Daily Papers

Single-cell cancer datasets are predominantly cross-sectional and rarely provide paired or longitudinal observations linking individual healthy-like cells to tumor-associated states. We introduce CancerZigZag, a seed-initialized diffusion-based framework for exploratory generation of tumor-associated single-cell candidate clouds from unpaired epithelial cell populations. For each cancer context, a diffusion model is trained exclusively on tumor-derived epithelial cells and applied through repeated partial latent-space perturbation and reverse diffusion to held-out healthy-like seeds, generating stochastic candidate clouds without paired measurements or classifier guidance. We applied CancerZigZag to colorectal, breast, lung, and renal cell carcinoma contexts and explored parameter landscapes defined by perturbation depth and the number of ZigZag cycles. Across the reported operating configurations, candidate clouds contained outputs classified toward held-out tumor-derived reference populations for each evaluated seed. Residual seed-dependent organization varied across contexts, with the clearest structure in colorectal cancer, more modest organization in lung cancer, and limited cloud-level structure in breast and renal cell carcinoma. Representative candidates also showed directional concordance with transcriptional shifts observed between held-out healthy-like and tumor-derived reference populations. CancerZigZag is not interpreted as a model of deterministic healthy-to-tumor transformation or cellular progression. Instead, it provides a reference-informed framework for exploring tumor-associated candidate distributions from unpaired healthy-like seeds and quantifying the context-dependent relationship between tumor-associated displacement and residual seed dependence.

Frozen-backbone transfer with Vision Transformers faces two under-addressed issues: optimization instability when adapters are naively inserted into a fixed feature extractor, and the absence of principled guidance for setting adapter capacity. We introduce AdapterTune, which augments each transformer block with a residual low-rank bottleneck whose up-projection is zero-initialized, guaranteeing that the adapted network starts exactly at the pretrained function and eliminates early-epoch representation drift. On the analytical side, we formalize adapter rank as a capacity budget for approximating downstream task shifts in feature space. The resulting excess-risk decomposition predicts monotonic but diminishing accuracy gains with increasing rank, an ``elbow'' behavior we confirm through controlled sweeps. We evaluate on 9 datasets and 3 backbone scales with multi-seed reporting throughout. On a core 5 dataset transfer suite, AdapterTune improves top-1 accuracy over head-only transfer by +14.9 points on average while training only 0.92 of the parameters required by full fine-tuning, and outperforms full fine-tuning on 10 of 15 dataset-backbone pairs. Across the full benchmark, AdapterTune improves over head-only transfer on every dataset-backbone pair tested. Ablations on rank, placement, and initialization isolate each design choice. The code is available at: https://github.com/salimkhazem/adaptertune

Recent advances in Conditional Diffusion Models have led to substantial capabilities in various domains. However, understanding the impact of variations in the initial seed vector remains an underexplored area of concern. Particularly, latent-based diffusion models display inconsistencies in image generation under standard conditions when initialized with suboptimal initial seed vectors. To understand the impact of the initial seed vector on generated samples, we propose a reliability evaluation framework that evaluates the generated samples of a diffusion model when the initial seed vector is subjected to various synthetic shifts. Our results indicate that slight manipulations to the initial seed vector of the state-of-the-art Stable Diffusion (Rombach et al., 2022) can lead to significant disturbances in the generated samples, consequently creating images without the effect of conditioning variables. In contrast, GLIDE (Nichol et al., 2022) stands out in generating reliable samples even when the initial seed vector is transformed. Thus, our study sheds light on the importance of the selection and the impact of the initial seed vector in the latent-based diffusion model.

Sparse autoencoders (SAEs) are a useful tool for uncovering human-interpretable features in the activations of large language models (LLMs). While some expect SAEs to find the true underlying features used by a model, our research shows that SAEs trained on the same model and data, differing only in the random seed used to initialize their weights, identify different sets of features. For example, in an SAE with 131K latents trained on a feedforward network in Llama 3 8B, only 30% of the features were shared across different seeds. We observed this phenomenon across multiple layers of three different LLMs, two datasets, and several SAE architectures. While ReLU SAEs trained with the L1 sparsity loss showed greater stability across seeds, SAEs using the state-of-the-art TopK activation function were more seed-dependent, even when controlling for the level of sparsity. Our results suggest that the set of features uncovered by an SAE should be viewed as a pragmatically useful decomposition of activation space, rather than an exhaustive and universal list of features "truly used" by the model.

