Daily Papers

Inferring cellular dynamics from unpaired single-cell snapshots requires modeling both state transitions and population growth or death. Unbalanced dynamic optimal transport (UDOT) addresses this by penalizing growth along transport paths, making the choice of growth penalty a key way to encode biological priors on proliferation and apoptosis. However, existing UDOT solvers either rely on computationally expensive NeuralODE simulations or depend on analytical solutions of conditional paths, restricting their efficiency solely to quadratic penalties, i.e. Wasserstein-Fisher-Rao (WFR) geodesics. To enable an efficient UDOT solver for general growth penalties, we first show that concave growth penalties lead to degenerate solutions where growth and transport are separated. We then introduce Simulation-free Unbalanced Dynamic Optimal transport (SUDO), a simulation-free framework for UDOT with general non-quadratic convex growth penalties. SUDO learns the conditional paths and transport costs, solves the induced semi-coupling problem, and subsequently leverages unbalanced flow matching to achieve a simulation-free solution. On WFR benchmarks, SUDO matches the accuracy of efficient, analytical solution-driven algorithms while outperforming simulation-based methods in computational speed. Beyond WFR, SUDO supports asymmetric penalties that encode proliferation-dominant priors and produce more plausible trajectories and growth estimates on synthetic and single-cell datasets.

We investigate a primal-dual (PD) method for the saddle point problem (SPP) that uses a linear approximation of the primal function instead of the standard proximal step, resulting in a linearized PD (LPD) method. For convex-strongly concave SPP, we observe that the LPD method has a suboptimal dependence on the Lipschitz constant of the primal function. To fix this issue, we combine features of Accelerated Gradient Descent with the LPD method resulting in a single-loop Accelerated Linearized Primal-Dual (ALPD) method. ALPD method achieves the optimal gradient complexity when the SPP has a semi-linear coupling function. We also present an inexact ALPD method for SPPs with a general nonlinear coupling function that maintains the optimal gradient evaluations of the primal parts and significantly improves the gradient evaluations of the coupling term compared to the ALPD method. We verify our findings with numerical experiments.

Deep co-training has been introduced to semi-supervised segmentation and achieves impressive results, yet few studies have explored the working mechanism behind it. In this work, we revisit the core assumption that supports co-training: multiple compatible and conditionally independent views. By theoretically deriving the generalization upper bound, we prove the prediction similarity between two models negatively impacts the model's generalization ability. However, most current co-training models are tightly coupled together and violate this assumption. Such coupling leads to the homogenization of networks and confirmation bias which consequently limits the performance. To this end, we explore different dimensions of co-training and systematically increase the diversity from the aspects of input domains, different augmentations and model architectures to counteract homogenization. Our Diverse Co-training outperforms the state-of-the-art (SOTA) methods by a large margin across different evaluation protocols on the Pascal and Cityscapes. For example. we achieve the best mIoU of 76.2%, 77.7% and 80.2% on Pascal with only 92, 183 and 366 labeled images, surpassing the previous best results by more than 5%.

Counterfactual generation seeks to sample outcomes under a hypothetical intervention or decision using observational data collected under the factual assignment mechanism. We develop a flow-matching approach that combines a sample-split, doubly robust training objective with a learned coupling between observed source outcomes and target outcomes drawn from a fitted conditional outcome model. To enable finite-step generation, we leverage a score-corrected stochastic sampler based on a Gaussian-smoothed interpolation. Our main theoretical contribution is a coupling-sensitive KL bound for constant-step Euler discretization: the error is controlled by moments of the source--target displacement under the chosen coupling, rather than by global uniform regularity of the velocity field, and has near-linear dependence on the ambient dimension. We also establish finite-sample non-parametric guarantees for the learned velocity and score fields when both the conditional outcome model and the source-target coupling are estimated from data. These bounds separate approximation, coupling-replacement, nuisance-estimation, generalization, and Monte Carlo errors and, combined with the sampler analysis, yield an end-to-end guarantee for counterfactual generation. Experiments on synthetic and semi-synthetic image benchmarks support the coupling-dependent theory and show that, at finite discretization budgets, the stochastic sampler can outperform the corresponding deterministic ODE sampler.

