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Oct 16

MCP Safety Audit: LLMs with the Model Context Protocol Allow Major Security Exploits

To reduce development overhead and enable seamless integration between potential components comprising any given generative AI application, the Model Context Protocol (MCP) (Anthropic, 2024) has recently been released and subsequently widely adopted. The MCP is an open protocol that standardizes API calls to large language models (LLMs), data sources, and agentic tools. By connecting multiple MCP servers, each defined with a set of tools, resources, and prompts, users are able to define automated workflows fully driven by LLMs. However, we show that the current MCP design carries a wide range of security risks for end users. In particular, we demonstrate that industry-leading LLMs may be coerced into using MCP tools to compromise an AI developer's system through various attacks, such as malicious code execution, remote access control, and credential theft. To proactively mitigate these and related attacks, we introduce a safety auditing tool, MCPSafetyScanner, the first agentic tool to assess the security of an arbitrary MCP server. MCPScanner uses several agents to (a) automatically determine adversarial samples given an MCP server's tools and resources; (b) search for related vulnerabilities and remediations based on those samples; and (c) generate a security report detailing all findings. Our work highlights serious security issues with general-purpose agentic workflows while also providing a proactive tool to audit MCP server safety and address detected vulnerabilities before deployment. The described MCP server auditing tool, MCPSafetyScanner, is freely available at: https://github.com/johnhalloran321/mcpSafetyScanner

  • 2 authors
·
Apr 2, 2025 3

WildMatch: Weakly Supervised Image Matcher Adaptation for Wildlife Re-Identification

Individual animal re-identification from camera-trap imagery is an instance retrieval problem central to non-invasive wildlife monitoring: a query image must retrieve the correct individual from a reference set of known animals. This requires computer vision models to recognize distinctive local patterns in fur, skin, or other visual markings. Current approaches either learn global embeddings as a classification problem, requiring many labeled images per individual while largely ignoring local evidence, or apply off-the-shelf, domain-agnostic image matchers. Although such matchers are pretrained on large and diverse image collections, adapting them to wildlife imagery is challenging because available datasets are small and lack correspondence-level annotations. We study weakly supervised adaptation of a pretrained keypoint matcher using only identity labels, without keypoint-level or geometric correspondence ground truth. We mine informative image pairs with the pretrained matcher, derive weak positive and negative supervision from identity agreement, and contrastively fine-tune the matching network to strengthen correspondences for same-identity pairs and suppress them for different identities. Across open-source wildlife re-identification datasets, our approach improves accuracy over off-the-shelf matchers and a state-of-the-art local--global fusion method. Under an open-world protocol with held-out individuals, it learns a transferable correspondence prior rather than memorizing training identities. To our knowledge, this is the first study of matcher-level, identity-supervised adaptation for animal re-identification. Our method enables data-efficient specialization of image matching models to wildlife domains using identity annotations already available in typical monitoring datasets.

  • 6 authors
·
Oct 4 1

OpenCoder: The Open Cookbook for Top-Tier Code Large Language Models

Large language models (LLMs) for code have become indispensable in various domains, including code generation, reasoning tasks and agent systems.While open-access code LLMs are increasingly approaching the performance levels of proprietary models, high-quality code LLMs suitable for rigorous scientific investigation, particularly those with reproducible data processing pipelines and transparent training protocols, remain limited. The scarcity is due to various challenges, including resource constraints, ethical considerations, and the competitive advantages of keeping models advanced. To address the gap, we introduce OpenCoder, a top-tier code LLM that not only achieves performance comparable to leading models but also serves as an ``open cookbook'' for the research community. Unlike most prior efforts, we release not only model weights and inference code, but also the reproducible training data, complete data processing pipeline, rigorous experimental ablation results, and detailed training protocols for open scientific research. Through this comprehensive release, we identify the key ingredients for building a top-tier code LLM: (1) code optimized heuristic rules for data cleaning and methods for data deduplication, (2) recall of text corpus related to code and (3) high-quality synthetic data in both annealing and supervised fine-tuning stages. By offering this level of openness, we aim to broaden access to all aspects of a top-tier code LLM, with OpenCoder serving as both a powerful model and an open foundation to accelerate research, and enable reproducible advancements in code AI.

  • 19 authors
·
Nov 7, 2024 6

EG-VQA: Benchmarking Verifiable Video Question Answering with Grounded Temporal Evidence

Recent advances in Video Large Language Models (Video-LLMs) have yielded promising performance on video question answering (VideoQA). Nevertheless, existing benchmarks are predominantly evaluated through answer correctness, while the grounding of predictions in relevant video evidence remains largely unexamined. This disconnect between answer generation and evidence understanding motivates the construction of the Evidence-Grounded Video Question Answering Benchmark (EG-VQA), an open-ended evaluation protocol in which each QA pair is explicitly annotated with supporting temporal evidence, thereby requiring joint reasoning and precise evidence localization. EG-VQA is comprised of 2,067 videos and 11,838 QA pairs with fine-grained evidence annotations. To evaluate predicted evidence, Evidence-Grounded F1 (EG-F1) is introduced as a unified metric in which temporal alignment and semantic consistency against ground-truth evidence are jointly measured. Experimental evaluation reveals that even strong proprietary models struggle to accurately ground their predictions, exposing a fundamental discrepancy between answer correctness and faithful evidence localization. To bridge this gap, EG-Reasoner, an evidence-grounded reasoning model trained with explicit supervision, is proposed. State-of-the-art performance is achieved among open-source models, with results competitive against proprietary systems, particularly pronounced gains are observed on reasoning-intensive tasks such as counterfactual questions. These findings demonstrate that scaling alone is insufficient for robust video understanding and that structured evidence supervision is essential for the development of more reliable and interpretable VideoQA systems.

  • 5 authors
·
Jun 22

AI-Driven, Timing-Aware Power Optimization

Post-route power recovery changes cell choices under tightly coupled timing, electrical and physical constraints, and the value of each change depends on what it costs to repair its side effects. We propose an AI-driven framework in which a learned model drives both phases of the optimization: it ranks the powerrecovery edits to try and the repair actions that follow, while deterministic electronic design automation (EDA) analyses govern every acceptance. The framework records baseline constraint margins, identifies the damage a recovery transaction introduces in each analysis view, holds pre-existing violations at their baseline rather than working them inside the power step, and caps repair spending at a fraction of the measured saving. An ensemble of gradient-boosted models predicts power change, normalized damage reduction and constraint-regression risk from action and timing-context features available before each trial; calibrated, conservative estimates feed separate acquisition scores for recovery and repair, with a deterministic fallback when the model is uncertain. Recovery and repair remain speculative until physical implementation and fresh analysis establish baseline preservation and positive net saving. We specify the contract, the learned policy, the transactional flow and a pre-registered public evaluation protocol on open designs. Evidence from a companion study on public designs supports the contract; the learned policy is proposed, and no trained-model results or proprietary design measurements are reported.

  • 1 authors
·
Oct 7 1

AEGIS: Assay-Aware Protocol Validation and Runtime Monitoring for Open-Source Liquid Handling Robots

Self-driving laboratories increasingly rely on low-cost liquid handlers such as the Opentrons OT-2, which ship without the pressure-based aspiration monitoring of Hamilton or Tecan systems and are typically run open-loop. Two failure modes go undetected: protocols that are syntactically valid but violate assay-specific invariants (e.g., tip reuse between a PCR template and a no-template control), and physical execution failures (partial dispense, air bubbles, missing tips) at runtime. We present AEGIS, a two-layer guardian for both. Layer 1 pairs a curated machine-readable assay rule database with an LLM that reasons over OT-2 Python code, reaching an adjusted F1 of 0.97 on a 24-protocol benchmark across five assay families and beating rules-only and LLM-only ablations across five backends; a free open-weight model ties the best proprietary one, so no paid API is required. Layer 2 fits a PCA world model to YOLO-cropped four-frame pipette trajectories; under a leakage-free leave-one-plate-out evaluation it reaches average precision 0.89 and operating-point F1 0.71 (AUROC 0.80), a deployment-faithful number that matches the live demonstration, and we characterize the small-pipette (p20) resolution limit (F1 0.47). A live demonstration on a physical OT-2 (five replicates per condition) catches planted no-tip failures deterministically and partial dispense on coloured dyes, with an always-VLM self-vote gate lifting partial-dispense recall to 5/5; transparent water is a principled limit of any front-view-only monitor, which AEGIS surfaces as low-confidence VLM reasoning rather than a wrong verdict. Cascade triage holds VLM cost near 1.63 per plate versus 10.33 for an always-VLM baseline. AEGIS is open source and, to our knowledge, the first system to unify pre-flight assay-aware validation with runtime visual monitoring for an open-source liquid handler.

  • 4 authors
·
Jul 16

From Proprietary to Open-Source: Bridging the Distribution Gap via Multi-Agent Protocol Distillation in Agentic Search

Agentic search enables large language models to solve knowledge-intensive tasks by interleaving multi-step reasoning with retrieval, yet optimizing this with outcome-based reinforcement learning (RL) provides only sparse supervision. Knowledge distillation can supply denser guidance, and advanced proprietary models with their strong reasoning capabilities are promising teachers. While distilling from proprietary models can densify this supervisory signal, conventional logit-matching is precluded by hidden logits and mismatched tokenizers, whereas raw natural language trajectory imitation transfers superficial stylistic artifacts rather than core reasoning competence. To address the heterogeneous distillation problem and bridge the distribution gap, we propose Multi-Agent Protocol Distillation (MAPD), a joint distillation and RL framework uses a structured, style-normalized protocol as an intermediate representation. An offline multi-agent system (MAS) decomposes each query, retrieves supporting evidence, repairs failed searches, and converts the resulting exploration trace into a JSON protocol containing the task type, reasoning plan, and extractive grounding facts. During training, the protocol is provided only to a privileged branch of the student policy, whose token distributions furnish a dense distillation signal alongside the sparse RL objective. Extensive evaluations across seven QA benchmarks demonstrate that MAPD consistently outperforms competitive distillation and RL, achieving average success rates of 39.4\% on Qwen3-1.7B and 44.4\% on Qwen3-4B. Crucially, the framework generalizes robustly across diverse proprietary teachers while effectively mitigating the student policy from style drift and verbosity degeneration.

  • 10 authors
·
Jul 26 2

Technical Report on the Turba Fertilizer Machine Learning Stack in Morocco

Site-specific fertilizer recommendation systems adapt nutrient advice to location, soil properties, crop type, and production targets, but scientific reuse is constrained when recommendation functions remain accessible mainly through interactive interfaces, outputs are not versioned, and trained approximations cannot be independently loaded or benchmarked. This technical report presents the Turba fertilizer machine learning stack, a three-layer open-source implementation for reproducible site-specific fertilizer recommendation in Morocco. turba-client provides programmatic access to publicly accessible site profiles, crop-specific target-yield spaces, and N, P_2O_5, and K_2O recommendation workflows; turba-data distributes analysis-ready snapshots; and turba-models packages crop-specific machine learning surrogates of recommendation outputs. The architecture links upstream retrieval, versioned analytical snapshots, reproducible cross-model benchmarking, and loadable offline surrogates while preserving the distinction between recommendation-system outputs, observed agricultural data, and model-generated predictions. The first dataset was constructed from 44,096 unique ESA WorldCereal locations. Scenario expansion across supported cereal workflows generated 132,017 crop-location recommendation requests under a medium target-yield setting. The resulting 22-variable dataset spans 10 regions, 66 provinces, and 1,149 communes. Nine regression families were evaluated under a fixed deterministic 80/20 protocol, and the current release packages five best-performing crop-specific models. The machine learning task is recommendation-function emulation rather than prediction of observed crop response. The stack provides a reproducible basis for spatial and temporal validation, uncertainty estimation, field-trial comparison, and future integration with additional data.