Collecting human-chatbot dialogues typically demands substantial manual effort and is time-consuming, which limits and poses challenges for research on conversational AI. In this work, we propose DialogueForge - a framework for generating AI-simulated conversations in human-chatbot style. To initialize each generated conversation, DialogueForge uses seed prompts extracted from real human-chatbot interactions. We test a variety of LLMs to simulate the human chatbot user, ranging from state-of-the-art proprietary models to small-scale open-source LLMs, and generate multi-turn dialogues tailored to specific tasks. In addition, we explore fine-tuning techniques to enhance the ability of smaller models to produce indistinguishable human-like dialogues. We evaluate the quality of the simulated conversations and compare different models using the UniEval and GTEval evaluation protocols. Our experiments show that large proprietary models (e.g., GPT-4o) generally outperform others in generating more realistic dialogues, while smaller open-source models (e.g., Llama, Mistral) offer promising performance with greater customization. We demonstrate that the performance of smaller models can be significantly improved by employing supervised fine-tuning techniques. Nevertheless, maintaining coherent and natural long-form human-like dialogues remains a common challenge across all models.

Dynamic Gaussian representations have made high-quality, real-time volumetric video increasingly practical, yet challenging motion can still break their reconstruction: small fast-moving objects may disappear, and fine textures in highly dynamic regions are often lost. In particular, simply training longer or using more Gaussians may still fail to recover small, fast-moving objects. We argue that the key bottleneck is not representational capacity itself, but where and when Gaussian primitives are allocated. Existing allocation strategies rely on current Gaussian locations and often overlook the spatiotemporal destinations of relocated Gaussians. To address these limitations, we introduce two complementary strategies. First, Seed Injection identifies under-reconstructed dynamic regions using temporal appearance changes and reconstruction errors, and initializes new Gaussians at geometrically plausible 3D locations through multi-view observations, independent of existing Gaussian locations. Second, Temporal Biased Relocation uses time-resolved optimization signals to guide the spatiotemporal placement of relocated Gaussians. Both strategies maintain a fixed Gaussian budget without modifying the underlying representation. Experiments across multiple dynamic-scene datasets demonstrate improved reconstruction quality, particularly in highly dynamic regions, recovering small, rapidly moving objects and fine-grained appearance details.

Large Language Models (LLMs) have recently exhibited remarkable reasoning capabilities, largely enabled by supervised fine-tuning (SFT)- and reinforcement learning (RL)-based post-training on high-quality reasoning data. However, reproducing and extending these capabilities in open and scalable settings is hindered by three fundamental data-centric challenges: (1) the cold-start problem, arising from the lack of seed datasets with detailed, long Chain-of-Thought (CoT) trajectories needed to initialize reasoning policies; (2) limited domain coverage, as most existing open-source reasoning datasets are concentrated in mathematics, with limited coverage of broader scientific disciplines; and (3) the annotation bottleneck, where the difficulty of frontier-level reasoning tasks makes reliable human annotation prohibitively expensive or infeasible. To address these challenges, we introduce CHIMERA, a compact synthetic reasoning dataset comprising 9K samples for generalizable cross-domain reasoning. CHIMERA is constructed with three key properties: (1) it provides rich, long CoT reasoning trajectories synthesized by state-of-the-art reasoning models; (2) it has broad and structured coverage, spanning 8 major scientific disciplines and over 1K fine-grained topics organized via a model-generated hierarchical taxonomy; and (3) it employs a fully automated, scalable evaluation pipeline that uses strong reasoning models to cross-validate both problem validity and answer correctness. We use CHIMERA to post-train a 4B Qwen3 model. Despite the dataset's modest size, the resulting model achieves strong performance on a suite of challenging reasoning benchmarks, including GPQA-Diamond, AIME 24/25/26, HMMT 25, and Humanity's Last Exam, approaching or matching the reasoning performance of substantially larger models such as DeepSeek-R1 and Qwen3-235B.