Semi-supervised federated learning (SSFL) trains models on clients' unlabeled data using a teacher to generate pseudo-labels, with a small labeled seed dataset on the server. Automatic Speech Recognition (ASR) is particularly fragile here: pseudo-label errors compound across the output sequence and across training rounds into divergence, leaving a large gap to fully-supervised FL. We show that closing this gap turns on two coupled design axes -- the teacher (which model generates the pseudo-labels) and the anchor (the server-side updates on labeled data that stabilize training). On the teacher axis, a per-client online teacher (each client's own evolving model) diverges on its own, but once stabilized it matches or beats the broadcast global teacher (one server model, fixed within a round) -- decisively in-domain and competitively under domain shift. As the seed grows stronger and the online teacher's advantage narrows, a transitioning teacher (global rightarrow online at round r) matches or beats both. On the anchor axis, the server must keep training on labeled data between rounds -- otherwise the online teacher drifts -- and this interleaving, more than the seed model, governs convergence. The two axes are inseparable: aggressive teacher choices pay off only once the anchor stabilizes training, which is highly sensitive to data augmentation and batch size -- the settings that govern how much input and gradient noise the server injects. How much stabilization is needed is domain-dependent, governed by the dispersion of the seed data and its overlap with client data. These findings yield guidelines for SSFL in ASR training, improving over the strongest prior method on 9 of 11 pairs, by 20.8% on average in-domain and 10.0% cross-domain, narrowing the gap to fully-supervised FL.

Semi-supervised semantic segmentation (SSSS) aims to improve segmentation performance by utilizing large amounts of unlabeled data with limited labeled samples. Existing methods often suffer from coupling, where over-reliance on initial labeled data leads to suboptimal learning; confirmation bias, where incorrect predictions reinforce themselves repeatedly; and boundary blur caused by limited boundary-awareness and ambiguous edge cues. To address these issues, we propose CW-BASS, a novel framework for SSSS. In order to mitigate the impact of incorrect predictions, we assign confidence weights to pseudo-labels. Additionally, we leverage boundary-delineation techniques, which, despite being extensively explored in weakly-supervised semantic segmentation (WSSS), remain underutilized in SSSS. Specifically, our method: (1) reduces coupling via a confidence-weighted loss that adjusts pseudo-label influence based on their predicted confidence scores, (2) mitigates confirmation bias with a dynamic thresholding mechanism that learns to filter out pseudo-labels based on model performance, (3) tackles boundary blur using a boundary-aware module to refine segmentation near object edges, and (4) reduces label noise through a confidence decay strategy that progressively refines pseudo-labels during training. Extensive experiments on Pascal VOC 2012 and Cityscapes demonstrate that CW-BASS achieves state-of-the-art performance. Notably, CW-BASS achieves a 65.9% mIoU on Cityscapes under a challenging and underexplored 1/30 (3.3%) split (100 images), highlighting its effectiveness in limited-label settings. Our code is available at https://github.com/psychofict/CW-BASS.

The teacher-student framework, prevalent in semi-supervised semantic segmentation, mainly employs the exponential moving average (EMA) to update a single teacher's weights based on the student's. However, EMA updates raise a problem in that the weights of the teacher and student are getting coupled, causing a potential performance bottleneck. Furthermore, this problem may become more severe when training with more complicated labels such as segmentation masks but with few annotated data. This paper introduces Dual Teacher, a simple yet effective approach that employs dual temporary teachers aiming to alleviate the coupling problem for the student. The temporary teachers work in shifts and are progressively improved, so consistently prevent the teacher and student from becoming excessively close. Specifically, the temporary teachers periodically take turns generating pseudo-labels to train a student model and maintain the distinct characteristics of the student model for each epoch. Consequently, Dual Teacher achieves competitive performance on the PASCAL VOC, Cityscapes, and ADE20K benchmarks with remarkably shorter training times than state-of-the-art methods. Moreover, we demonstrate that our approach is model-agnostic and compatible with both CNN- and Transformer-based models. Code is available at https://github.com/naver-ai/dual-teacher.

