distances measured through a high quality embedding model can identify semantic similarities between strings that a different metric such as edit distance will struggle to capture. In fact, in our investigation, approximate string matching would have severely undercounted (by a conservative estimate of 10times) the amount of data that can be extracted due to trivial artifacts that deflate the metric. Interestingly, we find that models readily regurgitate training data that was used in post-training phases such as SFT or RL. We show that this data can be then used to train a base model, recovering a meaningful amount of the original performance. We believe our work exposes a possibly overlooked risk towards extracting alignment data. Finally, our work opens up an interesting discussion on the downstream effects of distillation practices: since models seem to be regurgitating aspects of their training set, distillation can therefore be thought of as indirectly training on the model's original dataset.

google Google
·
Oct 21, 2025 5