Daily Papers

Post-training data plays a pivotal role in shaping the capabilities of Large Language Models (LLMs), yet datasets are often treated as isolated artifacts, overlooking the systemic connections that underlie their evolution. To disentangle these complex relationships, we introduce the concept of data lineage to the LLM ecosystem and propose an automated multi-agent framework to reconstruct the evolutionary graph of dataset development. Through large-scale lineage analysis, we characterize domain-specific structural patterns, such as vertical refinement in math-oriented datasets and horizontal aggregation in general-domain corpora. Moreover, we uncover pervasive systemic issues, including structural redundancy induced by implicit dataset intersections and the propagation of benchmark contamination along lineage paths. To demonstrate the practical value of lineage analysis for data construction, we leverage the reconstructed lineage graph to create a lineage-aware diversity-oriented dataset. By anchoring instruction sampling at upstream root sources, this approach mitigates downstream homogenization and hidden redundancy, yielding a more diverse post-training corpus. We further highlight lineage-centric analysis as an efficient and robust topological alternative to sample-level dataset comparison for large-scale data ecosystems. By grounding data construction in explicit lineage structures, our work advances post-training data curation toward a more systematic and controllable paradigm.

Enterprise AI agents that share a memory store face two unaddressed risks: sensitive data can leak through legitimately computed results the requester could not derive, and departments can silently compute a same-named key performance indicator (KPI) through conflicting logic. Existing agent-memory systems (e.g., MemGPT, Zep, A-MEM) gate retrieval by content, ownership, and role, not derivation, missing a cached insight that embeds a forbidden column. We introduce the Analytical Memory Unit (AMU), a memory schema that attaches a full derivation (lineage) graph to every cached result, gated by a retrieval policy that serves a hit only when the requester is authorised for every column touched. Provided lineage recording is complete, we prove by construction that the policy blocks retrieval of results derived from a sensitive column outside the requester's permissions, at O(n) worst case -- a conditional design guarantee, not an empirical claim, that excludes derived features encoding sensitive information without naming their source. Eliminating measured leakage required 75-90% recorded lineage completeness, so we treat 90% as a conservative deployment target. Across six experiments, lineage-gated retrieval removes the 18.8-25.5% cross-department leakage naive content-gated memory suffers, keeping 81.5-82.6% of memory reuse at 13.8 microsecond worst-case overhead. A real-agent proof-of-concept with LLM-generated SQL is consistent with the guarantee: zero leaks over 9 round-trips, two conflicts caught automatically -- though a feasibility demonstration, not evidence of production viability. This offers a practical governance layer for shared agent memory, complementing source-layer access control and supporting EU AI Act compliance.

Predicting single-cell perturbation responses requires mapping between two unpaired populations of cells measured before and after the perturbation. Optimal transport (OT) provides a principled framework for constructing such mappings by minimizing the transport cost, and neural OT methods (e.g., CellOT) have been employed for this prediction task. However, these methods rely on a fixed transport cost, typically the squared Euclidean distance. This cost may connect cells with the wrong responses. Lineage tracing provides the information needed to learn the cost, as heritable barcodes link the cells of the same clone before and after the perturbation. Here, we propose \CloneOT, a neural inverse OT method that learns both the transport cost and the transport map from partially lineage-traced single-cell datasets. \CloneOT\ represents the cost as a neural network. It learns the cost by minimizing the extra cost that the lineage adds to the optimal transport, so that the cheapest transport keeps the cells of each clone together. Our experiments demonstrate that \CloneOT\ recovers the correct transport on 2D datasets, while the squared Euclidean cost fails. Moreover, \CloneOT\ outperforms five baselines on 14 lineage-tracing perturbation scenarios of cancer cells, for both seen and unseen clones. Furthermore, we show that \CloneOT\ reveals the clone-specific transcriptional programs of drug-tolerant persister cells and forecasts the fate of each clone from its cells before treatment. Our implementation is available at https://github.com/poseidonchan/CloneOT.

