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ENCSR000ENZ/cherimoya.fold_0.log

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ENCSR000ENZ/cherimoya.fold_1.log

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+Epoch	Iteration	Training Time	Validation Time	Training MNLL	Training Count MSE	Validation MNLL	Validation Profile Pearson	Validation Count Pearson	Validation Count MSE	Saved?
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ENCSR000ENZ/cherimoya.fold_3.performance.tsv

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+profile_mnll	profile_jsd	profile_pearson	profile_spearman	count_pearson	count_spearman	count_mse
+1450.2247314453125	0.26577869057655334	0.5565680265426636	0.2956450879573822	0.6820013523101807	0.651059091091156	0.8103817701339722

ENCSR000ENZ/cherimoya.fold_4.fit.json

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+{"n_filters": 128, "name": "cherimoya.fold_4", "batch_size": 64, "reverse_complement": true, "reverse_complement_average": false, "early_stopping": 20, "dtype": "bfloat16", "device": "cuda", "verbose": true, "training_chroms": ["chr1", "chr2", "chr3", "chr4", "chr5", "chr6", "chr8", "chr9", "chr11", "chr12", "chr14", "chr15", "chr16", "chr20", "chr22", "chrY"], "validation_chroms": ["chr10", "chr18"], "sequences": "hg38.fa", "loci": ["train_peaks.fold_4.bed", "valid_peaks.fold_4.bed"], "exclusion_lists": ["https://www.encodeproject.org/files/ENCFF940NTE/@@download/ENCFF940NTE.bed.gz"], "negatives": ["train_nonpeaks.fold_4.bed", "valid_nonpeaks.fold_4.bed"], "signals": ["ENCFF050TSV.bigWig"], "controls": null, "random_state": null, "performance_filename": null, "num_workers": 1, "skip": false}

ENCSR000ENZ/cherimoya.fold_4.performance.tsv

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+profile_mnll	profile_jsd	profile_pearson	profile_spearman	count_pearson	count_spearman	count_mse
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ENCSR000EOA/cherimoya.fold_0.evaluate.json

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+{
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+    "performance_filename": "cherimoya.fold_0.performance.tsv",
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+    "signals": [
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+    "skip": false,
+    "summits": false,
+    "training_chroms": [
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+        "chr4",
+        "chr5",
+        "chr7",
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+        "chr10",
+        "chr11",
+        "chr12",
+        "chr13",
+        "chr14",
+        "chr15",
+        "chr16",
+        "chr17",
+        "chr18",
+        "chr19",
+        "chr21",
+        "chr22",
+        "chrX",
+        "chrY"
+    ],
+    "validation_chroms": [
+        "chr8",
+        "chr20"
+    ],
+    "verbose": true
+}

ENCSR000EOA/cherimoya.fold_0.fit.json

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+{"n_filters": 128, "name": "cherimoya.fold_0", "batch_size": 64, "reverse_complement": true, "reverse_complement_average": false, "early_stopping": 20, "dtype": "bfloat16", "device": "cuda", "verbose": true, "training_chroms": ["chr2", "chr4", "chr5", "chr7", "chr9", "chr10", "chr11", "chr12", "chr13", "chr14", "chr15", "chr16", "chr17", "chr18", "chr19", "chr21", "chr22", "chrX", "chrY"], "validation_chroms": ["chr8", "chr20"], "sequences": "hg38.fa", "loci": ["train_peaks.fold_0.bed", "valid_peaks.fold_0.bed"], "exclusion_lists": ["https://www.encodeproject.org/files/ENCFF940NTE/@@download/ENCFF940NTE.bed.gz"], "negatives": ["train_nonpeaks.fold_0.bed", "valid_nonpeaks.fold_0.bed"], "signals": ["ENCFF987UFJ.bigWig"], "controls": null, "random_state": null, "performance_filename": null, "num_workers": 1, "skip": false}

