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README.md

@@ -32,43 +32,41 @@ computed on a 10% random subset of the data that was not used for training.
 
 | Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |
 | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
-| stromal cell | 108 | 0.98 | 0.96 | 0.98 | 0.96 | 0.00 | 0.94 | 0.98 | 0.99 | 0.99 |
-| pericyte | 93 | 0.99 | 0.99 | 0.99 | 0.98 | 0.00 | 0.98 | 0.98 | 0.99 | 0.99 |
-| macrophage | 25 | 0.92 | 0.98 | 0.98 | 0.98 | 0.00 | 0.98 | 0.98 | 0.98 | 0.98 |
-| supporting cell of vestibular epithelium | 28 | 1.00 | 1.00 | 0.98 | 0.95 | 0.00 | 0.98 | 1.00 | 1.00 | 1.00 |
-| endothelial cell of vascular tree | 12 | 1.00 | 0.86 | 0.96 | 0.79 | 0.00 | 0.80 | 0.92 | 0.96 | 0.96 |
-| melanocyte | 14 | 0.96 | 0.92 | 0.96 | 0.88 | 0.00 | 0.92 | 0.96 | 0.96 | 0.96 |
-| hematopoietic cell | 11 | 0.96 | 0.92 | 0.96 | 0.90 | 0.00 | 0.85 | 0.95 | 1.00 | 1.00 |
-| vascular associated smooth muscle cell | 9 | 0.90 | 0.75 | 0.90 | 0.86 | 0.00 | 0.72 | 0.95 | 0.95 | 0.95 |
-| vestibular dark cell | 5 | 1.00 | 1.00 | 1.00 | 0.67 | 0.00 | 0.91 | 1.00 | 1.00 | 1.00 |
-| neutrophil | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
-| CD4-positive, alpha-beta T cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 0.00 | 1.00 | 1.00 |
+| stromal cell | 96 | 0.99 | 0.96 | 0.98 | 0.96 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |
+| pericyte | 93 | 0.97 | 0.98 | 0.96 | 0.97 | 0.00 | 0.97 | 0.99 | 0.97 | 0.98 |
+| macrophage | 31 | 1.00 | 1.00 | 1.00 | 0.97 | 0.00 | 0.97 | 1.00 | 0.98 | 1.00 |
+| supporting cell of vestibular epithelium | 32 | 1.00 | 0.93 | 0.98 | 0.84 | 0.00 | 0.97 | 1.00 | 1.00 | 1.00 |
+| endothelial cell of vascular tree | 13 | 1.00 | 0.86 | 0.83 | 0.92 | 0.00 | 0.96 | 1.00 | 0.86 | 1.00 |
+| melanocyte | 15 | 1.00 | 0.93 | 0.86 | 0.86 | 0.00 | 0.93 | 1.00 | 0.97 | 0.97 |
+| hematopoietic cell | 13 | 0.78 | 0.92 | 0.73 | 0.80 | 0.00 | 0.81 | 0.92 | 0.88 | 0.92 |
+| vascular associated smooth muscle cell | 11 | 0.96 | 0.74 | 0.96 | 0.67 | 0.00 | 0.87 | 0.96 | 0.96 | 0.96 |
+| vestibular dark cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
+| neutrophil | 1 | 1.00 | 1.00 | 1.00 | 0.00 | 0.00 | 0.50 | 1.00 | 1.00 | 1.00 |
+| CD4-positive, alpha-beta T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
 | intermediate monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
 | mast cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
 | monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
 | CD8-positive, alpha-beta T cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
-| B cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |
 
 The train accuracies are computed on the training data.
 
 | Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |
 | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
-| stromal cell | 1012 | 0.98 | 0.96 | 0.99 | 0.97 | 0.00 | 0.98 | 1.00 | 0.99 | 0.99 |
+| stromal cell | 1024 | 0.98 | 0.94 | 0.99 | 0.98 | 0.00 | 0.98 | 1.00 | 0.99 | 0.99 |
 | pericyte | 758 | 0.98 | 0.98 | 0.99 | 0.98 | 0.00 | 0.99 | 1.00 | 1.00 | 0.99 |
-| macrophage | 251 | 0.97 | 0.98 | 0.99 | 0.96 | 0.00 | 0.99 | 1.00 | 1.00 | 1.00 |
-| supporting cell of vestibular epithelium | 242 | 0.99 | 0.89 | 0.99 | 0.96 | 0.00 | 0.99 | 1.00 | 1.00 | 1.00 |
-| endothelial cell of vascular tree | 140 | 0.92 | 0.81 | 0.97 | 0.90 | 0.00 | 0.90 | 0.98 | 0.97 | 0.98 |
-| melanocyte | 114 | 0.99 | 0.92 | 0.99 | 0.94 | 0.00 | 0.98 | 1.00 | 1.00 | 1.00 |
-| hematopoietic cell | 89 | 0.84 | 0.78 | 0.86 | 0.80 | 0.00 | 0.89 | 0.98 | 0.99 | 0.93 |
-| vascular associated smooth muscle cell | 74 | 0.91 | 0.74 | 0.96 | 0.73 | 0.00 | 0.86 | 0.97 | 0.98 | 0.97 |
-| vestibular dark cell | 44 | 0.93 | 0.90 | 0.97 | 0.63 | 0.00 | 0.98 | 1.00 | 1.00 | 0.98 |
-| neutrophil | 9 | 0.47 | 0.90 | 0.90 | 0.36 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
-| CD4-positive, alpha-beta T cell | 6 | 0.00 | 0.29 | 0.67 | 0.00 | 0.00 | 0.77 | 1.00 | 1.00 | 1.00 |
-| intermediate monocyte | 3 | 0.00 | 0.00 | 0.40 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 0.50 |
-| mast cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.50 | 1.00 | 1.00 | 0.67 |
-| monocyte | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.80 | 1.00 | 1.00 | 1.00 |
-| CD8-positive, alpha-beta T cell | 2 | 0.00 | 0.00 | 0.40 | 0.40 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 |
-| B cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 |
+| macrophage | 245 | 0.98 | 0.99 | 0.99 | 0.96 | 0.00 | 0.98 | 1.00 | 1.00 | 0.99 |
+| supporting cell of vestibular epithelium | 238 | 0.99 | 0.83 | 0.99 | 0.93 | 0.00 | 0.98 | 1.00 | 1.00 | 0.99 |
+| endothelial cell of vascular tree | 139 | 0.94 | 0.81 | 0.96 | 0.91 | 0.00 | 0.92 | 0.98 | 0.96 | 0.97 |
+| melanocyte | 113 | 0.99 | 0.85 | 0.99 | 0.89 | 0.00 | 0.98 | 1.00 | 1.00 | 1.00 |
+| hematopoietic cell | 87 | 0.86 | 0.81 | 0.90 | 0.84 | 0.00 | 0.89 | 0.98 | 0.99 | 0.94 |
+| vascular associated smooth muscle cell | 72 | 0.91 | 0.76 | 0.96 | 0.85 | 0.00 | 0.94 | 0.98 | 0.99 | 0.99 |
+| vestibular dark cell | 49 | 0.97 | 0.82 | 0.95 | 0.56 | 0.00 | 0.96 | 1.00 | 1.00 | 0.98 |
+| neutrophil | 8 | 0.67 | 0.82 | 0.89 | 0.50 | 0.00 | 0.76 | 1.00 | 1.00 | 1.00 |
+| CD4-positive, alpha-beta T cell | 7 | 0.42 | 0.00 | 0.75 | 0.00 | 0.00 | 0.88 | 1.00 | 1.00 | 0.93 |
+| intermediate monocyte | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.80 | 1.00 | 1.00 | 0.50 |
+| mast cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.67 | 1.00 | 1.00 | 0.67 |
+| monocyte | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.57 | 1.00 | 1.00 | 1.00 |
+| CD8-positive, alpha-beta T cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |
 
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