Given a well-behaved neural network, is possible to identify its parent, based on which it was tuned? In this paper, we introduce a novel task known as neural lineage detection, aiming at discovering lineage relationships between parent and child models. Specifically, from a set of parent models, neural lineage detection predicts which parent model a child model has been fine-tuned from. We propose two approaches to address this task. (1) For practical convenience, we introduce a learning-free approach, which integrates an approximation of the finetuning process into the neural network representation similarity metrics, leading to a similarity-based lineage detection scheme. (2) For the pursuit of accuracy, we introduce a learning-based lineage detector comprising encoders and a transformer detector. Through experimentation, we have validated that our proposed learning-free and learning-based methods outperform the baseline in various learning settings and are adaptable to a variety of visual models. Moreover, they also exhibit the ability to trace cross-generational lineage, identifying not only parent models but also their ancestors.

AI-generated music detectors are commonly compared using aggregate scores on benchmarks whose training overlap, generator lineage, source provenance, and audio-transformation history are only partially observable. This paper introduces ArtifactBench, a lineage-aware evaluation suite for measuring detector behavior across generator families and versions, real-music domains, collection-cohort shift, and inference coverage. The benchmark groups source recordings and their derived variants by content identity, separates calibration from final testing, records inference failures independently from classification errors, and reports source-level performance with uncertainty in addition to aggregate metrics. We evaluate multiple publicly available detectors under a version-pinned common protocol and examine how leakage control, cohort availability, threshold policy, and model-specific missingness alter measured performance and model ranking. On the 562-track common-success test intersection, ArtifactNet obtains 0.982 AUROC and 0.918 balanced accuracy, compared with 0.761/0.776 for the public Deezer detector; SpecTTTra and CLAM fall below 0.30 AUROC under this shifted cohort. These results also expose substantial generator- and real-domain shifts that aggregate scores alone conceal.

The peculiar long gamma-ray burst (GRB) event, GRB 211211A, is known for it is association with a kilonova feature. Whereas most long GRBs are thought to originate in the core collapse of massive stars, the presence of kilonova suggests GRB 211211A was instead produced by a merger of a compact object binary. Building on the interpretation put forward by Yang2022Natur.612..232Y--who argue that GRB 211211A was powered by a massive white-dwarf + neutron-star (WD-NS) merger--we adopt this WD-NS scenario as our observationally supported starting point. If the burst truly originates from that channel, its rarity must mirror the formation and merger rate of WD-NS binaries--a rate still largely unexplored in conventional massive-binary population studies. In this letter, we present a qualitative analysis based on binary evolution physics in order to understand the fraction of GRB 211211A in short GRBs (NS-WD/NS-NS fraction). Since the progenitors of massive WD-NS binaries occupy the initial mass function-preferred regime, where the zero-age main-sequence mass range of the assumed WD mass range (1.2-1.4,M_odot) is comparable to that of NSs, the NS-WD/NS-NS fraction emerging from our standard evolutionary path is expected to be sim14--37\%, far higher than the observed fraction (sim5\%). This discrepancy might imply a large, still-unidentified population of GRB 211211A-like events or an unusual origin of the NS-such as being hypernova-born or accretion-induced-collapse-born. Placing these results in a broader compact-binary context, implications for black-hole systems are also discussed.

Scientific ideas rarely start from a blank page. They inherit mechanisms, repair known limitations, and recombine pieces of earlier work, much like biological genomes. Current benchmarks still say little about whether AI systems can follow this inheritance structure. We present IdeaGene-Bench (IG-Bench), a benchmark for scientific lineage reasoning and lineage-grounded idea generation. IG-Bench is organized around the IdeaGene framework: each paper or proposal is represented as a set of minimal, typed, evidence-grounded Idea Genome objects, and a GenomeDiff aligns these objects to record inheritance, mutation, loss, external import, and novel insertion under six operational evolutionary dynamics. The benchmark contains 1,961 golden lineage traces, 1,085 curated Idea Genome objects, and 920 pairwise GenomeDiff records across 10 scientific domains. It supports two evaluations. IG-Exam (42 task types, 1,029 instances) tests closed-form lineage reasoning across Idea Genome abstraction, inheritance tracing, evolutionary reasoning, and lineage verification. IG-Arena evaluates generation with a lineage-conditioned Population-Evolution Score(PES), asking whether a proposal can be inserted as a coherent descendant of a given lineage population: it should inherit the right Idea Genome objects, vary meaningfully from nearby work, and offer selection value for future research. Experiments on 14 LLM-based scientists expose a compositional bottleneck. The strongest system reaches only 27.3% exact accuracy on lineage reasoning, and structured lineage context reshuffles system rankings rather than helping every participant uniformly.