In many modern day systems such as information extraction and knowledge management agents, ontologies play a vital role in maintaining the concept hierarchies of the selected domain. However, ontology population has become a problematic process due to its nature of heavy coupling with manual human intervention. With the use of word embeddings in the field of natural language processing, it became a popular topic due to its ability to cope up with semantic sensitivity. Hence, in this study, we propose a novel way of semi-supervised ontology population through word embeddings as the basis. We built several models including traditional benchmark models and new types of models which are based on word embeddings. Finally, we ensemble them together to come up with a synergistic model with better accuracy. We demonstrate that our ensemble model can outperform the individual models.

The objective of this study is to evaluate the potential for History Matching (HM) to tune a climate system with multi-scale dynamics. By considering a toy climate model, namely, the two-scale Lorenz96 model and producing experiments in perfect-model setting, we explore in detail how several built-in choices need to be carefully tested. We also demonstrate the importance of introducing physical expertise in the range of parameters, a priori to running HM. Finally we revisit a classical procedure in climate model tuning, that consists of tuning the slow and fast components separately. By doing so in the Lorenz96 model, we illustrate the non-uniqueness of plausible parameters and highlight the specificity of metrics emerging from the coupling. This paper contributes also to bridging the communities of uncertainty quantification, machine learning and climate modeling, by making connections between the terms used by each community for the same concept and presenting promising collaboration avenues that would benefit climate modeling research.

Distributed Acoustic Sensing (DAS) is an emerging technology for earthquake monitoring and subsurface imaging. The recorded seismic signals by DAS have several distinct characteristics, such as unknown coupling effects, strong anthropogenic noise, and ultra-dense spatial sampling. These aspects differ from conventional seismic data recorded by seismic networks, making it challenging to utilize DAS at present for seismic monitoring. New data analysis algorithms are needed to extract useful information from DAS data. Previous studies on conventional seismic data demonstrated that deep learning models could achieve performance close to human analysts in picking seismic phases. However, phase picking on DAS data is still a difficult problem due to the lack of manual labels. Further, the differences in mathematical structure between these two data formats, i.e., ultra-dense DAS arrays and sparse seismic networks, make model fine-tuning or transfer learning difficult to implement on DAS data. In this work, we design a new approach using semi-supervised learning to solve the phase-picking task on DAS arrays. We use a pre-trained PhaseNet model as a teacher network to generate noisy labels of P and S arrivals on DAS data and apply the Gaussian mixture model phase association (GaMMA) method to refine these noisy labels to build training datasets. We develop a new deep learning model, PhaseNet-DAS, to process the 2D spatial-temporal data of DAS arrays and train the model on DAS data. The new deep learning model achieves high picking accuracy and good earthquake detection performance. We then apply the model to process continuous data and build earthquake catalogs directly from DAS recording. Our approach using semi-supervised learning provides a way to build effective deep learning models for DAS, which have the potential to improve earthquake monitoring using large-scale fiber networks.

Speculative decoding accelerates Large Language Model (LLM) inference by decoupling draft generation from target verification. While recent parallel drafters efficiently propose long token sequences in a single forward pass, they suffer from rapid acceptance decay due to a lack of inter-token dependencies. Furthermore, indiscriminately verifying these extended blocks wastes critical batch capacity on tokens with high rejection risks, severely degrading throughput in high-concurrency serving systems. We introduce DSpark, a speculative decoding framework that unifies high-throughput parallel generation with adaptive, load-aware verification. To maintain draft quality, DSpark utilizes a semi-autoregressive architecture, coupling a parallel backbone with a lightweight sequential module, to introduce intra-block dependency modeling and mitigate suffix decay. To optimize system efficiency, DSpark employs confidence-scheduled verification, dynamically tailoring the verification length for each request based on estimated prefix survival probabilities and engine-specific throughput profiles. On offline benchmarks across diverse domains, DSpark substantially improves the accepted length over state-of-the-art autoregressive and parallel drafters. When deployed within the DeepSeek-V4 serving system under live user traffic, DSpark successfully mitigates verification waste. Compared to the established production baseline (MTP-1), DSpark accelerates per-user generation speeds by 60 to 85 percent at matched throughput levels. More importantly, by preventing severe throughput degradation under strict interactivity constraints, it enables performance tiers that were previously unattainable, shifting the Pareto frontier of our serving system.