ENCSR000EOA/cherimoya.fold_0.log

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+Epoch	Iteration	Training Time	Validation Time	Training MNLL	Training Count MSE	Validation MNLL	Validation Profile Pearson	Validation Count Pearson	Validation Count MSE	Saved?
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ENCSR000EOA/cherimoya.fold_0.performance.tsv

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+profile_mnll	profile_jsd	profile_pearson	profile_spearman	count_pearson	count_spearman	count_mse
+482.1864929199219	0.37654638290405273	0.4632870554924011	0.1537049561738968	0.6219712495803833	0.5716661810874939	0.8955707550048828

ENCSR000EOA/cherimoya.fold_1.evaluate.json

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+{
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+    "adam_wd": 0.0,
+    "batch_size": 64,
+    "chroms": [
+        "chr12",
+        "chr17"
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+    "controls": null,
+    "device": "cuda",
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+    "model": "cherimoya.fold_1.torch",
+    "muon_lr": 0.025,
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+    "n_filters": 128,
+    "n_layers": 9,
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+    "name": "cherimoya.fold_1",
+    "negative_ratio": 0.25,
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+        "valid_nonpeaks.fold_1.bed"
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+    "performance_filename": "cherimoya.fold_1.performance.tsv",
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+    "reverse_complement": false,
+    "reverse_complement_average": false,
+    "sequences": "hg38.fa",
+    "signals": [
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+    ],
+    "skip": false,
+    "summits": false,
+    "training_chroms": [
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+        "chr3",
+        "chr4",
+        "chr5",
+        "chr6",
+        "chr7",
+        "chr10",
+        "chr11",
+        "chr13",
+        "chr14",
+        "chr15",
+        "chr18",
+        "chr19",
+        "chr20",
+        "chr21",
+        "chr22",
+        "chrX",
+        "chrY"
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+    "validation_chroms": [
+        "chr12",
+        "chr17"
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+    "verbose": true
+}

ENCSR000EOA/cherimoya.fold_1.fit.json

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ENCSR000EOA/cherimoya.fold_1.log

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+Epoch	Iteration	Training Time	Validation Time	Training MNLL	Training Count MSE	Validation MNLL	Validation Profile Pearson	Validation Count Pearson	Validation Count MSE	Saved?
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ENCSR000EOA/cherimoya.fold_1.performance.tsv

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+profile_mnll	profile_jsd	profile_pearson	profile_spearman	count_pearson	count_spearman	count_mse
+522.0650024414062	0.36940163373947144	0.47177717089653015	0.16017183661460876	0.655492901802063	0.6072821021080017	0.906409740447998

ENCSR000EOA/cherimoya.fold_2.evaluate.json

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+{
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+    "performance_filename": "cherimoya.fold_2.performance.tsv",
+    "random_state": null,
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+    "reverse_complement_average": false,
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+    "signals": [
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+    "summits": false,
+    "training_chroms": [
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+        "chr3",
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+        "chr18",
+        "chr19",
+        "chr20",
+        "chr21",
+        "chrX"
+    ],
+    "validation_chroms": [
+        "chr22",
+        "chr7"
+    ],
+    "verbose": true
+}

ENCSR000EOA/cherimoya.fold_2.fit.json

@@ -0,0 +1 @@
+{"n_filters": 128, "name": "cherimoya.fold_2", "batch_size": 64, "reverse_complement": true, "reverse_complement_average": false, "early_stopping": 20, "dtype": "bfloat16", "device": "cuda", "verbose": true, "training_chroms": ["chr1", "chr2", "chr3", "chr5", "chr6", "chr8", "chr9", "chr10", "chr13", "chr14", "chr16", "chr17", "chr18", "chr19", "chr20", "chr21", "chrX"], "validation_chroms": ["chr22", "chr7"], "sequences": "hg38.fa", "loci": ["train_peaks.fold_2.bed", "valid_peaks.fold_2.bed"], "exclusion_lists": ["https://www.encodeproject.org/files/ENCFF940NTE/@@download/ENCFF940NTE.bed.gz"], "negatives": ["train_nonpeaks.fold_2.bed", "valid_nonpeaks.fold_2.bed"], "signals": ["ENCFF987UFJ.bigWig"], "controls": null, "random_state": null, "performance_filename": null, "num_workers": 1, "skip": false}