Preparing high quality training data for foundation models requires scalable pipelines that transform heterogeneous documents and videos into structured records. Such pipelines expand each parent item into an ordered and input dependent sequence of children, whose counts may be long tailed. GPUs should batch children across parents while preserving parent relationships, child order, completion status, and result routing. Existing systems either hide parallelism behind coarse grained jobs or expose flat records that force applications to manage lineage and regrouping. We present RayOrch, a programming model and distributed execution engine that preserves parent child relations throughout execution. Programs declare ordered variable cardinality expansions and matching gathers. The compiler validates each pair, while the runtime records child membership, immediate parents, immutable ordinals, and terminal states. Per Call FIFO Ready Queues batch ready children across parents. Gathers reconstruct results from declared membership and ordinals rather than batch boundaries or completion order. Parents can advance as soon as all required children become terminal. Typed parent scoped failures suppress undispatched siblings of the failed parent while allowing unrelated parents to continue. On NVIDIA H20 GPUs, RayOrch achieves 15.14 times speedup when scaling MinerU from 4 to 64 GPUs and 7.82 times speedup when scaling a video pipeline from 8 to 64 GPUs. It reduces end to end time by 13.1 percent versus Ray Data and 29.0 percent versus Daft on MinerU, and by 16.0 percent versus Ray Data on Docling. Code available at https://github.com/OpenDCAI/RayOrch .

An edge server and nearby devices can train language models of different sizes together by mutual distillation. Federated unlearning (FU) and unlearning for large language models (LLMs) execute a removal request on one model. Under mutual distillation, however, the effect of the removed data has been copied into many students, and their uploads teach it back to the corrected teacher. We propose Holder-level Erasure via Replication-weighted Delta-closure (HERD), which decides which holders must be corrected. HERD records a knowledge lineage graph from the transfers that the server already performs and weights each edge by its transfer type. It computes how many times the residual at each holder will be copied and selects the cheapest set of holders whose correction bounds the cumulative residual after the request. A transfer guard and a rejoin rule cover the holders left uncorrected or offline. We prove that partial correction suffices only when the copy number of the lineage graph is below one, that averaging alone never reaches one, and that the correction set remains valid under link outages. On TOFU, HERD leaves 18% to 52% less cumulative residual than the strongest baseline at 6% to 12% of its correction cost.

Efficient experiment reproduction is critical to accelerating progress in artificial intelligence. However, the inherent complexity of method design and training procedures presents substantial challenges for automation. Notably, reproducing experiments often requires implicit domain-specific knowledge not explicitly documented in the original papers. To address this, we introduce the paper lineage algorithm, which identifies and extracts implicit knowledge from the relevant references cited by the target paper. Building on this idea, we propose AutoReproduce, a multi-agent framework capable of automatically reproducing experiments described in research papers in an end-to-end manner. AutoReproduce enhances code executability by generating unit tests alongside the reproduction process. To evaluate the reproduction capability, we construct ReproduceBench, a benchmark annotated with verified implementations, and introduce novel evaluation metrics to assess both the reproduction and execution fidelity. Experimental results demonstrate that AutoReproduce outperforms the existing strong agent baselines on all five evaluation metrics by a peak margin of over 70%. In particular, compared to the official implementations, AutoReproduce achieves an average performance gap of 22.1% on 89.74% of the executable experiment runs. The code will be available at https://github.com/AI9Stars/AutoReproduce.