ROCKET-1: Master Open-World Interaction with Visual-Temporal Context Prompting

Vision-language models (VLMs) have excelled in multimodal tasks, but adapting them to embodied decision-making in open-world environments presents challenges. A key issue is the difficulty in smoothly connecting individual entities in low-level observations with abstract concepts required for planning. A common approach to address this problem is through the use of hierarchical agents, where VLMs serve as high-level reasoners that break down tasks into executable sub-tasks, typically specified using language and imagined observations. However, language often fails to effectively convey spatial information, while generating future images with sufficient accuracy remains challenging. To address these limitations, we propose visual-temporal context prompting, a novel communication protocol between VLMs and policy models. This protocol leverages object segmentation from both past and present observations to guide policy-environment interactions. Using this approach, we train ROCKET-1, a low-level policy that predicts actions based on concatenated visual observations and segmentation masks, with real-time object tracking provided by SAM-2. Our method unlocks the full potential of VLMs visual-language reasoning abilities, enabling them to solve complex creative tasks, especially those heavily reliant on spatial understanding. Experiments in Minecraft demonstrate that our approach allows agents to accomplish previously unattainable tasks, highlighting the effectiveness of visual-temporal context prompting in embodied decision-making. Codes and demos will be available on the project page: https://craftjarvis.github.io/ROCKET-1.

  • 7 authors
·
Oct 23, 2024 6

Open-MMUnlearning: Unifying Methods and Evaluation for MLLM Unlearning

As multimodal large language models (MLLMs) become more capable and widely deployed, concerns about privacy and safety have become increasingly pressing. Machine unlearning offers one approach to addressing these concerns by removing designated information from trained models while preserving unrelated capabilities. However, fragmented implementations and evaluation protocols, incomplete robustness testing, and limited understanding of metric reliability make progress in MLLM unlearning difficult to assess systematically. We introduce Open-MMUnlearning, an open-source, extensible framework that integrates target-model preparation, multimodal data processing, unlearning, and evaluation through shared interfaces and structured configurations. The framework supports five benchmarks spanning privacy, safety, and copyright, eight MLLMs from four model families, and twelve unlearning methods. Its evaluation suite jointly assesses forgetting effectiveness, retained utility, and robustness to model interventions, adversarial inputs, and membership inference attacks. Using a common evaluation protocol, we compare ten representative unlearning methods. In this comparison, GD and MIP-Editor tie for the highest overall score: GD achieves the highest Forget Quality, while MIP-Editor preserves more Model Utility. We further introduce a metric meta-evaluation protocol that tests faithfulness using models with controlled exposure to target knowledge and robustness under quantization and relearning. Among the thirteen evaluated metrics, BLEU achieves the highest aggregate reliability score. KS-Test attains the highest faithfulness AUC but performs less well on robustness. Together, the framework and these findings support reproducible comparison of MLLM unlearning methods and systematic assessment of evaluation reliability.

  • 22 authors
·
Oct 12

Toward Open Weight Models Without Risks: Separating Public and Private Capabilities in LLMs

Open-weight Large Language Models (LLMs) enable scientific progress and broad deployment. However, they make it difficult to control access to sensitive capabilities. Current practice either suppresses dangerous capabilities before release or mediates access through closed services that use specialized model variants, input/output monitors, and API permissions. The former is susceptible to jailbreaks while sacrificing capability for all users to mitigate the risks posed by a few, and the latter is fundamentally incompatible with open-weight release. In this paper, we propose Tiered Language Models (TLMs), where a single set of released weights supports multiple capability levels. In its default public configuration, a TLM behaves as a conventional LLM. A compact secret key specifies a permutation over a small parameter subset, inducing an alternative computation graph over the same weights that exposes additional capabilities. We develop a training protocol that jointly pretrains both configurations from scratch, then fine-tunes the keyed configuration on private data with regularization to preserve the public model's behavior. We pretrain 180M- and 650M-parameter TLMs and demonstrate that the keyed configuration can acquire a new language, gain instruction-following ability, and memorize private factual knowledge, whereas the public configuration exhibits none of these capabilities. Moreover, we show that our approach extends naturally to multiple hierarchical tiers. Because authorization operates on the model's weight structure rather than in the input space, the mechanism resists fine-tuning-based extraction and partial key compromise. In general, TLMs take a step toward reconciling open-weight release with selective capability control.

Open-Ended Video Game Glitch Detection with Agentic Reasoning and Temporal Grounding

Open-ended video game glitch detection aims to identify glitches in gameplay videos, describe them in natural language, and localize when they occur. Unlike conventional game glitch understanding tasks which have largely been framed as image-level recognition or closed-form question answering, this task requires reasoning about game-specific dynamics such as mechanics, physics, rendering, animation, and expected state transitions directly over continuous gameplay videos and distinguishing true glitches from unusual but valid in-game events. To support this task, we introduce VideoGlitchBench, the first benchmark for open-ended video game glitch detection with temporal localization. VideoGlitchBench contains 5,238 gameplay videos from 120 games, each annotated with detailed glitch descriptions and precise temporal spans, enabling unified evaluation of semantic understanding and temporal grounding. We further propose GliDe, an agentic framework with three key components: a game-aware contextual memory for informed reasoning, a debate-based reflector for multi-perspective glitch detection and verification, and an event-level grounding module that recovers complete glitch intervals from fragmented temporal evidence. We also design a task-specific evaluation protocol that jointly measures semantic fidelity and temporal accuracy. Experiments show that this task remains highly challenging for current multimodal models, while GliDe achieves substantially stronger performance than corresponding vanilla model baselines.

  • 6 authors
·
Apr 23

Interaction Protocol Shapes Moral Judgment in Multi-Agent Debate

As large language models (LLMs) are increasingly deployed in sensitive everyday contexts -- offering personal advice, mental health support, and moral guidance -- understanding their behavior in navigating complex moral reasoning is essential. Most evaluations study this sociotechnical alignment through single-turn prompts, but it is unclear if these findings extend to multi-turn settings, and even less clear how they depend on the interaction protocols used to coordinate agentic systems. We address this gap using LLM debate to examine deliberative dynamics and value alignment in multi-turn settings by prompting subsets of three models (GPT-4.1, Claude 3.7 Sonnet, and Gemini 2.0 Flash) to collectively assign blame in 1,000 everyday dilemmas from Reddit's ``Am I the Asshole'' community. To test order effects and assess verdict revision, we use both synchronous (parallel responses) and round-robin (sequential responses) deliberation structures, mirroring how multi-agent systems are increasingly orchestrated in practice. Our findings show striking behavioral differences. In the synchronous setting, GPT-4.1 showed strong inertia (0.6-3.1\% revision rates) while Claude 3.7 Sonnet and Gemini 2.0 Flash were far more flexible (28-41\% revision rates). Value patterns also diverged: GPT-4.1 emphasized personal autonomy and direct communication (relative to its deliberation partners), while Claude 3.7 Sonnet and Gemini 2.0 Flash prioritized empathetic dialogue. We further find that deliberation format had a strong impact on model behavior: GPT-4.1 and Gemini 2.0 Flash stood out as highly conforming relative to Claude 3.7 Sonnet, with their verdict behavior strongly shaped by order effects. We provide additional results on open-source models (DeepSeek-V3.2 and Llama 3.1).

  • 2 authors
·
Jul 13

AffordAny: Open-World 3D Affordance Grounding from Monocular RGB Images via Vision-Language-Guided Geometric Reasoning

Open-world 3D affordance grounding requires localizing functional object parts in 3D given free-form language queries. Existing methods typically assume pre-built object-centric 3D geometry and closed affordance ontologies, limiting deployment from raw RGB observations. We present AffordAny, an end-to-end framework that uses one monocular RGB image to construct large-scale text-conditioned 3D part supervision, ground affordances with a frozen vision-language model (VLM) guided decoder, and improve open-world generalization through pseudo-label self-training. Our automated pipeline produces a benchmark of 5,334 objects and 10,633 part-level samples spanning 473 categories, an order-of-magnitude increase in categorical diversity over prior work. The decoder progressively fuses frozen Cosmos-2B features with 3D geometry through spatial projection, instruction-conditioned semantic compression, and bidirectional geometry-semantics interaction. Minimal-perturbation pseudo-label self-training further adds new objects without human annotation. Under a systematic generalization protocol evaluating unseen objects, unseen categories, and unseen instruction paraphrases, our approach achieves 0.428 IoU on unseen objects and 0.315 IoU on unseen categories after self-training, with unseen-category mIoU improving by 6.3% relative (p<0.01) and an instruction sensitivity gap of only 0.105, demonstrating effectiveness and robustness of our method.

  • 6 authors
·
Aug 20

A survey of agent interoperability protocols: Model Context Protocol (MCP), Agent Communication Protocol (ACP), Agent-to-Agent Protocol (A2A), and Agent Network Protocol (ANP)

Large language model powered autonomous agents demand robust, standardized protocols to integrate tools, share contextual data, and coordinate tasks across heterogeneous systems. Ad-hoc integrations are difficult to scale, secure, and generalize across domains. This survey examines four emerging agent communication protocols: Model Context Protocol (MCP), Agent Communication Protocol (ACP), Agent-to-Agent Protocol (A2A), and Agent Network Protocol (ANP), each addressing interoperability in deployment contexts. MCP provides a JSON-RPC client-server interface for secure tool invocation and typed data exchange. ACP defines a general-purpose communication protocol over RESTful HTTP, supporting MIME-typed multipart messages and synchronous and asynchronous interactions. Its lightweight and runtime-independent design enables scalable agent invocation, while features like session management, message routing, and integration with role-based and decentralized identifiers (DIDs). A2A enables peer-to-peer task delegation using capability-based Agent Cards, supporting secure and scalable collaboration across enterprise agent workflows. ANP supports open network agent discovery and secure collaboration using W3C decentralized identifiers DIDs and JSON-LD graphs. The protocols are compared across multiple dimensions, including interaction modes, discovery mechanisms, communication patterns, and security models. Based on the comparative analysis, a phased adoption roadmap is proposed: beginning with MCP for tool access, followed by ACP for structured, multimodal messaging session-aware interaction and both online and offline agent discovery across scalable, HTTP-based deployments A2A for collaborative task execution, and extending to ANP for decentralized agent marketplaces. This work provides a comprehensive foundation for designing secure, interoperable, and scalable ecosystems of LLM-powered agents.

  • 4 authors
·
May 4, 2025

Securing the Model Context Protocol (MCP): Risks, Controls, and Governance

The Model Context Protocol (MCP) replaces static, developer-controlled API integrations with more dynamic, user-driven agent systems, which also introduces new security risks. As MCP adoption grows across community servers and major platforms, organizations encounter threats that existing AI governance frameworks (such as NIST AI RMF and ISO/IEC 42001) do not yet cover in detail. We focus on three types of adversaries that take advantage of MCP s flexibility: content-injection attackers that embed malicious instructions into otherwise legitimate data; supply-chain attackers who distribute compromised servers; and agents who become unintentional adversaries by over-stepping their role. Based on early incidents and proof-of-concept attacks, we describe how MCP can increase the attack surface through data-driven exfiltration, tool poisoning, and cross-system privilege escalation. In response, we propose a set of practical controls, including per-user authentication with scoped authorization, provenance tracking across agent workflows, containerized sandboxing with input/output checks, inline policy enforcement with DLP and anomaly detection, and centralized governance using private registries or gateway layers. The aim is to help organizations ensure that unvetted code does not run outside a sandbox, tools are not used beyond their intended scope, data exfiltration attempts are detectable, and actions can be audited end-to-end. We close by outlining open research questions around verifiable registries, formal methods for these dynamic systems, and privacy-preserving agent operations.