ENCSR000EOA/cherimoya.fold_2.log

@@ -0,0 +1,21 @@
+Epoch	Iteration	Training Time	Validation Time	Training MNLL	Training Count MSE	Validation MNLL	Validation Profile Pearson	Validation Count Pearson	Validation Count MSE	Saved?
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ENCSR000EOA/cherimoya.fold_2.performance.tsv

@@ -0,0 +1,2 @@
+profile_mnll	profile_jsd	profile_pearson	profile_spearman	count_pearson	count_spearman	count_mse
+478.9111022949219	0.3777148425579071	0.46562543511390686	0.15230564773082733	0.624181866645813	0.5701503753662109	0.9195047616958618

ENCSR000EOA/cherimoya.fold_3.evaluate.json

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+{
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+    "name": "cherimoya.fold_3",
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+    "negatives": [
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+        "valid_nonpeaks.fold_3.bed"
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+    "performance_filename": "cherimoya.fold_3.performance.tsv",
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+    "sequences": "hg38.fa",
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+    "training_chroms": [
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+        "chr17",
+        "chr19",
+        "chrX",
+        "chrY"
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+    "validation_chroms": [
+        "chr6",
+        "chr21"
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+    "verbose": true
+}

ENCSR000EOA/cherimoya.fold_3.fit.json

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+{"n_filters": 128, "name": "cherimoya.fold_3", "batch_size": 64, "reverse_complement": true, "reverse_complement_average": false, "early_stopping": 20, "dtype": "bfloat16", "device": "cuda", "verbose": true, "training_chroms": ["chr1", "chr2", "chr3", "chr4", "chr7", "chr8", "chr9", "chr11", "chr12", "chr13", "chr15", "chr16", "chr17", "chr19", "chrX", "chrY"], "validation_chroms": ["chr6", "chr21"], "sequences": "hg38.fa", "loci": ["train_peaks.fold_3.bed", "valid_peaks.fold_3.bed"], "exclusion_lists": ["https://www.encodeproject.org/files/ENCFF940NTE/@@download/ENCFF940NTE.bed.gz"], "negatives": ["train_nonpeaks.fold_3.bed", "valid_nonpeaks.fold_3.bed"], "signals": ["ENCFF987UFJ.bigWig"], "controls": null, "random_state": null, "performance_filename": null, "num_workers": 1, "skip": false}

ENCSR000EOA/cherimoya.fold_3.log

@@ -0,0 +1,21 @@
+Epoch	Iteration	Training Time	Validation Time	Training MNLL	Training Count MSE	Validation MNLL	Validation Profile Pearson	Validation Count Pearson	Validation Count MSE	Saved?
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ENCSR000EOA/cherimoya.fold_3.performance.tsv

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+profile_mnll	profile_jsd	profile_pearson	profile_spearman	count_pearson	count_spearman	count_mse
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ENCSR000EOA/cherimoya.fold_4.evaluate.json

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+    "performance_filename": "cherimoya.fold_4.performance.tsv",
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+    "signals": [
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+    "skip": false,
+    "summits": false,
+    "training_chroms": [
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+        "chr3",
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+    "validation_chroms": [
+        "chr10",
+        "chr18"
+    ],
+    "verbose": true
+}

ENCSR000EOA/cherimoya.fold_4.fit.json

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ENCSR000EOA/cherimoya.fold_4.log

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ENCSR000EOA/cherimoya.fold_4.performance.tsv

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+profile_mnll	profile_jsd	profile_pearson	profile_spearman	count_pearson	count_spearman	count_mse
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ENCSR000EOB/cherimoya.fold_0.fit.json

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ENCSR000EOB/cherimoya.fold_1.evaluate.json