Fine-tuning pretrained contextual word embedding models to supervised downstream tasks has become commonplace in natural language processing. This process, however, is often brittle: even with the same hyperparameter values, distinct random seeds can lead to substantially different results. To better understand this phenomenon, we experiment with four datasets from the GLUE benchmark, fine-tuning BERT hundreds of times on each while varying only the random seeds. We find substantial performance increases compared to previously reported results, and we quantify how the performance of the best-found model varies as a function of the number of fine-tuning trials. Further, we examine two factors influenced by the choice of random seed: weight initialization and training data order. We find that both contribute comparably to the variance of out-of-sample performance, and that some weight initializations perform well across all tasks explored. On small datasets, we observe that many fine-tuning trials diverge part of the way through training, and we offer best practices for practitioners to stop training less promising runs early. We publicly release all of our experimental data, including training and validation scores for 2,100 trials, to encourage further analysis of training dynamics during fine-tuning.

Adaptive optimizers such as Adam and AdamW apply the same update rule regardless of whether training is in a chaotic early phase or near convergence. We introduce PsiLogic, an optimizer that augments Adam with a dynamic Active Cancellation Term gated by a dual exponential moving average (EMA) of scale-normalized gradient norms. The resulting chaos detector strengthens damping when gradient statistics are unstable and fades to zero as training stabilizes, providing an implicit warmup without a hand-tuned schedule. We evaluate PsiLogic against Adam, AdamW, and Lion using FairBench -- a reproducible benchmark protocol with per-optimizer learning-rate sweeps, identical initialization per seed, and Welch t-tests. On an NVIDIA H100 80GB reference run (4 arenas, 3 seeds, 2000 steps, bf16 AMP), PsiLogic achieves the best validation metric in three of four arenas: NLP perplexity 7.79 +/- 0.18 vs. 8.17 +/- 0.08 (AdamW, p = 0.049), ViT top-1 accuracy 0.244 +/- 0.006 vs. 0.223 +/- 0.002 (AdamW, p = 0.015), and ResNet top-1 accuracy 0.222 +/- 0.001 vs. 0.172 +/- 0.004 (Adam, p = 0.001). On diffusion, validation MSE is statistically tied with Adam/AdamW (p = 0.49). ResNet accuracy vs. AdamW is a numerical tie without significance at three seeds (p = 0.44). Peak GPU memory is comparable across optimizers; PsiLogic incurs 1.2--1.8x wall-clock overhead on transformer-heavy arenas (implementation-bound). We release an open-source PyTorch implementation, the full FairBench harness, and all raw CSV outputs to support independent verification.

Test-time training (TTT) views sequence modeling as an online learning problem in which fast weights are updated by an internal learning rule. Despite the growing number of TTT variants, existing approaches typically hard-code each variant separately, which makes it difficult to design new TTT methods and to isolate the role of each component. To address this, we propose Modular TTT, a framework that represents the inner learner as a directed acyclic graph and exposes the fast-weight network, loss function, learning rate, weight decay, and normalization as explicit design dimensions. Modular TTT automatically composes primitive-level train-view forward, train-view backward, and causal query-view rules into the full graph-level TTT computation, including the fast-weight state transition. Using Modular TTT, we systematically ablate the components of TTT and find that small learning-rate initialization, weight decay, and a single-layer nonlinearity improve performance, while MSE and inner-product losses perform similarly. Deeper fast-weight networks and normalization tend to hurt performance because they induce excessively large activations, while residual connections and gating provide little measurable benefit. Guided by these findings, we train the best resulting variant as 410M- and 1.45B-parameter models on 100B tokens, and observe training loss and benchmark performance comparable to Gated DeltaNet.