  • 3 authors
·
Nov 24, 2025

Fully Open Meditron: An Auditable Pipeline for Clinical LLMs

Clinical decision support systems (CDSS) require scrutable, auditable pipelines that enable rigorous, reproducible validation. Yet current LLM-based CDSS remain largely opaque. Most "open" models are open-weight only, releasing parameters while withholding the data provenance, curation procedures, and generation pipelines that determine model behavior. Fully Open (FO) models, which expose the complete training stack end-to-end, do not currently exist in medicine. We introduce Fully Open Meditron, the first fully open pipeline for building LLM-CDSS, comprising a clinician-audited training corpus, a reproducible data construction and training framework, and a use-aligned evaluation protocol. The corpus unifies eight public medical QA datasets into a normalized conversational format and expands coverage with three clinician-vetted synthetic extensions: exam-style QA, guideline-grounded QA derived from 46,469 clinical practice guidelines, and clinical vignettes. The pipeline enforces system-wide decontamination, gold-label resampling of teacher generations, and end-to-end validation by a four-physician panel. We evaluate using an LLM-as-a-judge protocol over expert-written clinical vignettes, calibrated against 204 human raters. We apply the recipe to five FO base models (Apertus-70B/8B-Instruct, OLMo-2-32B-SFT, EuroLLM-22B/9B-Instruct). All MeditronFO variants are preferred over their bases. Apertus-70B-MeditronFO improves +6.6 points over its base (47.2% to 53.8%) on aggregate medical benchmarks, establishing a new FO SoTA. Gemma-3-27B-MeditronFO is preferred over MedGemma in 58.6% of LLM-as-a-judge comparisons and outperforms it on HealthBench (58% vs 55.9%). These results show that fully open pipelines can achieve state-of-the-art domain-specific performance without sacrificing auditability or reproducibility.

CodeGraph: Open-Taxonomy Knowledge Graph for Source Code with Wikidata Grounding

Public software repositories, like GitHub and Software Heritage Archive, store billions of files, yet extracting their implicit engineering knowledge ---i.e., the algorithms they implement, the paradigms they follow, the patterns they instantiate, and the application domains they serve--- remains challenging, as current tools are constrained to syntactic and token-level analysis. We present a pipeline for building an open-taxonomy semantic annotation of source code using a code-specialised Large Language Model. The extracted entities are grounded in Wikidata through a three-stage linking procedure: a deterministic SPARQL stage handles unambiguous entities, a Deep Research Agent resolves the residual long tail, and a hierarchy-rollup stage imports the parent-of closure of each resolved Wikidata identifier. The resulting annotations are materialised as a source-code-specific open-taxonomy knowledge graph. We further introduce a calibrated quality-assurance protocol that quantifies annotation precision by combining a small human gold set with an LLM-as-a-judge filter. We applied our pipeline to the 167 million files of the Stack-Edu corpus, creating the first known large-scale open-taxonomy knowledge graph for source code. Our graph, named CodeGraph, contains approximately 158 million nodes, which include around 145 million files, about 63,000 extracted concept entities (such as algorithms, paradigms, design patterns, and application domains), and roughly 19,800 grounded Wikidata entities. Furthermore, CodeGraph features approximately 1 billion typed edges that connect files to their respective concepts, link these concepts to their grounded Wikidata identifiers, and relate them to their parent categories, covering 14 programming languages.

  • 5 authors
·
Sep 23 2

AU-Harness: An Open-Source Toolkit for Holistic Evaluation of Audio LLMs

Large Audio Language Models (LALMs) are rapidly advancing, but evaluating them remains challenging due to inefficient toolkits that limit fair comparison and systematic assessment. Current frameworks suffer from three critical issues: slow processing that bottlenecks large-scale studies, inconsistent prompting that hurts reproducibility, and narrow task coverage that misses important audio reasoning capabilities. We introduce AU-Harness, an efficient and comprehensive evaluation framework for LALMs. Our system achieves a speedup of up to 127% over existing toolkits through optimized batch processing and parallel execution, enabling large-scale evaluations previously impractical. We provide standardized prompting protocols and flexible configurations for fair model comparison across diverse scenarios. Additionally, we introduce two new evaluation categories: LLM-Adaptive Diarization for temporal audio understanding and Spoken Language Reasoning for complex audio-based cognitive tasks. Through evaluation across 380+ tasks, we reveal significant gaps in current LALMs, particularly in temporal understanding and complex spoken language reasoning tasks. Our findings also highlight a lack of standardization in instruction modality existent across audio benchmarks, which can lead up performance differences up to 9.5 absolute points on the challenging complex instruction following downstream tasks. AU-Harness provides both practical evaluation tools and insights into model limitations, advancing systematic LALM development.

  • 8 authors
·
Sep 9, 2025 3

Revealing the True Cost of Locally Differentially Private Protocols: An Auditing Perspective

While the existing literature on Differential Privacy (DP) auditing predominantly focuses on the centralized model (e.g., in auditing the DP-SGD algorithm), we advocate for extending this approach to audit Local DP (LDP). To achieve this, we introduce the LDP-Auditor framework for empirically estimating the privacy loss of locally differentially private mechanisms. This approach leverages recent advances in designing privacy attacks against LDP frequency estimation protocols. More precisely, through the analysis of numerous state-of-the-art LDP protocols, we extensively explore the factors influencing the privacy audit, such as the impact of different encoding and perturbation functions. Additionally, we investigate the influence of the domain size and the theoretical privacy loss parameters ε and δ on local privacy estimation. In-depth case studies are also conducted to explore specific aspects of LDP auditing, including distinguishability attacks on LDP protocols for longitudinal studies and multidimensional data. Finally, we present a notable achievement of our LDP-Auditor framework, which is the discovery of a bug in a state-of-the-art LDP Python package. Overall, our LDP-Auditor framework as well as our study offer valuable insights into the sources of randomness and information loss in LDP protocols. These contributions collectively provide a realistic understanding of the local privacy loss, which can help practitioners in selecting the LDP mechanism and privacy parameters that best align with their specific requirements. We open-sourced LDP-Auditor in https://github.com/hharcolezi/ldp-audit.

  • 2 authors
·
Sep 4, 2023

BioProBench: Comprehensive Dataset and Benchmark in Biological Protocol Understanding and Reasoning

Biological protocols are fundamental to reproducible and safe life science research. While LLMs excel on general tasks, their systematic evaluation on these highly specialized, accuracy-critical, and inherently procedural texts remains limited. In this work, we present BioProBench, the first large-scale, integrated multi-task benchmark for biological protocol understanding and reasoning. While limited benchmarks have touched upon specific aspects like protocol QA, BioProBench provides a comprehensive suite of five core tasks: Protocol Question Answering, Step Ordering, Error Correction, Protocol Generation, and Protocol Reasoning, enabling a holistic evaluation of LLMs on procedural biological texts. Built upon 27K original protocols, it yields nearly 556K high-quality structured instances. We evaluate 12 mainstream open/closed-source LLMs on BioProBench. Experimental results reveal that while top models preform well on surface understanding tasks, struggle significantly with deep reasoning and structured generation tasks like ordering and generation. Furthermore, model comparisons reveal diverse performance: certain open-source models approach closed-source levels on some tasks, yet bio-specific small models lag behind general LLMs, indicating limitations on complex procedural content. Overall, our findings underscore that procedural reasoning within biological protocols represents a significant challenge for current LLMs. BioProBench serves as a standardized framework to diagnose these specific limitations and guide the development of AI systems better equipped for safely automating complex scientific procedures. The code and data are available at: https://github.com/YuyangSunshine/bioprotocolbench and https://huggingface.co/datasets/GreatCaptainNemo/BioProBench.

  • 5 authors
·
May 11, 2025

MixtureVitae: Open Web-Scale Pretraining Dataset With High Quality Instruction and Reasoning Data Built from Permissive-First Text Sources

We present MixtureVitae, an open-access pretraining corpus built to minimize legal risk while providing strong model performance. MixtureVitae follows a risk-mitigated sourcing strategy that combines public-domain and permissively licensed text (e.g., CC-BY/Apache) with carefully justified low-risk additions (e.g., government works and EU TDM-eligible sources), alongside targeted instruction, reasoning and synthetic data with documented provenance. We detail a transparent, multi-stage pipeline for license-aware filtering, safety and quality screening, and domain-aware mixing, and we release the dataset and curation recipes to support reproducible research. In controlled experiments using the open-sci-ref training protocol (fixed architectures at 130M/400M/1.3B/1.7B parameters; training budgets of 50B and 300B tokens), models trained on MixtureVitae consistently outperform other permissive datasets across a suite of standard benchmarks, and at the 1.7B/300B setting they surpass FineWeb-Edu and approach DCLM in the later stages of training. Performance is particularly strong on math/code and competitive on QA tasks. These results demonstrate that permissive-first, risk-mitigated data provides a practical and legally mitigated foundation for training capable LLMs, reducing reliance on indiscriminate web scraping without sacrificing competitiveness. Code: https://github.com/ontocord/mixturevitae

ontocord Ontocord
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Sep 29, 2025 3

ToolRosetta: Bridging Open-Source Repositories and Large Language Model Agents through Automated Tool Standardization

Reusing and invoking existing code remains costly and unreliable, as most practical tools are embedded in heterogeneous code repositories and lack standardized, executable interfaces. Although large language models (LLMs) and Model Context Protocol (MCP)-based tool invocation frameworks enable natural language task execution, current approaches rely heavily on manual tool curation and standardization, which fundamentally limits scalability. In this paper, we propose ToolRosetta, a unified framework that automatically translates open-source code repositories and APIs into MCP-compatible tools that can be reliably invoked by LLMs. Given a user task, ToolRosetta autonomously plans toolchains, identifies relevant codebases, and converts them into executable MCP services, enabling end-to-end task completion with minimal human intervention. In addition, ToolRosetta incorporates a security inspection layer to mitigate risks inherent in executing arbitrary code. Extensive experiments across diverse scientific domains demonstrate that ToolRosetta can automatically standardize a large number of open-source tools and reduce the human effort required for code reproduction and deployment. Notably, by seamlessly leveraging specialized open-source tools, ToolRosetta-powered agents consistently improve task completion performance compared to commercial LLMs and existing agent systems.

  • 12 authors
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Mar 10 2

RIDE: An Open Dataset and Benchmark for Train Delay Prediction

Train delay prediction is an important problem for both passengers and railway operators, yet progress in the field remains difficult to assess due to the lack of standardized datasets, prediction targets, and evaluation protocols. To address this gap, we introduce RIDE, an open dataset and benchmark for train delay prediction built at nationwide scale over the Belgian railway network. RIDE covers 94.5M train events, 3.6M journeys, and 35.7M weather records from 2023 to 2025. It is organized as a layered data pipeline from raw railway and weather sources to two public releases: a reusable intermediate relational dataset and model-ready benchmark datasets. The benchmark standardizes the prediction task and the training and testing data. It also provides a unified evaluation protocol that supports direct comparison across models. Using this framework, we provide the first comprehensive comparative evaluation of non-learning, statistical learning, and deep learning models. We show that learning-based methods clearly outperform non-learning models, with graph neural networks achieving the best mean performance, while the strongest learning-based models remain relatively close to one another. Beyond aggregate mean absolute error (MAE) and root mean squared error (RMSE), the framework also provides breakdowns by prediction horizon and delay change, enabling more detailed analysis of model behavior across forecasting regimes.

  • 5 authors
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Jun 2

Occamy-1.0: Open Pareto-frontier 35B Intelligence for Co-work

Co-work agents execute complex workflows that combine information gathering, tool use, coding, and file manipulation across many model invocations. Because cost and latency accumulate over the full episode, their practical value depends not only on peak capability but also on how efficiently that capability is delivered. Yet many steps in everyday work emphasize state tracking, coordination, recovery, and follow-through rather than frontier-scale reasoning. We present Occamy-1.0, a cost-efficient co-work model obtained by further training the post-trained Qwen3.6-35B-A3B checkpoint. We construct execution-grounded data and environments, capture replayable long-horizon trajectories across multiple harnesses, and use staged post-training to develop and consolidate complementary execution capabilities. Across a broad suite of co-work benchmarks, Occamy-1.0 is consistently among the strongest comparably sized models and remains competitive with substantially larger frontier systems on several tasks. Under our stated evaluation and pricing protocol, its aggregate performance across four representative benchmarks places it at the low-cost knee of the observed cost--performance Pareto frontier. Supporting evaluations in tool calling, coding, and instruction following further show that this specialization preserves broad agentic capability. We release the model weights and a subset of the training data to support research on practical co-work agents and agentic post-training.