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+{
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+    "model": "cherimoya.fold_1.torch",
+    "muon_lr": 0.025,
+    "muon_wd": 0.03,
+    "n_filters": 128,
+    "n_layers": 9,
+    "n_warmup_epochs": 2,
+    "name": "cherimoya.fold_1",
+    "negative_ratio": 0.25,
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+        "valid_nonpeaks.fold_1.bed"
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+    "performance_filename": "cherimoya.fold_1.performance.tsv",
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+        "chr15",
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+        "chr19",
+        "chr20",
+        "chr21",
+        "chr22",
+        "chrX",
+        "chrY"
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+    "validation_chroms": [
+        "chr12",
+        "chr17"
+    ],
+    "verbose": true
+}

ENCSR000EOB/cherimoya.fold_1.log

@@ -0,0 +1,21 @@
+Epoch	Iteration	Training Time	Validation Time	Training MNLL	Training Count MSE	Validation MNLL	Validation Profile Pearson	Validation Count Pearson	Validation Count MSE	Saved?
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ENCSR000EOB/cherimoya.fold_2.evaluate.json

@@ -0,0 +1,76 @@
+{
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+    "adam_wd": 0.0,
+    "batch_size": 64,
+    "chroms": [
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+    "model": "cherimoya.fold_2.torch",
+    "muon_lr": 0.025,
+    "muon_wd": 0.03,
+    "n_filters": 128,
+    "n_layers": 9,
+    "n_warmup_epochs": 2,
+    "name": "cherimoya.fold_2",
+    "negative_ratio": 0.25,
+    "negatives": [
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+        "valid_nonpeaks.fold_2.bed"
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+    "performance_filename": "cherimoya.fold_2.performance.tsv",
+    "random_state": null,
+    "residual_scale": 0.15,
+    "reverse_complement": false,
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+    "sequences": "hg38.fa",
+    "signals": [
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+    "skip": false,
+    "summits": false,
+    "training_chroms": [
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+        "chr2",
+        "chr3",
+        "chr5",
+        "chr6",
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+        "chr9",
+        "chr10",
+        "chr13",
+        "chr14",
+        "chr16",
+        "chr17",
+        "chr18",
+        "chr19",
+        "chr20",
+        "chr21",
+        "chrX"
+    ],
+    "validation_chroms": [
+        "chr22",
+        "chr7"
+    ],
+    "verbose": true
+}

ENCSR000EOB/cherimoya.fold_2.fit.json

@@ -0,0 +1 @@
+{"n_filters": 128, "name": "cherimoya.fold_2", "batch_size": 64, "reverse_complement": true, "reverse_complement_average": false, "early_stopping": 20, "dtype": "bfloat16", "device": "cuda", "verbose": true, "training_chroms": ["chr1", "chr2", "chr3", "chr5", "chr6", "chr8", "chr9", "chr10", "chr13", "chr14", "chr16", "chr17", "chr18", "chr19", "chr20", "chr21", "chrX"], "validation_chroms": ["chr22", "chr7"], "sequences": "hg38.fa", "loci": ["train_peaks.fold_2.bed", "valid_peaks.fold_2.bed"], "exclusion_lists": ["https://www.encodeproject.org/files/ENCFF940NTE/@@download/ENCFF940NTE.bed.gz"], "negatives": ["train_nonpeaks.fold_2.bed", "valid_nonpeaks.fold_2.bed"], "signals": ["ENCFF284GLX.bigWig"], "controls": null, "random_state": null, "performance_filename": null, "num_workers": 1, "skip": false}

ENCSR000EOB/cherimoya.fold_2.performance.tsv

@@ -0,0 +1,2 @@
+profile_mnll	profile_jsd	profile_pearson	profile_spearman	count_pearson	count_spearman	count_mse
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ENCSR000EOB/cherimoya.fold_3.fit.json