Open-weight language models are fine-tuned, quantized, pruned, and merged, yet their provenance is often undocumented. We study data-free white-box lineage verification: can weights alone reveal whether two compatible model checkpoints share ancestry? Residual training produces a shared identity-aligned component in branch products, so this structure alone cannot establish ancestry. We remove it and compare checkpoint-specific structure across residual blocks, yielding a symmetric lineage score calibrated against independent checkpoints. On residual-MLP and GPT-2 benchmarks, the score separates fine-tuned, LoRA-merged, pruned, and quantized descendants from independent and distilled models (AUROC=1.0), distinguishing weight ancestry from behavioral similarity. Under function-preserving checkpoint laundering experiments, weight-space baselines lose margin or fail; our score remains unchanged and runs 76x faster than the nearest robust baseline on GPT-2. The projection-pairing signal appears across six language-model families and beyond, and a case study correctly identifies 3 related and 7 unrelated LLaMA-2 public checkpoints. Collectively, these results establish a passive, data-free provenance signal for compatible open-weight language-model checkpoints

In single-cell research, tracing and analyzing high-throughput single-cell differentiation trajectories is crucial for understanding biological processes. Key to this is the robust modeling of hierarchical structures that govern cellular development. Traditional methods face limitations in computational cost, performance, and stability. VAE-based approaches have made strides but still require branch-specific network modules, limiting their scalability and stability, while often suffering from posterior collapse. To overcome these challenges, we introduce HDTree, a generative modeling framework designed for robust lineage inference. HDTree captures tree relationships within a hierarchical latent space using a unified hierarchical codebook and employs a quantized diffusion process to model continuous cell state transitions. By aligning the generative process with the Waddington landscape, this method not only improves stability and scalability but also enhances the biological plausibility of inferred lineages. HDTree's effectiveness is demonstrated through comparisons on both general-purpose and single-cell datasets, where it outperforms existing methods in lineage inference accuracy, reconstruction quality, and hierarchical consistency. These contributions enable accurate and efficient modeling of cellular differentiation paths, offering reliable insights for biological discovery.\footnote{Code is available at https://github.com/zangzelin/code\_HDTree\_icml.

The proliferation of Reinforcement Learning from Verifiable Rewards (RLVR) datasets has exacerbated provenance collapse due to unclear lineage among existing datasets. To bridge this fragmented RLVR data landscape, we propose Atomic-source Tracing via Lineage-Aware Search (ATLAS), a systematic framework for tracing RLVR datasets back to their atomic sources, attributing over 99.7% of 1.45M instances to 20 atomic sources. Our analysis reveals that most RLVR datasets are variants of a small set of shared upstream sources, with few introducing genuinely new data, and many facing data contamination risks. These findings naturally motivate us to curate a new RLVR dataset, DAPO++, and to benchmark existing datasets from a lineage-aware perspective. To this end, we propose Source-level Counterfactual Attribution (SCA) as a guiding principle to curate a decontaminated training dataset with concentrated learning signals. Essentially, SCA measures a sample's marginal utility by comparing per-atomic-source RL checkpoints against a shared base model. Building upon these attribution signals, we further design a composite dataset quality score Q that strongly correlates with downstream RLVR performance. Experiments on Qwen3 series models verify that DAPO++ consistently improves performance on held-out benchmarks, while Q reliably predicts downstream RLVR training effectiveness. Our code and data is available at https://github.com/Celine-hxy/ATLAS.

Memory, planning, reflection, and tool use are often compared as feature labels, obscuring the control semantics that determine how an agent actually runs. This review connects ten historical cognitive architectures, eight language-agent runtime families, and forty-two mechanism-focused modern systems. We reconstruct each mechanism through state, control, transition, persistence, failure, learning, and resource governance, then code evidence relation (E1-E4) separately from migration depth (D0-D4). The resulting landscape is uneven. Modern agents have operationalized substantial parts of adaptive memory, failure recovery, dynamic team selection, workflow search, skill induction, resource scheduling, and uncertainty-conditioned action, although often through independent convergence rather than documented inheritance. The strongest remaining opportunities lie in couplings among mechanisms. Closest-baseline screening closes one proposed gap: GraSP already combines calibrated multi-skill selection, typed compilation, verification, bounded repair, and replanning or ReAct fallback. Five residual bundles remain: activation with latency and action utility; typed impasse with isolated substates and resolution compilation; bounded content competition with broadcast and admission learning; persistent intention with reconsideration and live method authority; and uncertainty with resource allocation, interruption, and stopping. We contribute a distinctive-mechanism catalog, an auditable evidence-depth framework, and a falsifiable agenda for testing these bundles as composable runtime invariants.