Accio-Lab Accio
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Sep 3 5

Narrowing the Knowledge Evaluation Gap: Open-Domain Question Answering with Multi-Granularity Answers

Factual questions typically can be answered correctly at different levels of granularity. For example, both ``August 4, 1961'' and ``1961'' are correct answers to the question ``When was Barack Obama born?''. Standard question answering (QA) evaluation protocols, however, do not explicitly take this into account and compare a predicted answer against answers of a single granularity level. In this work, we propose GRANOLA QA, a novel evaluation setting where a predicted answer is evaluated in terms of accuracy and informativeness against a set of multi-granularity answers. We present a simple methodology for enriching existing datasets with multi-granularity answers, and create GRANOLA-EQ, a multi-granularity version of the EntityQuestions dataset. We evaluate a range of decoding methods on GRANOLA-EQ, including a new algorithm, called Decoding with Response Aggregation (DRAG), that is geared towards aligning the response granularity with the model's uncertainty. Our experiments show that large language models with standard decoding tend to generate specific answers, which are often incorrect. In contrast, when evaluated on multi-granularity answers, DRAG yields a nearly 20 point increase in accuracy on average, which further increases for rare entities. Overall, this reveals that standard evaluation and decoding schemes may significantly underestimate the knowledge encapsulated in LMs.

  • 3 authors
·
Jan 9, 2024

Arkios: An Open Bilingual English-Nepali Language Model Trained From Scratch, with a Devanagari-Aware Tokenizer

We present Arkios, a 1.04B-parameter dense transformer pretrained from scratch on 150B tokens of bilingual English-Nepali text, using a custom single-file C/CUDA training stack and a Devanagari-aware byte-level BPE tokenizer built for this project. On ARC-Easy and ARC-Challenge, Arkios exceeds three comparably sized open models (Pythia-1.4B, TinyLlama-1.1B, OLMo-1B) despite an order of magnitude fewer training tokens, likely aided by a match between our educational-web-text pretraining data and ARC's grade-school-science format rather than a general capability advantage. We report full evaluation results under standard protocols, including a correction to an earlier partial-sample estimate, and findings specific to evaluating small models in a low-resource language: the standard multiple-choice-letter prompt format used by common evaluation harnesses places this model at chance on Nepali reading comprehension, and simultaneously at chance on English in the same format, which would lead a naive benchmark run to conclude the model has no Nepali ability when in fact it does. Concretely, both languages score at chance in the letter-choice format (0.240 Nepali, 0.236 English, against a chance baseline of 0.250), while scoring the answer text directly reveals genuine, English-favoring comprehension (0.306 Nepali, 0.387 English). We describe a manifest-conditioned tool-use contract introduced during instruction tuning, where tool calls are permitted only when a tool manifest is declared in context and suppressed otherwise, and report where that contract holds and where it does not. We release both the base and instruction-tuned model weights under Apache-2.0. The training code and a small privately-sourced portion of the Nepali pretraining corpus are not released; everything needed to reproduce the reported numbers from the released weights is included here.

  • 3 authors
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Aug 29

Lessons and Open Questions from a Unified Study of Camera-Trap Species Recognition Over Time

Camera traps are vital for large-scale biodiversity monitoring, yet accurate automated analysis remains challenging due to diverse deployment environments. While the computer vision community has mostly framed this challenge as cross-domain generalization, this perspective overlooks a primary challenge faced by ecological practitioners: maintaining reliable recognition at the fixed site over time, where the dynamic nature of ecosystems introduces profound temporal shifts in both background and animal distributions. To bridge this gap, we present the first unified study of camera-trap species recognition over time. We introduce a realistic benchmark comprising 546 camera traps with a streaming protocol that evaluates models over chronologically ordered intervals. Our end-user-centric study yields four key findings. (1) Biological foundation models (e.g., BioCLIP 2) underperform at numerous sites even in initial intervals, underscoring the necessity of site-specific adaptation. (2) Adaptation is challenging under realistic evaluation: when models are updated using past data and evaluated on future intervals (mirrors real deployment lifecycles), naive adaptation can even degrade below zero-shot performance. (3) We identify two drivers of this difficulty: severe class imbalance and pronounced temporal shift in both species distribution and backgrounds between consecutive intervals. (4) We find that effective integration of model-update and post-processing techniques can largely improve accuracy, though a gap from the upper bounds remains. Finally, we highlight critical open questions, such as predicting when zero-shot models will succeed at a new site and determining whether/when model updates are necessary. Our benchmark and analysis provide actionable deployment guidelines for ecological practitioners while establishing new directions for future research in vision and machine learning.

  • 10 authors
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Jul 22

Open ultrasound foundation model for robust segmentation and clinical measurement across heterogeneous settings

Ultrasound is the most widely deployed imaging modality worldwide, yet clinical AI remains fragmented into narrow single-task models that fail when device, operator, or anatomy changes. Here we present SonoCorpus, an open resource unifying 456,963 images and 1,626,085 expert masks from 53 public datasets spanning 24 clinical applications and 17 countries, and SonoBase, an interactive segmentation foundation model pretrained on it. Across fifteen evaluation datasets introducing new organs, devices, operators, and geographies, SonoBase outperforms SAM2, MedSAM2, and the concept-promptable MedSAM3 on every dataset and matches per-dataset specialist models trained on the same data; on fully external data it exceeds the accuracy these baselines achieve on their own in-distribution benchmarks. Ejection fraction derived from its segmentations falls within inter-observer variability (6.63\% error), with fewer misclassifications at the defibrillator-candidacy threshold than either promptable baseline (13\% versus 18--42\%); fetal head-circumference (1.81~mm) and gestational-age (1.2 days) errors fall below inter-observer variability. Where a baseline fails outright, one in four test cases, SonoBase recovers a usable segmentation in 81\% of them, including on handheld probes operated by minimally trained users in two low- and middle-income countries (Sierra Leone and Tanzania). Five labeled examples can help the model adapt to a new setting, and the identical training protocol transfers well to newer models such as SAM3, locating the advantage in ultrasound-specific pretraining rather than any single architecture. To ensure reproducibility and enable the community to build on SonoBase as a platform, we release all checkpoints, optimizer states, data-split indices, deduplication hashes, and starter code.

  • 7 authors
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Sep 15

EarlyDx: An Admission-Anchored Benchmark for Open-Ended Generation of Evidence-Supported ED-Encounter Diagnoses

Clinical diagnosis at hospital admission must be made rapidly from limited, incomplete evidence. Existing diagnosis-prediction benchmarks are poorly suited to this setting: they restrict prediction to closed code sets, exclude free-text notes, and supervise with discharge diagnoses that incorporate the full inpatient course. We introduce EarlyDx, a large-scale benchmark for open-ended early diagnosis, built from 154,834 emergency department encounters in MIMIC-IV. Each encounter is restricted to records available at admission time t_0 and supervised by the diagnoses recorded during the ED encounter rather than at discharge. An LLM auditor further verifies every free-text label as supported, partially supported, or unsupported by that evidence; the primary evaluation scores only fully supported labels. Under a semantic LLM-as-judge protocol, no evaluated system --- frontier general, medical-specialized, or in-domain post-trained --- synthesizes admission-time evidence reliably. Zero-shot models score largely by extraction, recovering only 3-31% of diagnoses that must be inferred rather than read from the record; post-training raises inference-dependent recall to 56%, but a sizeable margin remains, and on time-critical conditions no system attains a clinician's balance of sensitivity and precision. We release the full construction and evaluation pipeline at here.

  • 8 authors
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Jul 29

BARS-CTR: Open Benchmarking for Click-Through Rate Prediction

Click-through rate (CTR) prediction is a critical task for many applications, as its accuracy has a direct impact on user experience and platform revenue. In recent years, CTR prediction has been widely studied in both academia and industry, resulting in a wide variety of CTR prediction models. Unfortunately, there is still a lack of standardized benchmarks and uniform evaluation protocols for CTR prediction research. This leads to non-reproducible or even inconsistent experimental results among existing studies, which largely limits the practical value and potential impact of their research. In this work, we aim to perform open benchmarking for CTR prediction and present a rigorous comparison of different models in a reproducible manner. To this end, we ran over 7,000 experiments for more than 12,000 GPU hours in total to re-evaluate 24 existing models on multiple datasets and settings. Surprisingly, our experiments show that with sufficient hyper-parameter search and model tuning, many deep models have smaller differences than expected. The results also reveal that making real progress on the modeling of CTR prediction is indeed a very challenging research task. We believe that our benchmarking work could not only allow researchers to gauge the effectiveness of new models conveniently but also make them fairly compare with the state of the arts. We have publicly released the benchmarking code, evaluation protocols, and hyper-parameter settings of our work to promote reproducible research in this field.

  • 5 authors
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Sep 12, 2020

A Survey on Security and Privacy Protocols for Cognitive Wireless Sensor Networks

Wireless sensor networks have emerged as an important and new area in wireless and mobile computing research because of their numerous potential applications that range from indoor deployment scenarios in home and office to outdoor deployment in adversary's territory in tactical battleground. Since in many WSN applications, lives and livelihoods may depend on the timeliness and correctness of sensor data obtained from dispersed sensor nodes, these networks must be secured to prevent any possible attacks that may be launched on them. Security is, therefore, an important issue in WSNs. However, this issue becomes even more critical in cognitive wireless sensor networks, a type of WSN in which the sensor nodes have the capabilities of changing their transmission and reception parameters according to the radio environment under which they operate in order to achieve reliable and efficient communication and optimum utilization of the network resources. This survey paper presents a comprehensive discussion on various security issues in CWSNs by identifying numerous security threats in these networks and defense mechanisms to counter these vulnerabilities. Various types of attacks on CWSNs are categorized under different classes based on their natures and tragets, and corresponding to each attack class, appropriate security mechanisms are presented. The paper also identifies some open problems in this emerging area of wireless networking.

  • 1 authors
·
Aug 3, 2013

From Prompt Injections to Protocol Exploits: Threats in LLM-Powered AI Agents Workflows

Autonomous AI agents powered by large language models (LLMs) with structured function-calling interfaces have dramatically expanded capabilities for real-time data retrieval, complex computation, and multi-step orchestration. Yet, the explosive proliferation of plugins, connectors, and inter-agent protocols has outpaced discovery mechanisms and security practices, resulting in brittle integrations vulnerable to diverse threats. In this survey, we introduce the first unified, end-to-end threat model for LLM-agent ecosystems, spanning host-to-tool and agent-to-agent communications, formalize adversary capabilities and attacker objectives, and catalog over thirty attack techniques. Specifically, we organized the threat model into four domains: Input Manipulation (e.g., prompt injections, long-context hijacks, multimodal adversarial inputs), Model Compromise (e.g., prompt- and parameter-level backdoors, composite and encrypted multi-backdoors, poisoning strategies), System and Privacy Attacks (e.g., speculative side-channels, membership inference, retrieval poisoning, social-engineering simulations), and Protocol Vulnerabilities (e.g., exploits in Model Context Protocol (MCP), Agent Communication Protocol (ACP), Agent Network Protocol (ANP), and Agent-to-Agent (A2A) protocol). For each category, we review representative scenarios, assess real-world feasibility, and evaluate existing defenses. Building on our threat taxonomy, we identify key open challenges and future research directions, such as securing MCP deployments through dynamic trust management and cryptographic provenance tracking; designing and hardening Agentic Web Interfaces; and achieving resilience in multi-agent and federated environments. Our work provides a comprehensive reference to guide the design of robust defense mechanisms and establish best practices for resilient LLM-agent workflows.

  • 5 authors
·
Jun 29, 2025

Code2MCP: A Multi-Agent Framework for Automated Transformation of Code Repositories into Model Context Protocol Services

The proliferation of Large Language Models (LLMs) has created a significant integration challenge in the AI agent ecosystem, often called the "N times M problem," where N models require custom integrations for M tools. This fragmentation stifles innovation and creates substantial development overhead. While the Model Context Protocol (MCP) has emerged as a standard to resolve this, its adoption is hindered by the manual effort required to convert the vast universe of existing software into MCP-compliant services. This is especially true for the millions of open-source repositories on GitHub, the world's largest collection of functional code. This paper introduces Code2MCP, a highly automated, agentic framework designed to transform any GitHub repository into a functional MCP service with minimal human intervention. Our system employs a multi-stage workflow that automates the entire process, from code analysis and environment configuration to service generation and deployment. A key innovation of our framework is an LLM-driven, closed-loop "Run--Review--Fix" cycle, which enables the system to autonomously debug and repair the code it generates. Code2MCP produces not only deployable services but also comprehensive technical documentation, acting as a catalyst to accelerate the MCP ecosystem by systematically unlocking the world's largest open-source code repository and automating the critical last mile of tool integration. The code is open-sourced at https://github.com/DEFENSE-SEU/MCP-Github-Agent.