@@ -0,0 +1 @@
+{"n_filters": 128, "name": "cherimoya.fold_3", "batch_size": 64, "reverse_complement": true, "reverse_complement_average": false, "early_stopping": 20, "dtype": "bfloat16", "device": "cuda", "verbose": true, "training_chroms": ["chr1", "chr2", "chr3", "chr4", "chr7", "chr8", "chr9", "chr11", "chr12", "chr13", "chr15", "chr16", "chr17", "chr19", "chrX", "chrY"], "validation_chroms": ["chr6", "chr21"], "sequences": "hg38.fa", "loci": ["train_peaks.fold_3.bed", "valid_peaks.fold_3.bed"], "exclusion_lists": ["https://www.encodeproject.org/files/ENCFF940NTE/@@download/ENCFF940NTE.bed.gz"], "negatives": ["train_nonpeaks.fold_3.bed", "valid_nonpeaks.fold_3.bed"], "signals": ["ENCFF284GLX.bigWig"], "controls": null, "random_state": null, "performance_filename": null, "num_workers": 1, "skip": false}

ENCSR000EOB/cherimoya.fold_4.fit.json

@@ -0,0 +1 @@
+{"n_filters": 128, "name": "cherimoya.fold_4", "batch_size": 64, "reverse_complement": true, "reverse_complement_average": false, "early_stopping": 20, "dtype": "bfloat16", "device": "cuda", "verbose": true, "training_chroms": ["chr1", "chr2", "chr3", "chr4", "chr5", "chr6", "chr8", "chr9", "chr11", "chr12", "chr14", "chr15", "chr16", "chr20", "chr22", "chrY"], "validation_chroms": ["chr10", "chr18"], "sequences": "hg38.fa", "loci": ["train_peaks.fold_4.bed", "valid_peaks.fold_4.bed"], "exclusion_lists": ["https://www.encodeproject.org/files/ENCFF940NTE/@@download/ENCFF940NTE.bed.gz"], "negatives": ["train_nonpeaks.fold_4.bed", "valid_nonpeaks.fold_4.bed"], "signals": ["ENCFF284GLX.bigWig"], "controls": null, "random_state": null, "performance_filename": null, "num_workers": 1, "skip": false}

ENCSR000EOB/cherimoya.fold_4.log

@@ -0,0 +1,21 @@
+Epoch	Iteration	Training Time	Validation Time	Training MNLL	Training Count MSE	Validation MNLL	Validation Profile Pearson	Validation Count Pearson	Validation Count MSE	Saved?
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ENCSR000EOH/cherimoya.fold_0.evaluate.json

@@ -0,0 +1,78 @@
+{
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+    "batch_size": 64,
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+    "n_filters": 128,
+    "n_layers": 9,
+    "n_warmup_epochs": 2,
+    "name": "cherimoya.fold_0",
+    "negative_ratio": 0.25,
+    "negatives": [
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+        "valid_nonpeaks.fold_0.bed"
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+    "performance_filename": "cherimoya.fold_0.performance.tsv",
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+    "summits": false,
+    "training_chroms": [
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+        "chr15",
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+        "chr17",
+        "chr18",
+        "chr19",
+        "chr21",
+        "chr22",
+        "chrX",
+        "chrY"
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+    "validation_chroms": [
+        "chr8",
+        "chr20"
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+    "verbose": true
+}

ENCSR000EOH/cherimoya.fold_0.fit.json

@@ -0,0 +1 @@
+{"n_filters": 128, "name": "cherimoya.fold_0", "batch_size": 64, "reverse_complement": true, "reverse_complement_average": false, "early_stopping": 20, "dtype": "bfloat16", "device": "cuda", "verbose": true, "training_chroms": ["chr2", "chr4", "chr5", "chr7", "chr9", "chr10", "chr11", "chr12", "chr13", "chr14", "chr15", "chr16", "chr17", "chr18", "chr19", "chr21", "chr22", "chrX", "chrY"], "validation_chroms": ["chr8", "chr20"], "sequences": "hg38.fa", "loci": ["train_peaks.fold_0.bed", "valid_peaks.fold_0.bed"], "exclusion_lists": ["https://www.encodeproject.org/files/ENCFF940NTE/@@download/ENCFF940NTE.bed.gz"], "negatives": ["train_nonpeaks.fold_0.bed", "valid_nonpeaks.fold_0.bed"], "signals": ["ENCFF961WLA.bigWig"], "controls": null, "random_state": null, "performance_filename": null, "num_workers": 1, "skip": false}