Deep equilibrium models promise input-adaptive implicit computation: harder problems should demand more solver iterations, and the solved equilibrium should encode the result of genuine iterative inference. We report a cautionary study of a port-Hamiltonian DEQ with a learned initialization on two reasoning tasks -- ProofWriter entailment over frozen DeBERTa embeddings and a BFS-verified graph-reachability benchmark -- in which the implicit computation is a silent no-op. Across tasks, seeds, and controlled ablation arms, the solved equilibrium equals the solver's start point to numerical precision, and bypassing the solver entirely changes test accuracy by +0.00 percentage points in 18 of 19 training runs. Controlled interventions falsify the tempting explanation: removing the anchoring term reproduces every result, and retraining with noise-decoupled starts yields a solver that converges to the noisy start while the decoder learns to ignore it. The single escaping run diverges instead (|h^{*}-z_0|=171), producing a co-adapted noise channel whose removal improves accuracy. Iteration counts are uncorrelated with ground-truth difficulty (r=0.009), and the full apparatus never outperforms a two-layer MLP on either task. We trace the mechanism to gradient starvation along two distinct routes, show that the standard zeroing ablation is confounded and gives wildly seed-dependent answers where the correct substitution test gives a stable zero, and distill a four-test diagnostic protocol for auditing claimed implicit computation. All experiments run on a single free Colab GPU; code, raw logs, and analysis scripts are released.

We introduce RGS-SLAM, a robust Gaussian-splatting SLAM framework that replaces the residual-driven densification stage of GS-SLAM with a training-free correspondence-to-Gaussian initialization. Instead of progressively adding Gaussians as residuals reveal missing geometry, RGS-SLAM performs a one-shot triangulation of dense multi-view correspondences derived from DINOv3 descriptors refined through a confidence-aware inlier classifier, generating a well-distributed and structure-aware Gaussian seed prior to optimization. This initialization stabilizes early mapping and accelerates convergence by roughly 20\%, yielding higher rendering fidelity in texture-rich and cluttered scenes while remaining fully compatible with existing GS-SLAM pipelines. Evaluated on the TUM RGB-D and Replica datasets, RGS-SLAM achieves competitive or superior localization and reconstruction accuracy compared with state-of-the-art Gaussian and point-based SLAM systems, sustaining real-time mapping performance at up to 925 FPS.

During music listening, cortical activity encodes both acoustic and expectation-related information. Prior work has shown that ANN representations resemble cortical representations and can serve as supervisory signals for EEG recognition. Here we show that distinguishing acoustic and expectation-related ANN representations as teacher targets improves EEG-based music identification. Models pretrained to predict either representation outperform non-pretrained baselines, and combining them yields complementary gains that exceed strong seed ensembles formed by varying random initializations. These findings show that teacher representation type shapes downstream performance and that representation learning can be guided by neural encoding. This work points toward advances in predictive music cognition and neural decoding. Our expectation representation, computed directly from raw signals without manual labels, reflects predictive structure beyond onset or pitch, enabling investigation of multilayer predictive encoding across diverse stimuli. Its scalability to large, diverse datasets further suggests potential for developing general-purpose EEG models grounded in cortical encoding principles.

Reinforcement learning with verifiable rewards, and Group Relative Policy Optimization (GRPO) in particular, is now run routinely on a supervised checkpoint in the hope of producing a stronger agent. We ask whether it adds skill to a small language and vision-language model web agent at the 4B to 8B scale, or whether it mostly reshapes behavior the supervised model already has. Across a control grid of 18 runs that varies learning rate, KL weight, seed, initialization, and clipping, no configuration credibly improves the success rate of a strong supervised baseline on tasks the agent has largely mastered. On the text track, moderate to high learning rates make it credibly worse. The null holds under paired testing, 25 evaluation seeds, 6 training seeds, changes to the recipe, both text and Set-of-Marks screenshot observations, and scaling the backbone to 8B; the credible harm is a text-track finding and is only nominal under Set-of-Marks. To show that the null reflects the setting and not a broken pipeline, we run the identical harness, reward, and recipe on tasks whose reward is reachable by sampling, and there the success rate rises by 22 points with a paired interval that excludes zero. GRPO therefore helps only when there is headroom to climb, meaning the sampled policy already succeeds more often than the greedy one. We then explain the failure. A middle learning rate degrades the agent and a high one collapses it, and the two regimes form a double dissociation: grafting localizes the degrade regime to the attention and MLP blocks, while the collapse regime cannot be traced to any single group, and the embedding change that dominates the weight movement is causally inert. At 4B, effective rank in the late layers tracks capability in both directions; at 8B the two come apart. This coupling is specific to the smaller model, so we report it as scale-dependent.