  • 6 authors
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Sep 7, 2025 1

Naver-News-KO: A Korean News Summarization Dataset for Open-Source Fine-Tuning of Summarization Models

We release Naver-News-KO, a Korean news summarization dataset of 27,400 (document, summary) pairs collected from Naver News over a ten-day window in July 2022 across two categories (Economy and IT/Science; 77/23 split), with train/validation/test partitions of 22,194 / 2,466 / 2,740 and a mean per-record document-to-summary character-compression ratio of 6.03x. The dataset has been publicly hosted on the Hugging Face Hub since January 2023 and, as of May 2026, receives approximately 33,000 downloads per month; community-maintained Korean summarization models fine-tuned on it include Gemma-2B-ko and Gemma2-9B variants. This technical report (i) documents the collection protocol, the column schema, and the split construction, (ii) reports corpus-level statistics (length distributions, compression ratio, and a measured 16.8% near-duplicate title-Jaccard overlap between test and train that users should be aware of), (iii) positions the resource against other open Korean summarization corpora, (iv) provides a Lead-3 extractive reference point (ROUGE-1 55.1, ROUGE-L 50.6) and two reproducible fine-tuned baselines -- KoBART (R-1 56.6, BERTScore-F1 81.5) and Gemma-2B-ko with LoRA (R-1 55.3, BERTScore-F1 78.3) -- with release-time training scripts, and (v) clarifies the licensing and intended-use scope of the resource. The goal is to provide a citable reference for downstream work that already uses this dataset, not to propose a new benchmark.

  • 1 authors
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May 11

JarvisHub: An Open Harness for Canvas-Native Multimodal Creative Agents

Creative AI is moving from single-step asset generation toward long-horizon multimodal production. Although recent generative models can synthesize high-quality images, videos, audio clips, UI elements, storyboards, slides, and other creative assets, real-world creative work requires more than isolated prompt-output interactions. It involves references, drafts, alternatives, edits, failed attempts, version relations, tool actions, evaluation signals, and human feedback, which together form an evolving project state. Existing prompt-based, chat-based, and node-based generation systems only partially support this state, as they often discard intermediate context, rely on linear conversations, or require manually specified workflows. Recent commercial systems indicate a shift toward agent-assisted creative production, but their closed architectures make it difficult to study how agents represent context, choose tools, revise artifacts, recover from failures, and maintain consistency over time. To address this gap, we introduce JarvisHub, a canvas-native creative agent harness for long-horizon multimodal creation. JarvisHub treats an editable canvas as the user workspace, the agent's external memory, action space, and shared project state, representing multimodal artifacts, dependencies, versions, and feedback as typed canvas nodes and links. Through a three-layer architecture of canvas state, protocol bridge, and agent runtime, JarvisHub enables agents to act within an inspectable and editable creative state. This design moves creative agents beyond isolated tool use toward sustained, human-steerable creative automation, where agents can progressively plan, generate, revise, and organize multimodal projects while users remain able to inspect, guide, and intervene throughout the process.

  • 26 authors
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Jul 25 2

Open Vocabulary Domain Unlearning

Vision-Language Models (VLMs) exhibit remarkable zero-shot generalization, yet they often encode unwanted or hazardous stylistic domains such as idealized textbook diagrams in medical AI or cartoon vehicles in autonomous driving. Approximate Domain Unlearning (ADU) aims to selectively erase a model's recognition of a target visual domain while preserving accuracy on the remaining domains. However, existing ADU methods operate under a flawed closed-vocabulary assumption: they evaluate unlearning solely on the specific object classes seen during the unlearning fine-tuning phase. Consequently, these methods do not unlearn the domain itself; they merely overfit to seen class-domain pairs, leaving the domain easily recognizable for unseen classes and providing a false sense of removal. We argue that true domain erasure must be class-agnostic. To address this, we formalize Open-Vocabulary Domain Unlearning (OVDU), a rigorous protocol that mandates domain forgetting must transfer to held-out classes. To solve the OVDU challenge, we propose a surgical parameter-editing framework. First, a Fisher Information mask isolates domain-sensitive weights, mathematically protecting foundational zero-shot generalization. Second, our Targeted Manifold Scattering (TMS) objective uses preference-based mining to locally scatter the forget domain's stylistic geometry. Evaluated across PACS, OfficeHome, and DomainNet, our method vastly improves open-vocabulary generalization over existing baselines. Crucially, it delivers exceptional sample efficiency, outperforming peak 8-shot baseline results with only 4 shots.

  • 4 authors
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Sep 24

A Survey of LLM-Driven AI Agent Communication: Protocols, Security Risks, and Defense Countermeasures

In recent years, Large-Language-Model-driven AI agents have exhibited unprecedented intelligence, flexibility, and adaptability, and are rapidly changing human production and lifestyle. Nowadays, agents are undergoing a new round of evolution. They no longer act as an isolated island like LLMs. Instead, they start to communicate with diverse external entities, such as other agents and tools, to collectively perform more complex tasks. Under this trend, agent communication is regarded as a foundational pillar of the future AI ecosystem, and many organizations intensively begin to design related communication protocols (e.g., Anthropic's MCP and Google's A2A) within the recent few months. However, this new field exposes significant security hazard, which can cause severe damage to real-world scenarios. To help researchers to quickly figure out this promising topic and benefit the future agent communication development, this paper presents a comprehensive survey of agent communication security. More precisely, we first present a clear definition of agent communication and categorize the entire lifecyle of agent communication into three stages: user-agent interaction, agent-agent communication, and agent-environment communication. Next, for each communication phase, we dissect related protocols and analyze its security risks according to the communication characteristics. Then, we summarize and outlook on the possible defense countermeasures for each risk. Finally, we discuss open issues and future directions in this promising research field.

  • 16 authors
·
Jun 24, 2025

Open Logo Detection Challenge

Existing logo detection benchmarks consider artificial deployment scenarios by assuming that large training data with fine-grained bounding box annotations for each class are available for model training. Such assumptions are often invalid in realistic logo detection scenarios where new logo classes come progressively and require to be detected with little or none budget for exhaustively labelling fine-grained training data for every new class. Existing benchmarks are thus unable to evaluate the true performance of a logo detection method in realistic and open deployments. In this work, we introduce a more realistic and challenging logo detection setting, called Open Logo Detection. Specifically, this new setting assumes fine-grained labelling only on a small proportion of logo classes whilst the remaining classes have no labelled training data to simulate the open deployment. We further create an open logo detection benchmark, called OpenLogo,to promote the investigation of this new challenge. OpenLogo contains 27,083 images from 352 logo classes, built by aggregating/refining 7 existing datasets and establishing an open logo detection evaluation protocol. To address this challenge, we propose a Context Adversarial Learning (CAL) approach to synthesising training data with coherent logo instance appearance against diverse background context for enabling more effective optimisation of contemporary deep learning detection models. Experiments show the performance advantage of CAL over existing state-of-the-art alternative methods on the more realistic and challenging OpenLogo benchmark.

  • 3 authors
·
Sep 26, 2018

MCP-Universe: Benchmarking Large Language Models with Real-World Model Context Protocol Servers

The Model Context Protocol has emerged as a transformative standard for connecting large language models to external data sources and tools, rapidly gaining adoption across major AI providers and development platforms. However, existing benchmarks are overly simplistic and fail to capture real application challenges such as long-horizon reasoning and large, unfamiliar tool spaces. To address this critical gap, we introduce MCP-Universe, the first comprehensive benchmark specifically designed to evaluate LLMs in realistic and hard tasks through interaction with real-world MCP servers. Our benchmark encompasses 6 core domains spanning 11 different MCP servers: Location Navigation, Repository Management, Financial Analysis, 3D Design, Browser Automation, and Web Searching. To ensure rigorous evaluation, we implement execution-based evaluators, including format evaluators for agent format compliance, static evaluators for time-invariant content matching, and dynamic evaluators that automatically retrieve real-time ground truth for temporally sensitive tasks. Through extensive evaluation of leading LLMs, we find that even SOTA models such as GPT-5 (43.72%), Grok-4 (33.33%) and Claude-4.0-Sonnet (29.44%) exhibit significant performance limitations. In addition, our benchmark poses a significant long-context challenge for LLM agents, as the number of input tokens increases rapidly with the number of interaction steps. Moreover, it introduces an unknown-tools challenge, as LLM agents often lack familiarity with the precise usage of the MCP servers. Notably, enterprise-level agents like Cursor cannot achieve better performance than standard ReAct frameworks. Beyond evaluation, we open-source our extensible evaluation framework with UI support, enabling researchers and practitioners to seamlessly integrate new agents and MCP servers while fostering innovation in the rapidly evolving MCP ecosystem.

Model Context Protocol (MCP) at First Glance: Studying the Security and Maintainability of MCP Servers

Although Foundation Models (FMs), such as GPT-4, are increasingly used in domains like finance and software engineering, reliance on textual interfaces limits these models' real-world interaction. To address this, FM providers introduced tool calling-triggering a proliferation of frameworks with distinct tool interfaces. In late 2024, Anthropic introduced the Model Context Protocol (MCP) to standardize this tool ecosystem, which has become the de facto standard with over eight million weekly SDK downloads. Despite its adoption, MCP's AI-driven, non-deterministic control flow introduces new risks to sustainability, security, and maintainability, warranting closer examination. Towards this end, we present the first large-scale empirical study of MCP servers. Using state-of-the-art health metrics and a hybrid analysis pipeline, combining a general-purpose static analysis tool with an MCP-specific scanner, we evaluate 1,899 open-source MCP servers to assess their health, security, and maintainability. Despite MCP servers demonstrating strong health metrics, we identify eight distinct vulnerabilities - only three overlapping with traditional software vulnerabilities. Additionally, 7.2% of servers contain general vulnerabilities and 5.5% exhibit MCP-specific tool poisoning. Regarding maintainability, while 66% exhibit code smells, 14.4% contain nine bug patterns overlapping with traditional open-source software projects. These findings highlight the need for MCP-specific vulnerability detection techniques while reaffirming the value of traditional analysis and refactoring practices.

  • 6 authors
·
Jun 16, 2025

SkinFlow: Efficient Information Transmission for Open Dermatological Diagnosis via Dynamic Visual Encoding and Staged RL

General-purpose Large Vision-Language Models (LVLMs), despite their massive scale, often falter in dermatology due to "diffuse attention" - the inability to disentangle subtle pathological lesions from background noise. In this paper, we challenge the assumption that parameter scaling is the only path to medical precision. We introduce SkinFlow, a framework that treats diagnosis as an optimization of visual information transmission efficiency. Our approach utilizes a Virtual-Width Dynamic Vision Encoder (DVE) to "unfold" complex pathological manifolds without physical parameter expansion, coupled with a two-stage Reinforcement Learning strategy. This strategy sequentially aligns explicit medical descriptions (Stage I) and reconstructs implicit diagnostic textures (Stage II) within a constrained semantic space. Furthermore, we propose a clinically grounded evaluation protocol that prioritizes diagnostic safety and hierarchical relevance over rigid label matching. Empirical results are compelling: our 7B model establishes a new state-of-the-art on the Fitzpatrick17k benchmark, achieving a +12.06% gain in Top-1 accuracy and a +28.57% boost in Top-6 accuracy over the massive general-purpose models (e.g., Qwen3VL-235B and GPT-5.2). These findings demonstrate that optimizing geometric capacity and information flow yields superior diagnostic reasoning compared to raw parameter scaling.

