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Code borrowed from Xinshuo_PyToolbox: https://github.com/xinshuoweng/Xinshuo_PyToolbox
"""
import os
import shutil
import torch
import numpy as np
import random
import time
import copy
import glob, glob2
from torch import nn
class AverageMeter(object):
"""Computes and stores the average and current value"""
def __init__(self):
self.reset()
def reset(self):
self.val = 0
self.avg = 0
self.sum = 0
self.count = 0
self.list = list()
def update(self, val, n=1):
self.val = val
self.sum += val * n
self.count += n
self.avg = self.sum / self.count
self.list.append(val)
def isnparray(nparray_test):
return isinstance(nparray_test, np.ndarray)
def isinteger(integer_test):
if isnparray(integer_test): return False
try: return isinstance(integer_test, int) or int(integer_test) == integer_test
except ValueError: return False
except TypeError: return False
def isfloat(float_test):
return isinstance(float_test, float)
def isscalar(scalar_test):
try: return isinteger(scalar_test) or isfloat(scalar_test)
except TypeError: return False
def islogical(logical_test):
return isinstance(logical_test, bool)
def isstring(string_test):
return isinstance(string_test, str)
def islist(list_test):
return isinstance(list_test, list)
def convert_secs2time(seconds):
'''
format second to human readable way
'''
assert isscalar(seconds), 'input should be a scalar to represent number of seconds'
m, s = divmod(int(seconds), 60)
h, m = divmod(m, 60)
return '[%d:%02d:%02d]' % (h, m, s)
def get_timestring():
return time.strftime('%Y%m%d_%Hh%Mm%Ss')
def recreate_dirs(*dirs):
for d in dirs:
if os.path.exists(d):
shutil.rmtree(d)
os.makedirs(d)
def is_path_valid(pathname):
try:
if not isstring(pathname) or not pathname: return False
except TypeError: return False
else: return True
def is_path_creatable(pathname):
'''
if any previous level of parent folder exists, returns true
'''
if not is_path_valid(pathname): return False
pathname = os.path.normpath(pathname)
pathname = os.path.dirname(os.path.abspath(pathname))
# recursively to find the previous level of parent folder existing
while not is_path_exists(pathname):
pathname_new = os.path.dirname(os.path.abspath(pathname))
if pathname_new == pathname: return False
pathname = pathname_new
return os.access(pathname, os.W_OK)
def is_path_exists(pathname):
try: return is_path_valid(pathname) and os.path.exists(pathname)
except OSError: return False
def is_path_exists_or_creatable(pathname):
try: return is_path_exists(pathname) or is_path_creatable(pathname)
except OSError: return False
def isfile(pathname):
if is_path_valid(pathname):
pathname = os.path.normpath(pathname)
name = os.path.splitext(os.path.basename(pathname))[0]
ext = os.path.splitext(pathname)[1]
return len(name) > 0 and len(ext) > 0
else: return False
def isfolder(pathname):
'''
if '.' exists in the subfolder, the function still justifies it as a folder. e.g., /mnt/dome/adhoc_0.5x/abc is a folder
if '.' exists after all slashes, the function will not justify is as a folder. e.g., /mnt/dome/adhoc_0.5x is NOT a folder
'''
if is_path_valid(pathname):
pathname = os.path.normpath(pathname)
if pathname == './': return True
name = os.path.splitext(os.path.basename(pathname))[0]
ext = os.path.splitext(pathname)[1]
return len(name) > 0 and len(ext) == 0
else: return False
def mkdir_if_missing(input_path):
folder = input_path if isfolder(input_path) else os.path.dirname(input_path)
os.makedirs(folder, exist_ok=True)
def safe_list(input_data, warning=True, debug=True):
'''
copy a list to the buffer for use
parameters:
input_data: a list
outputs:
safe_data: a copy of input data
'''
if debug: assert islist(input_data), 'the input data is not a list'
safe_data = copy.copy(input_data)
return safe_data
def safe_path(input_path, warning=True, debug=True):
'''
convert path to a valid OS format, e.g., empty string '' to '.', remove redundant '/' at the end from 'aa/' to 'aa'
parameters:
input_path: a string
outputs:
safe_data: a valid path in OS format
'''
if debug: assert isstring(input_path), 'path is not a string: %s' % input_path
safe_data = copy.copy(input_path)
safe_data = os.path.normpath(safe_data)
return safe_data
def prepare_seed(rand_seed):
np.random.seed(rand_seed)
random.seed(rand_seed)
torch.manual_seed(rand_seed)
torch.cuda.manual_seed_all(rand_seed)
def initialize_weights(modules):
for m in modules:
if isinstance(m, nn.Conv2d):
nn.init.kaiming_normal_(m.weight, mode='fan_out', nonlinearity='relu')
if m.bias is not None: nn.init.constant_(m.bias, 0)
elif isinstance(m, nn.BatchNorm2d):
nn.init.constant_(m.weight, 1)
if m.bias is not None: nn.init.constant_(m.bias, 0)
elif isinstance(m, nn.Linear):
nn.init.normal_(m.weight, 0, 0.01)
if m.bias is not None: nn.init.constant_(m.bias, 0)