ENCSR000EOH/cherimoya.fold_0.performance.tsv

@@ -0,0 +1,2 @@
+profile_mnll	profile_jsd	profile_pearson	profile_spearman	count_pearson	count_spearman	count_mse
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ENCSR000EOH/cherimoya.fold_1.evaluate.json

@@ -0,0 +1,77 @@
+{
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+    "chroms": [
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+    "model": "cherimoya.fold_1.torch",
+    "muon_lr": 0.025,
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+    "n_filters": 128,
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+    "n_warmup_epochs": 2,
+    "name": "cherimoya.fold_1",
+    "negative_ratio": 0.25,
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+        "valid_nonpeaks.fold_1.bed"
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+    "performance_filename": "cherimoya.fold_1.performance.tsv",
+    "random_state": null,
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+    "reverse_complement": false,
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+    "skip": false,
+    "summits": false,
+    "training_chroms": [
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+        "chr3",
+        "chr4",
+        "chr5",
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+        "chrX",
+        "chrY"
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+    "validation_chroms": [
+        "chr12",
+        "chr17"
+    ],
+    "verbose": true
+}

ENCSR000EOH/cherimoya.fold_1.fit.json

@@ -0,0 +1 @@
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ENCSR000EOH/cherimoya.fold_1.log

@@ -0,0 +1,21 @@
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ENCSR000EOH/cherimoya.fold_2.fit.json

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ENCSR000EOH/cherimoya.fold_2.performance.tsv

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ENCSR000EOH/cherimoya.fold_3.fit.json

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ENCSR000EOH/cherimoya.fold_3.log

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+17	50508	31.217418909072876	0.607006311416626	731.7643432617188	0.6128467321395874	1051.3721923828125	0.5722231268882751	0.6754118	0.8205823302268982	True
+18	53314	31.171505451202393	0.5848336219787598	790.7263793945312	0.977503776550293	1045.5751953125	0.5751761794090271	0.67726004	0.8038016557693481	True
+19	56120	30.530203104019165	0.6056821346282959	787.4326171875	0.8426790833473206	1043.208984375	0.5781639814376831	0.6775716	0.8053515553474426	True

ENCSR000EOH/cherimoya.fold_4.evaluate.json

@@ -0,0 +1,75 @@
+{
+    "adam_lr": 0.001,
+    "adam_wd": 0.0,
+    "batch_size": 64,
+    "chroms": [
+        "chr10",
+        "chr18"
+    ],
+    "controls": null,
+    "device": "cuda",
+    "dtype": "bfloat16",
+    "early_stopping": 20,
+    "exclusion_lists": [
+        "https://www.encodeproject.org/files/ENCFF940NTE/@@download/ENCFF940NTE.bed.gz"
+    ],
+    "expansion": 2,
+    "in_window": 2114,
+    "loci": [
+        "train_peaks.fold_4.bed",
+        "valid_peaks.fold_4.bed"
+    ],
+    "lw_lr": 0.001,
+    "lw_momentum": 0.9,
+    "lw_wd": 0.0,
+    "max_epochs": 20,
+    "max_jitter": 0,
+    "model": "cherimoya.fold_4.torch",
+    "muon_lr": 0.025,
+    "muon_wd": 0.03,
+    "n_filters": 128,
+    "n_layers": 9,
+    "n_warmup_epochs": 2,
+    "name": "cherimoya.fold_4",
+    "negative_ratio": 0.25,
+    "negatives": [
+        "train_nonpeaks.fold_4.bed",
+        "valid_nonpeaks.fold_4.bed"
+    ],
+    "num_workers": 1,
+    "out_window": 1000,
+    "performance_filename": "cherimoya.fold_4.performance.tsv",
+    "random_state": null,
+    "residual_scale": 0.15,
+    "reverse_complement": false,
+    "reverse_complement_average": false,
+    "sequences": "hg38.fa",
+    "signals": [
+        "ENCFF961WLA.bigWig"
+    ],
+    "skip": false,
+    "summits": false,
+    "training_chroms": [
+        "chr1",
+        "chr2",
+        "chr3",
+        "chr4",
+        "chr5",
+        "chr6",
+        "chr8",
+        "chr9",
+        "chr11",
+        "chr12",
+        "chr14",
+        "chr15",
+        "chr16",
+        "chr20",
+        "chr22",
+        "chrY"
+    ],
+    "validation_chroms": [
+        "chr10",
+        "chr18"
+    ],
+    "verbose": true
+}