OpenGame: Open Agentic Coding for Games

Game development sits at the intersection of creative design and intricate software engineering, demanding the joint orchestration of game engines, real-time loops, and tightly coupled state across many files. While Large Language Models (LLMs) and code agents now solve isolated programming tasks with ease, they consistently stumble when asked to produce a fully playable game from a high-level design, collapsing under cross-file inconsistencies, broken scene wiring, and logical incoherence. We bridge this gap with OpenGame, the first open-source agentic framework explicitly designed for end-to-end web game creation. At its core lies Game Skill, a reusable, evolving capability composed of a Template Skill that grows a library of project skeletons from experience and a Debug Skill that maintains a living protocol of verified fixes - together enabling the agent to scaffold stable architectures and systematically repair integration errors rather than patch isolated syntax bugs. Powering this framework is GameCoder-27B, a code LLM specialized for game engine mastery through a three-stage pipeline of continual pre-training, supervised fine-tuning, and execution-grounded reinforcement learning. Since verifying interactive playability is fundamentally harder than checking static code, we further introduce OpenGame-Bench, an evaluation pipeline that scores agentic game generation along Build Health, Visual Usability, and Intent Alignment via headless browser execution and VLM judging. Across 150 diverse game prompts, OpenGame establishes a new state-of-the-art. We hope OpenGame pushes code agents beyond discrete software engineering problems and toward building complex, interactive real-world applications. Our framework will be fully open-sourced.

  • 11 authors
·
Apr 19 7

CT-Flow: Orchestrating CT Interpretation Workflow with Model Context Protocol Servers

Recent advances in Large Vision-Language Models (LVLMs) have shown strong potential for multi-modal radiological reasoning, particularly in tasks like diagnostic visual question answering (VQA) and radiology report generation. However, most existing approaches for 3D CT analysis largely rely on static, single-pass inference. In practice, clinical interpretation is a dynamic, tool-mediated workflow where radiologists iteratively review slices and use measurement, radiomics, and segmentation tools to refine findings. To bridge this gap, we propose CT-Flow, an agentic framework designed for interoperable volumetric interpretation. By leveraging the Model Context Protocol (MCP), CT-Flow shifts from closed-box inference to an open, tool-aware paradigm. We curate CT-FlowBench, the first large-scale instruction-tuning benchmark tailored for 3D CT tool-use and multi-step reasoning. Built upon this, CT-Flow functions as a clinical orchestrator capable of decomposing complex natural language queries into automated tool-use sequences. Experimental evaluations on CT-FlowBench and standard 3D VQA datasets demonstrate that CT-Flow achieves state-of-the-art performance, surpassing baseline models by 41% in diagnostic accuracy and achieving a 95% success rate in autonomous tool invocation. This work provides a scalable foundation for integrating autonomous, agentic intelligence into real-world clinical radiology.

  • 7 authors
·
Feb 22

EvolvingWorld: An Open-Schema Framework for Co-Evolving Role-Play Agents and World Model in Interactive Literary World

This paper introduces EvolvingWorld, a framework and benchmark for character and world co-evolution in interactive literary worlds. Existing systems either treat interactive literary simulation as static persona imitation or isolated scene generation, failing to capture how characters and worlds evolve together over time. To address this, EvolvingWorld models literary simulation as a long-horizon process where characters interact, scenes progress, and character and world states are persistently updated. Unlike prior systems relying on fixed schemas, EvolvingWorld adopts an open-schema framework to support simulation across diverse literary worlds. The framework consists of two coupled modules: a Character Agent for multi-character role-play and persistent profile evolution, and an LLM-based World Model for global and location/entity-level state maintenance and scene progression. Based on this architecture, we formulate 7 trainable tasks for scene initialization, interaction generation, and state update. We construct a dataset from 57 books, producing 138,596 supervised training samples and 222 snapshots for testing. Furthermore, we introduce a trajectory-level LLM-as-Judge evaluation protocol spanning 10 dimensions and 20 metrics. Experiments show that EvolvingWorld can improve long-horizon simulation by effectively maintaining persistent, coherent character and world development.

tencent Tencent
·
Jul 18 2

MOD-X: A Modular Open Decentralized eXchange Framework proposal for Heterogeneous Interoperable Artificial Agents

As Artificial Intelligence systems evolve from monolithic models to ecosystems of specialized agents, the need for standardized communication protocols becomes increasingly critical. This paper introduces MOD-X (Modular Open Decentralized eXchange), a novel architectural framework proposal for agent interoperability that addresses key limitations of existing protocols. Unlike current approaches, MOD-X proposes a layered architecture with a Universal Message Bus, thorough state management, translation capabilities, and blockchain-based security mechanisms. We present MOD-X's architecture, compare it with existing protocols, and demonstrate its application through a worked example how it enables integration between heterogeneous specialist agents (agents with different architectures, vendors, capabilities, and knowledge representations--including rule-based systems, neural networks, symbolic reasoning engines, and legacy software with agent wrappers). MOD-X's key innovations include a publish-subscribe communication model, semantic capability discovery, and dynamic workflow orchestration--providing a framework that bridges theoretical formalism with practical implementation. This architecture addresses the growing need for truly decentralized, interoperable agent ecosystems that can scale effectively without the need for central coordination.

  • 5 authors
·
Jul 6, 2025 1

Let It Flow: Agentic Crafting on Rock and Roll, Building the ROME Model within an Open Agentic Learning Ecosystem

Agentic crafting requires LLMs to operate in real-world environments over multiple turns by taking actions, observing outcomes, and iteratively refining artifacts. Despite its importance, the open-source community lacks a principled, end-to-end ecosystem to streamline agent development. We introduce the Agentic Learning Ecosystem (ALE), a foundational infrastructure that optimizes the production pipeline for agent LLMs. ALE consists of three components: ROLL, a post-training framework for weight optimization; ROCK, a sandbox environment manager for trajectory generation; and iFlow CLI, an agent framework for efficient context engineering. We release ROME (ROME is Obviously an Agentic Model), an open-source agent grounded by ALE and trained on over one million trajectories. Our approach includes data composition protocols for synthesizing complex behaviors and a novel policy optimization algorithm, Interaction-based Policy Alignment (IPA), which assigns credit over semantic interaction chunks rather than individual tokens to improve long-horizon training stability. Empirically, we evaluate ROME within a structured setting and introduce Terminal Bench Pro, a benchmark with improved scale and contamination control. ROME demonstrates strong performance across benchmarks like SWE-bench Verified and Terminal Bench, proving the effectiveness of the ALE infrastructure.

AGI-LAB-HF AGI Lab
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Dec 31, 2025 5

Subversion Strategy Eval: Can language models statelessly strategize to subvert control protocols?

An AI control protocol is a plan for usefully deploying AI systems that aims to prevent an AI from intentionally causing some unacceptable outcome. This paper investigates how well AI systems can generate and act on their own strategies for subverting control protocols whilst operating statelessly (without shared memory between contexts). To do this, an AI system may need to reliably generate optimal plans in each context, take actions with well-calibrated probabilities, and coordinate plans with other instances of itself without communicating. We develop Subversion Strategy Eval, a suite of eight environments, covering a range of protocols and strategic capabilities, and six sets of affordances that help isolate individual capabilities. We implement the evaluation in Inspect-AI and release it open-source. We evaluate Claude 3.5 models, including helpful-only versions, as well as OpenAI reasoning models. None of the models demonstrate substantial capability in strategizing to subvert control protocols statelessly. However, providing models with additional affordances, such as the ability to share a plan between contexts, can substantially improve performance. We hope our evaluations can act as a leading indicator for when models are capable of subverting control protocols and also relax the worst-case assumption of perfect strategic ability in AI control evaluations.

  • 5 authors
·
Apr 3, 2025

Advancing Open and Reproducible Relational Learning: RelArena-$α$, TabPFN-Rel and RPI

This first release of Prior Labs in relational learning shows our continued commitment to open science. We open-source three pieces of software that we expect to accelerate research in the field towards meaningful real-world impact. We aim to steer further development based on feedback from, and in collaboration with, the community. Given the early stage of development, our α-release targets researchers and early-adopting practitioners. Over the past years, a variety of datasets and tasks for relational learning have emerged, but the community has not converged on a reliable, reproducible way to compare different methods on these tasks. Our α-release, RelArena-α, provides a unified framework for running and comparing baselines on RelBench v1 by standardizing data loading, evaluation protocols, tuning regimes, and support for systems with custom tuning, inspired by established tabular benchmarks such as TabArena. We plan to work with the research community to further develop RelArena-α into a catalyst for progress in the relational learning community. We release the initial version of TabPFN-Rel, a purpose-built relational harness for TabPFN-3. Currently ranked first among models on RelArena-α, TabPFN-Rel makes key improvements upon RDBLearn. Beyond its ranking, TabPFN-Rel serves as a strong baseline, adding to the growing evidence that flattening a relational database into a single table remains competitive with specialized relational architectures on real-world tasks. To facilitate adoption of relational learning methods in research and industry, we release an initial α-version of our Relational Predictive Interface, RPI, an open-source, model-agnostic interface that enables early adopters to easily define problems on new databases and apply any model implemented in RelArena-α, including TabPFN-Rel, to these problems.

Prior-Labs Prior Labs
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Aug 16 2

OpenWAM: An Open, Modular Exploration Towards Systematic World-Action Model Pretraining

World-Action Models inherit world knowledge from video-generative priors, and channel it into executable control signals through embodied experience. Existing systems, however, are monolithic: the generative backbone, visual representation, architecture, information flow, inference procedure, and training data are tightly coupled, obscuring which design choices matter and why. We introduce OpenWAM, an open research stack that turns world-action pretraining into a controlled experimental program. OpenWAM-Infra factorizes the WAM design space into composable modules with unified training, inference, deployment, and evaluation. On this substrate, OpenWAM-Study examines three questions through controlled experiments: what to inherit, how world and action learning interact, and how their synergy scales; and distills three principles: upstream knowledge transfers through a sufficiently capable generative backbone and a compact, information-rich latent space; world-action synergy requires dedicated action capacity, explicit world-to-action information flow, and synchronized joint denoising; and embodied pretraining principally improves out-of-domain generalization, with one-stage co-training over egocentric and robot data integrating world coverage and action grounding. Composing these principles, we build OpenWAM-α, an open WAM pretrained on roughly 6,400 hours of egocentric human and robot data and evaluated across simulation and real-world benchmarks. Across the eight simulation benchmarks and the real-robot experiments, which together span embodiments from single-arm and bimanual manipulation to dexterous hands, OpenWAM-α delivers consistently excellent performance, sustaining its top-tier standing from simulation to the physical world. We release the full stack, including infrastructure, evaluation protocols, pretrained models, and data recipes, to facilitate future research.

OpenWAM OpenWAM
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Sep 6 2

Unleashing Scientific Reasoning for Bio-experimental Protocol Generation via Structured Component-based Reward Mechanism

The foundation of reproducible science lies in protocols that are precise, logically ordered, and executable. The autonomous generation of these protocols through natural language queries could greatly improve the efficiency of the reproduction process. However, current leading large language models (LLMs) often generate incomplete or inconsistent protocols, limiting their utility. To address this limitation, we first introduce SciRecipe, a large-scale dataset of over 12K structured protocols spanning 27 biological subfields and encompassing both comprehension and problem-solving tasks. To further improve protocol generation, we propose the "Sketch-and-Fill" paradigm, which separates analysis, structuring, and expression to ensure each step is explicit and verifiable. Complementing this, the structured component-based reward mechanism evaluates step granularity, action order, and semantic fidelity, aligning model optimization with experimental reliability. Building on these components, we develop Thoth, trained through a staged Knowledge-to-Action process that progresses from knowledge acquisition to operational reasoning and ultimately to robust, executable protocol generation. Across multiple benchmarks, Thoth consistently surpasses both proprietary and open-source LLMs, achieving significant improvements in step alignment, logical sequencing, and semantic accuracy. Our approach paves the way for reliable scientific assistants that bridge knowledge with experimental execution. All data, code, and models will be released publicly.