def print_log(print_str, log, same_line=False, display=True):
'''
print a string to a log file
parameters:
print_str: a string to print
log: a opened file to save the log
same_line: True if we want to print the string without a new next line
display: False if we want to disable to print the string onto the terminal
'''
if display:
if same_line: print('{}'.format(print_str), end='')
else: print('{}'.format(print_str))
if same_line: log.write('{}'.format(print_str))
else: log.write('{}\n'.format(print_str))
log.flush()
def find_unique_common_from_lists(input_list1, input_list2, warning=True, debug=True):
'''
find common items from 2 lists, the returned elements are unique. repetitive items will be ignored
if the common items in two elements are not in the same order, the outputs follows the order in the first list
parameters:
input_list1, input_list2: two input lists
outputs:
list_common: a list of elements existing both in list_src1 and list_src2
index_list1: a list of index that list 1 has common items
index_list2: a list of index that list 2 has common items
'''
input_list1 = safe_list(input_list1, warning=warning, debug=debug)
input_list2 = safe_list(input_list2, warning=warning, debug=debug)
common_list = list(set(input_list1).intersection(input_list2))
# find index
index_list1 = []
for index in range(len(input_list1)):
item = input_list1[index]
if item in common_list:
index_list1.append(index)
index_list2 = []
for index in range(len(input_list2)):
item = input_list2[index]
if item in common_list:
index_list2.append(index)
return common_list, index_list1, index_list2
def load_txt_file(file_path, debug=True):
'''
load data or string from text file
'''
file_path = safe_path(file_path)
if debug: assert is_path_exists(file_path), 'text file is not existing at path: %s!' % file_path
with open(file_path, 'r') as file: data = file.read().splitlines()
num_lines = len(data)
file.close()
return data, num_lines
def load_list_from_folder(folder_path, ext_filter=None, depth=1, recursive=False, sort=True, save_path=None, debug=True):
'''
load a list of files or folders from a system path
parameters:
folder_path: root to search
ext_filter: a string to represent the extension of files interested
depth: maximum depth of folder to search, when it's None, all levels of folders will be searched
recursive: False: only return current level
True: return all levels till to the input depth
outputs:
fulllist: a list of elements
num_elem: number of the elements
'''
folder_path = safe_path(folder_path)
if debug: assert isfolder(folder_path), 'input folder path is not correct: %s' % folder_path
if not is_path_exists(folder_path):
print('the input folder does not exist\n')
return [], 0
if debug:
assert islogical(recursive), 'recursive should be a logical variable: {}'.format(recursive)
assert depth is None or (isinteger(depth) and depth >= 1), 'input depth is not correct {}'.format(depth)
assert ext_filter is None or (islist(ext_filter) and all(isstring(ext_tmp) for ext_tmp in ext_filter)) or isstring(ext_filter), 'extension filter is not correct'
if isstring(ext_filter): ext_filter = [ext_filter] # convert to a list
# zxc
fulllist = list()
if depth is None: # find all files recursively
recursive = True
wildcard_prefix = '**'
if ext_filter is not None:
for ext_tmp in ext_filter:
# wildcard = os.path.join(wildcard_prefix, '*' + string2ext_filter(ext_tmp))
wildcard = os.path.join(wildcard_prefix, '*' + ext_tmp)
curlist = glob2.glob(os.path.join(folder_path, wildcard))
if sort: curlist = sorted(curlist)
fulllist += curlist
else:
wildcard = wildcard_prefix
curlist = glob2.glob(os.path.join(folder_path, wildcard))
if sort: curlist = sorted(curlist)
fulllist += curlist
else: # find files based on depth and recursive flag
wildcard_prefix = '*'
for index in range(depth-1): wildcard_prefix = os.path.join(wildcard_prefix, '*')
if ext_filter is not None:
for ext_tmp in ext_filter:
# wildcard = wildcard_prefix + string2ext_filter(ext_tmp)
wildcard = wildcard_prefix + ext_tmp
curlist = glob.glob(os.path.join(folder_path, wildcard))
if sort: curlist = sorted(curlist)
fulllist += curlist
# zxc
else:
wildcard = wildcard_prefix
curlist = glob.glob(os.path.join(folder_path, wildcard))
# print(curlist)
if sort: curlist = sorted(curlist)
fulllist += curlist
if recursive and depth > 1:
newlist, _ = load_list_from_folder(folder_path=folder_path, ext_filter=ext_filter, depth=depth-1, recursive=True)
fulllist += newlist
fulllist = [os.path.normpath(path_tmp) for path_tmp in fulllist]
num_elem = len(fulllist)
# save list to a path
if save_path is not None:
save_path = safe_path(save_path)
if debug: assert is_path_exists_or_creatable(save_path), 'the file cannot be created'
with open(save_path, 'w') as file:
for item in fulllist: file.write('%s\n' % item)
file.close()
return fulllist, num_elem |