Low-bit floating-point formats and semi-structured sparsity are increasingly supported by modern accelerators, yet combining them for LLM activation compression remains challenging: activations contain input-dependent outliers that dominate block scales in FP4 quantization, and directly applying N:M sparsity masks discards moderate values, coupling sparsification loss with quantization error. We introduce SharQ, a training-free inference method that bridges activation sparsity and FP4 quantization through an online sparse--dense decomposition. For each activation tensor, SharQ generates an input-adaptive N:M mask to extract an outlier-dominated sparse backbone, quantizes it to FP4, and defines a dense residual relative to the quantized sparse backbone rather than the unquantized sparse values. A sparse FP4 GEMM processes the backbone while a dense FP4 GEMM compensates for both mask-induced activation loss and sparse-path quantization error. The two paths share a single FP4 weight payload with path-specific scale views, and a fused preparation kernel absorbs mask generation, residual construction, and layer normalization into one operator. SharQ requires no calibration data, retraining, or model-specific tuning. Evaluated on Llama-3.1-8B, Qwen2.5-7B, Qwen3-30B-A3B, and Qwen3-VL-8B, SharQ recovers 43--63% of the NVFP4-to-FP16 accuracy gap across language and vision-language tasks, and generalizes across NVFP4, HiF4, and MXFP4 formats. On an RTX 5090, SharQ delivers 2.2--2.4times latency reduction over FP16 and 1.2--1.4times throughput improvement over FP8 in language model serving, and up to 1.58times speedup on Wan2.2-T2V-A14B video generation when combined with SageAttention. Our code is available at https://github.com/actypedef/SharQ.

Variational auto-encoders are powerful probabilistic models in generative tasks but suffer from generating low-quality samples which are caused by the holes in the prior. We propose the Coupled Variational Auto-Encoder (C-VAE), which formulates the VAE problem as one of Optimal Transport (OT) between the prior and data distributions. The C-VAE allows greater flexibility in priors and natural resolution of the prior hole problem by enforcing coupling between the prior and the data distribution and enables flexible optimization through the primal, dual, and semi-dual formulations of entropic OT. Simulations on synthetic and real data show that the C-VAE outperforms alternatives including VAE, WAE, and InfoVAE in fidelity to the data, quality of the latent representation, and in quality of generated samples.

Learning the underlying dynamics of single cells from snapshot data has gained increasing attention in scientific and machine learning research. The destructive measurement technique and cell proliferation/death result in unpaired and unbalanced data between snapshots, making the learning of the underlying dynamics challenging. In this paper, we propose joint Velocity-Growth Flow Matching (VGFM), a novel paradigm that jointly learns state transition and mass growth of single-cell populations via flow matching. VGFM builds an ideal single-cell dynamics containing velocity of state and growth of mass, driven by a presented two-period dynamic understanding of the static semi-relaxed optimal transport, a mathematical tool that seeks the coupling between unpaired and unbalanced data. To enable practical usage, we approximate the ideal dynamics using neural networks, forming our joint velocity and growth matching framework. A distribution fitting loss is also employed in VGFM to further improve the fitting performance for snapshot data. Extensive experimental results on both synthetic and real datasets demonstrate that VGFM can capture the underlying biological dynamics accounting for mass and state variations over time, outperforming existing approaches for single-cell dynamics modeling.