  • 11 authors
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Oct 17, 2025 2

SR-Prominence: A Crowdsourced Protocol and Dataset Suite for Perceptually-Weighted Super-Resolution Artifact Evaluation

Modern image super-resolution methods generate detailed, visually appealing results, but they often introduce visual artifacts: unnatural patterns and texture distortions that degrade perceived quality. These defects vary widely in perceptual impact--some are barely noticeable, while others are highly disturbing--yet existing detection methods treat them equally. We propose artifact prominence as an evaluative target, defined as the fraction of viewers who judge a highlighted region to contain a noticeable artifact. We design a crowdsourced annotation protocol and construct SR-Prominence, a dataset suite containing 3,935 artifact masks from DeSRA, Open Images, Urban100, and a realistic no-ground-truth Urban100-HR setting, annotated with prominence. Re-annotating DeSRA reveals that 48.2% of its in-lab binary artifacts are not noticed by a majority of viewers. Across the suite, we audit SR artifact detectors, image-quality metrics, and SR methods. We find that classical full-reference metrics, especially SSIM and DISTS, provide surprisingly strong localized prominence signals, whereas no-reference IQA methods and specialized artifact detectors often fail to generalize across datasets and reference settings. SR-Prominence is released with an objective scoring protocol that allows new metrics to be benchmarked on our suite without further crowdsourcing. Together, the data and protocols enable SR artifact evaluation to move from binary defect presence toward perceptual impact. SR-Prominence is available at https://huggingface.co/datasets/imolodetskikh/sr-artifact-prominence.

  • 6 authors
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May 13

CV-Arena: An Open Benchmark for Instructional Computer Vision Problem Solving with Human-AI Collaborative Preferences

Instruction-guided image editing is becoming a general interface for visual work, yet existing benchmarks still focus largely on narrow appearance edits and do not fully capture the diversity of real-image tasks in professional workflows. Here, we define instructional computer vision problem solving as a broader formulation of image editing: given a real input image and a natural-language instruction, a system must produce an edited output that realizes the requested transformation while satisfying explicit preservation, geometric, physical, and usability constraints. We introduce CV-Arena, an open benchmark designed to evaluate this capability at professional scales. CV-Arena contains 12K high-resolution real-image instruction pairs spanning 16 instruction-based visual task types, constructed using CogRetriever, a dual-track retrieval-and-curation pipeline that combines targeted web search, agentic query refinement, verification, and traceability. To evaluate models at scale while preserving human fidelity, we propose Active Elo, a human-AI collaborative preference protocol that leverages CV-Judge, a logic-gated, multi-dimensional VLM evaluator, to reject clear failures and resolve high-confidence comparisons; and to route close, high-quality comparisons to expert raters. Mixed human and AI supervision is then aggregated through reliability-weighted Elo updates. Our comprehensive evaluation of 21 systems, including proprietary, open-source, and agentic models, on CV-Arena reveals persistent gaps in instruction adherence, physical reasoning, structural control, and fine-grained detail preservation. We further develop CV-Agent, a lightweight agentic model that combines planning, editing, and verification, and demonstrate that closed-loop reasoning is a promising direction for professional-grade instruction-following visual editing.

  • 15 authors
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May 29

QVAC Genesis III: A Large-Scale, High-Quality Open Synthetic STEM Corpus for Efficient Language Model Pre-Training

High-quality pre-training data is a critical bottleneck for educational and STEM-specific language models targeting edge AI and on-device deployment where token budgets are tightly constrained. While major organizations train ever-larger models on private corpora, the open ecosystem lacks STEM-focused synthetic datasets that deliver high per-token learning value efficiently for small models. To address this gap, we introduce QVAC Genesis III, a 191.43B-token, STEM-focused multi-domain synthetic corpus covering 19 domains across several difficulty levels and different educational styles. QVAC Genesis III is built via a dual generation strategy that performs targeted teacher distillation using a weak edge-scale student model as signal: the student's failures are converted into corrective explanations, while its successes are expanded into contrastive option-level reasoning over all answer choices. We further introduce an LLM-as-a-parser evaluation protocol that extracts final answers from free-form outputs and tracks both accuracy and answer validity. To validate the effectiveness of our QVAC Genesis III data, we conduct controlled from-scratch ablations with 1.7B-parameter models, showing that models trained with QVAC Genesis III consistently outperform both models trained with the open-source synthetic corpus Cosmopedia-v2 and the publicly released Cosmo-1B model across ARC, GPQA Diamond, and MMLU STEM benchmarks, achieving up to +28.57% on ARC-E and +21.35% on ARC-C, while reaching a Valid Answer Rate of up to 99.45%.

  • 5 authors
·
Sep 16

PHOEBI: An Open-World Benchmark for Bacterial Identification in Phase-Contrast Microscopy

Optical microscopy (OM) enables rapid, label-free imaging of live bacteria and is the standard instrument for species identification across clinical, environmental, and industrial microbiology. Real samples, however, are routinely polymicrobial and may contain organisms never seen during training, and no computer-vision benchmark evaluates multi-label species identification from phase-contrast microscopy (PCM) of such mixtures. We introduce Phase-contrast Optical bEnchmark for Bacterial Identification (PHOEBI), a wet-lab-prepared dataset of 120{,}000 PCM images covering 40 combinations of six rod-shaped species, together with a leave-combinations-out (LCO) protocol that holds out entire species combinations, mirroring a model trained on catalogued mixtures that must recognise new ones. Under LCO, gradient-trained per-image classifiers, from fine-tuned backbones to attention-based multiple-instance learning, collapse on unseen combinations despite high in-distribution accuracy, and the failure lies in how per-image predictions are aggregated rather than in the visual representation. We propose three lightweight anchor-based decoders that read each species' presence against fixed geometric prototypes over a shared frozen tile-feature pool, and they remain stable under the same shift. Without additional training, the same features also support open-set rejection of unseen species and the discovery of a new class from unlabeled test images, with negligible disruption to the known classes.

  • 3 authors
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Sep 26

Hippocrates: An Open-Source Framework for Advancing Large Language Models in Healthcare

The integration of Large Language Models (LLMs) into healthcare promises to transform medical diagnostics, research, and patient care. Yet, the progression of medical LLMs faces obstacles such as complex training requirements, rigorous evaluation demands, and the dominance of proprietary models that restrict academic exploration. Transparent, comprehensive access to LLM resources is essential for advancing the field, fostering reproducibility, and encouraging innovation in healthcare AI. We present Hippocrates, an open-source LLM framework specifically developed for the medical domain. In stark contrast to previous efforts, it offers unrestricted access to its training datasets, codebase, checkpoints, and evaluation protocols. This open approach is designed to stimulate collaborative research, allowing the community to build upon, refine, and rigorously evaluate medical LLMs within a transparent ecosystem. Also, we introduce Hippo, a family of 7B models tailored for the medical domain, fine-tuned from Mistral and LLaMA2 through continual pre-training, instruction tuning, and reinforcement learning from human and AI feedback. Our models outperform existing open medical LLMs models by a large-margin, even surpassing models with 70B parameters. Through Hippocrates, we aspire to unlock the full potential of LLMs not just to advance medical knowledge and patient care but also to democratize the benefits of AI research in healthcare, making them available across the globe.

  • 7 authors
·
Apr 25, 2024

NeoBabel: A Multilingual Open Tower for Visual Generation

Text-to-image generation advancements have been predominantly English-centric, creating barriers for non-English speakers and perpetuating digital inequities. While existing systems rely on translation pipelines, these introduce semantic drift, computational overhead, and cultural misalignment. We introduce NeoBabel, a novel multilingual image generation framework that sets a new Pareto frontier in performance, efficiency and inclusivity, supporting six languages: English, Chinese, Dutch, French, Hindi, and Persian. The model is trained using a combination of large-scale multilingual pretraining and high-resolution instruction tuning. To evaluate its capabilities, we expand two English-only benchmarks to multilingual equivalents: m-GenEval and m-DPG. NeoBabel achieves state-of-the-art multilingual performance while retaining strong English capability, scoring 0.75 on m-GenEval and 0.68 on m-DPG. Notably, it performs on par with leading models on English tasks while outperforming them by +0.11 and +0.09 on multilingual benchmarks, even though these models are built on multilingual base LLMs. This demonstrates the effectiveness of our targeted alignment training for preserving and extending crosslingual generalization. We further introduce two new metrics to rigorously assess multilingual alignment and robustness to code-mixed prompts. Notably, NeoBabel matches or exceeds English-only models while being 2-4x smaller. We release an open toolkit, including all code, model checkpoints, a curated dataset of 124M multilingual text-image pairs, and standardized multilingual evaluation protocols, to advance inclusive AI research. Our work demonstrates that multilingual capability is not a trade-off but a catalyst for improved robustness, efficiency, and cultural fidelity in generative AI.

  • 4 authors
·
Jul 8, 2025 1

OpenUS: A Fully Open-Source Foundation Model for Ultrasound Image Analysis via Self-Adaptive Masked Contrastive Learning

Ultrasound (US) is one of the most widely used medical imaging modalities, thanks to its low cost, portability, real-time feedback, and absence of ionizing radiation. However, US image interpretation remains highly operator-dependent and varies significantly across anatomical regions, acquisition protocols, and device types. These variations, along with unique challenges such as speckle, low contrast, and limited standardized annotations, hinder the development of generalizable, label-efficient ultrasound AI models. In this paper, we propose OpenUS, the first reproducible, open-source ultrasound foundation model built on a large collection of public data. OpenUS employs a vision Mamba backbone, capturing both local and global long-range dependencies across the image. To extract rich features during pre-training, we introduce a novel self-adaptive masking framework that combines contrastive learning with masked image modeling. This strategy integrates the teacher's attention map with student reconstruction loss, adaptively refining clinically-relevant masking to enhance pre-training effectiveness. OpenUS also applies a dynamic learning schedule to progressively adjust the difficulty of the pre-training process. To develop the foundation model, we compile the largest to-date public ultrasound dataset comprising over 308K images from 42 publicly available datasets, covering diverse anatomical regions, institutions, imaging devices, and disease types. Our pre-trained OpenUS model can be easily adapted to specific downstream tasks by serving as a backbone for label-efficient fine-tuning. Code is available at https://github.com/XZheng0427/OpenUS.

Lowering the Barrier to IREX Participation: Open-Source Algorithms, Toolkit, and Benchmarking for Iris Recognition

This paper proposes two new open-source iris recognition algorithms, providing both Python and IREX-compliant C++ implementations to be submitted to the official IREX X program. This work has two primary goals: (a) to conduct the first-ever assessment of open-source iris recognition solutions according to IREX testing protocols, and (b) to offer a model C++ submission that significantly facilitates the entry of other teams' open-source methods into the IREX evaluation. The new methods consist of two Neural Networks trained with: (i) Triplet loss with Batch-Hard Triplet mining (TripletIris), and (ii) ArcFace loss (ArcIris). The paper also provides open-source IREX-compliant C++ implementations of two existing methods: (a) an iris image filtering-based algorithm utilizing human saliency-driven kernels (HDBIF), and (b) a human-interpretable algorithm for detecting and comparing Fuchs' crypts (CRYPTS). Except for CRYPTS, which faced timing constraints during 1:N search, these methods have undergone the official IREX X evaluation and have also been assessed using several popular academic benchmarks: Quality-Face/Iris Research Ensemble, Warsaw-Biobase Post-Mortem Iris, CASIA-Iris-Thousand-V4, CASIA-Iris-Lamp-V4, IIT Delhi Iris Database, IIITD Contact Lens Iris Database, NDIris3D, and Notre Dame Variable Iris Image Quality Release 2. Finally, this paper also provides open-source models for iris segmentation and circle estimation that can be incorporated into any new iris recognition method.

  • 3 authors
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May 19

RouteJudge: An Open Platform for Reproducible and Preference-Aware LLM Routing

We present RouteJudge, an online pairwise preference evaluation framework for LLM routing systems, with a public platform available at https://routejudge.cn. Different from model-level response evaluation, RouteJudge focuses on router-level decision quality. For each user query, multiple routing strategies independently recommend candidate models under the same model pool and budget constraints. The selected model responses are then presented to users through anonymous pairwise comparisons, and the resulting user preferences are attributed back to the routing strategies behind the compared responses. Each evaluation record stores the query, routing decisions, model responses, preference labels, cost, latency, and task metadata, enabling preference-aware, cost-aware, and task-conditioned analysis of LLM routers. To support the continuous expansion of routing methods in RouteJudge, we further release ORBIT (Optimal Routing and Budgeted Inference Toolbox), a modular and extensible toolbox that standardizes the end-to-end workflow of LLM routing. ORBIT provides unified interfaces for benchmark loading, query representation, router implementation, budget-aware evaluation, and method comparison, allowing researchers to develop and evaluate routing algorithms under consistent protocols. It also serves as the submission and integration layer for RouteJudge: researchers can implement routing methods within ORBIT, validate them on existing routing benchmarks, and submit compatible routers for online preference-based evaluation. The code of ORBIT is available at https://github.com/LAMDA-Model-Reuse/ORBIT.

  • 3 authors
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Jun 18

Re:Cognize -- Open-Set Comic Character Re-Identification

A manga reader meets a character on one page and knows them on sight a hundred pages later, without ever being handed a cast list. Re-identifying comic characters demands the same, open-set and sequential: pages arrive as a stream in reading order, new faces appear before anyone names them, and the cast is assembled as the story is read. Re:Cognize evaluates recognition as the story is read, not against a cast handed over in advance: four protocols on one query stream, from closed-set retrieval to a cast the model must build and grow itself. The surprise is where models fail. Recognising is close to solved: one reference image per character already ranks as well as a gallery built in advance. Knowing what to believe is not: a model that adds its own matches makes its cast worse, while the same growth with correct labels would gain over twenty points of top-1 accuracy. The bottleneck is acceptance, not vision, and one comparison decides it: an addition pays exactly when it is right more often than the cast already was on the queries it takes over. The comparison has nothing to fit, and measured on half of a new corpus it calls the other half correctly. ReCast puts it to work with nothing fitted on data: a cast sheet of one running average per character, grown only where the page itself vouches for a crop. It recovers a third to two thirds of what perfect labels would, depending on whether the cast starts from random examples or from first appearances. Re:Cognize measures whether a model can read along; ReCast is a cast that does. Our claims are on identity maintenance, recognising characters already met; the emergence of new ones is measured as a diagnostic under a fixed reference rule, and we propose no method for it.

  • 4 authors
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Sep 26

ufakzeka-karar: An Open Turkish Typed-Decision Model with Order-Invariant Option Scoring

ufakzeka-karar is an open Turkish decision model with 182,494,466 parameters. Given a Turkish text and questions of a fixed answer type (a choice, a level on an ordered scale, or yes or no), it returns a temperature-scaled probability for every option and an expected error that serves as a "not sure" signal, without generating text and in one CPU forward pass for up to ten options. Built on the lab's ufakzeka-1-base, its head scores each option blind to the others at shared positions, so the answer does not depend on option order. A sequential head trained with shuffled options was about as accurate but changed 2.3 to 2.8 percent of its answers when only the option order changed; REINFORCE lost 10.2 points (0.102) of macro F1 to cross-entropy. On the open set of HakemBench v1.0 (4,275 questions, 7 tracks) the released model ranks 7th of 16 rows with a composite of 0.660 (95% interval 0.642 to 0.677). Temperature scaling lowers calibration error (smooth ECE) on the development set but raises it on held-out support questions, from 0.027 to 0.045 for the first scored run, which never trained on them; the released model later trained on them, so its 0.036 to 0.064 is not an unseen-question test. The released model is the last of three runs scored on HakemBench, and its numbers are not blind. The second run's new training data was aimed at the first run's errors on the full test set in guardrails, moderation and customer support, and the released run was trained after the second run's guardrail results on the full test set were read, under a protocol fixed in writing before any of its data, code or runs. All its numbers come after these readings; its guardrail, moderation and customer support numbers carry the flag "shaped by reading the test results". With every model scored on the other four tracks only, its composite is 0.678, 6th of 16. Weights and code are under Apache-2.0.

  • 1 authors
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Oct 4

Real-time Appearance-based Gaze Estimation for Open Domains

Appearance-based gaze estimation (AGE) has achieved remarkable performance in constrained settings, yet we reveal a significant generalization gap where existing AGE models often fail in practical, unconstrained scenarios, particularly those involving facial wearables and poor lighting conditions. We attribute this failure to two core factors: limited image diversity and inconsistent label fidelity across different datasets, especially along the pitch axis. To address these, we propose a robust AGE framework that enhances generalization without requiring additional human-annotated data. First, we expand the image manifold via an ensemble of augmentation techniques, including synthesis of eyeglasses, masks, and varied lighting. Second, to mitigate the impact of anisotropic inter-dataset label deviation, we reformulate gaze regression as a multi-task learning problem, incorporating multi-view supervised contrastive (SupCon) learning, discretized label classification, and eye-region segmentation as auxiliary objectives. To rigorously validate our approach, we curate new benchmark datasets designed to evaluate gaze robustness under challenging conditions, a dimension largely overlooked by existing evaluation protocols. Our MobileNet-based lightweight model achieves generalization performance competitive with the state-of-the-art (SOTA) UniGaze-H, while utilizing less than 1\% of its parameters, enabling high-fidelity, real-time gaze tracking on mobile devices.

  • 5 authors
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Mar 26

PEARL: Geometry Aligns Semantics for Training-Free Open-Vocabulary Semantic Segmentation

Training-free open-vocabulary semantic segmentation (OVSS) promises rapid adaptation to new label sets without retraining. Yet, many methods rely on heavy post-processing or handle text and vision in isolation, leaving cross-modal geometry underutilized. Others introduce auxiliary vision backbones or multi-model pipelines, which increase complexity and latency while compromising design simplicity. We present PEARL, \underline{P}rocrust\underline{e}s \underline{a}lignment with text-awa\underline{r}e \underline{L}aplacian propagation, a compact two-step inference that follows an align-then-propagate principle. The Procrustes alignment step performs an orthogonal projection inside the last self-attention block, rotating keys toward the query subspace via a stable polar iteration. The text-aware Laplacian propagation then refines per-pixel logits on a small grid through a confidence-weighted, text-guided graph solve: text provides both a data-trust signal and neighbor gating, while image gradients preserve boundaries. In this work, our method is fully training-free, plug-and-play, and uses only fixed constants, adding minimal latency with a small per-head projection and a few conjugate-gradient steps. Our approach, PEARL, sets a new state-of-the-art in training-free OVSS without extra data or auxiliary backbones across standard benchmarks, achieving superior performance under both with-background and without-background protocols.

  • 6 authors
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Mar 22

EvoForest: A Novel Machine-Learning Paradigm via Open-Ended Evolution of Computational Graphs

Modern machine learning is still largely organized around a single recipe: choose a parameterized model family and optimize its weights. Although highly successful, this paradigm is too narrow for many structured prediction problems, where the main bottleneck is not parameter fitting but discovering what should be computed from the data. Success often depends on identifying the right transformations, statistics, invariances, interaction structures, temporal summaries, gates, or nonlinear compositions, especially when objectives are non-differentiable, evaluation is cross-validation-based, interpretability matters, or continual adaptation is required. We present EvoForest, a hybrid neuro-symbolic system for end-to-end open-ended evolution of computation. Rather than merely generating features, EvoForest jointly evolves reusable computational structure, callable function families, and trainable low-dimensional continuous components inside a shared directed acyclic graph. Intermediate nodes store alternative implementations, callable nodes encode reusable transformation families such as projections, gates, and activations, output nodes define candidate predictive computations, and persistent global parameters can be refined by gradient descent. For each graph configuration, EvoForest evaluates the discovered computation and uses a lightweight Ridge-based readout to score the resulting representation against a non-differentiable cross-validation target. The evaluator also produces structured feedback that guides future LLM-driven mutations. In the 2025 ADIA Lab Structural Break Challenge, EvoForest reached 94.13% ROC-AUC after 600 evolution steps, exceeding the publicly reported winning score of 90.14% under the same evaluation protocol.

  • 2 authors
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Mar 25

Multimodal Semantic-Probabilistic Objectness for Open World Object Detection

Open-world object detection (OWOD) requires a detector to recognize known categories, discover unnamed objects from unseen categories, and incrementally learn newly annotated classes. PROB improves unknown discovery by modeling class-agnostic probabilistic objectness in the decoder-query space. However, visual objectness alone cannot determine whether an object-like query corresponds to a hard known instance, an unseen-category object, or background clutter, resulting in an ambiguous known-unknown decision boundary. We propose MSPO, a lightweight semantic calibration framework that augments PROB with task-aware known-category language priors while preserving its detector architecture and incremental learning protocol. For each currently known category, MSPO constructs an extended text description covering category attributes, visual appearance, typical scenes, and functional usage, and encodes it using a frozen CLIP text encoder. Decoder query features are projected into the same semantic space to estimate their support from the current known-category semantics. This semantic evidence is fused with PROB's visual objectness to calibrate known and unknown predictions without turning OWOD into open-vocabulary classification. Importantly, MSPO never uses future-category names, and all unseen categories remain unnamed during evaluation. Experiments on M-OWODB and S-OWODB show that MSPO improves the strong PROB baseline on the main aggregate metrics while retaining competitive unknown recall. It also improves early unknown-confusion metrics and raises PASCAL VOC final mAP by up to 2.7 points. These results demonstrate that known-category language semantics provide an effective calibration signal for probabilistic objectness under the standard OWOD setting.

  • 2 authors
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Jul 26

MCPSecBench: A Systematic Security Benchmark and Playground for Testing Model Context Protocols

Large Language Models (LLMs) are increasingly integrated into real-world applications via the Model Context Protocol (MCP), a universal, open standard for connecting AI agents with data sources and external tools. While MCP enhances the capabilities of LLM-based agents, it also introduces new security risks and expands their attack surfaces. In this paper, we present the first systematic taxonomy of MCP security, identifying 17 attack types across 4 primary attack surfaces. We introduce MCPSecBench, a comprehensive security benchmark and playground that integrates prompt datasets, MCP servers, MCP clients, attack scripts, and protection mechanisms to evaluate these attacks across three major MCP providers. Our benchmark is modular and extensible, allowing researchers to incorporate custom implementations of clients, servers, and transport protocols for systematic security assessment. Experimental results show that over 85% of the identified attacks successfully compromise at least one platform, with core vulnerabilities universally affecting Claude, OpenAI, and Cursor, while prompt-based and tool-centric attacks exhibit considerable variability across different hosts and models. In addition, current protection mechanisms have little effect against these attacks. Overall, MCPSecBench standardizes the evaluation of MCP security and enables rigorous testing across all MCP layers.

  • 3 authors
·
Aug 17, 2025

DharmaOCR: Specialized Small Language Models for Structured OCR that outperform Open-Source and Commercial Baselines

This manuscript introduces DharmaOCR Full and Lite, a pair of specialized small language models (SSLMs) for structured OCR that jointly optimize transcription quality, generation stability, and inference cost. It also presents DharmaOCR-Benchmark, a benchmark that covers printed, handwritten, and legal/administrative documents, and proposes a unified evaluation protocol that measures fidelity and structure while explicitly tracking text degeneration as a first-class benchmark metric (alongside unit cost). Beyond reporting degeneration rates, the manuscript empirically shows degeneration is not merely a quality failure, since it materially worsens production performance by increasing response time, reducing throughput, and inflating computational cost due to abnormally long generations. To the best of the author's knowledge, as a methodological contribution, this is the first application of Direct Preference Optimization (DPO) for OCR, explicitly using degenerate generations as rejected examples to penalize looping behavior. Combined with Supervised Fine-Tuning (SFT) for enforcing a strict JSON schema (header, margin, footer, and text), DPO consistently reduces degeneration rate across model families (up to 87.6% relative) while preserving or improving extraction quality. The resulting models, namely, DharmaOCR Full (7B) and DharmaOCR Lite (3B), set a new state-of-the-art on DharmaOCR-Benchmark, outperforming each open-source and commercial baseline model evaluated regarding extraction quality, reaching 0.925 and 0.911 scores with 0.40% and 0.20% degeneration rates. AWQ quantization reduced up to 22% per-page cost with negligible quality loss, enabling a strong quality-cost trade-off in comparison to proprietary OCR APIs and open-source alternatives.

  • 4 authors
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Apr 14