ENCSR000EOH/cherimoya.fold_4.fit.json

@@ -0,0 +1 @@
+{"n_filters": 128, "name": "cherimoya.fold_4", "batch_size": 64, "reverse_complement": true, "reverse_complement_average": false, "early_stopping": 20, "dtype": "bfloat16", "device": "cuda", "verbose": true, "training_chroms": ["chr1", "chr2", "chr3", "chr4", "chr5", "chr6", "chr8", "chr9", "chr11", "chr12", "chr14", "chr15", "chr16", "chr20", "chr22", "chrY"], "validation_chroms": ["chr10", "chr18"], "sequences": "hg38.fa", "loci": ["train_peaks.fold_4.bed", "valid_peaks.fold_4.bed"], "exclusion_lists": ["https://www.encodeproject.org/files/ENCFF940NTE/@@download/ENCFF940NTE.bed.gz"], "negatives": ["train_nonpeaks.fold_4.bed", "valid_nonpeaks.fold_4.bed"], "signals": ["ENCFF961WLA.bigWig"], "controls": null, "random_state": null, "performance_filename": null, "num_workers": 1, "skip": false}

ENCSR000EOH/cherimoya.fold_4.performance.tsv

@@ -0,0 +1,2 @@
+profile_mnll	profile_jsd	profile_pearson	profile_spearman	count_pearson	count_spearman	count_mse
+988.4027709960938	0.2774263322353363	0.5735683441162109	0.25854071974754333	0.6630110144615173	0.6203355193138123	0.7914794087409973

ENCSR000EOK/cherimoya.fold_0.fit.json

@@ -0,0 +1 @@
+{"n_filters": 128, "name": "cherimoya.fold_0", "batch_size": 64, "reverse_complement": true, "reverse_complement_average": false, "early_stopping": 20, "dtype": "bfloat16", "device": "cuda", "verbose": true, "training_chroms": ["chr2", "chr4", "chr5", "chr7", "chr9", "chr10", "chr11", "chr12", "chr13", "chr14", "chr15", "chr16", "chr17", "chr18", "chr19", "chr21", "chr22", "chrX", "chrY"], "validation_chroms": ["chr8", "chr20"], "sequences": "hg38.fa", "loci": ["train_peaks.fold_0.bed", "valid_peaks.fold_0.bed"], "exclusion_lists": ["https://www.encodeproject.org/files/ENCFF940NTE/@@download/ENCFF940NTE.bed.gz"], "negatives": ["train_nonpeaks.fold_0.bed", "valid_nonpeaks.fold_0.bed"], "signals": ["ENCFF777OTQ.bigWig"], "controls": null, "random_state": null, "performance_filename": null, "num_workers": 1, "skip": false}

ENCSR000EOK/cherimoya.fold_1.performance.tsv

@@ -0,0 +1,2 @@
+profile_mnll	profile_jsd	profile_pearson	profile_spearman	count_pearson	count_spearman	count_mse
+945.1451416015625	0.27914106845855713	0.5746200680732727	0.25633537769317627	0.6497101187705994	0.6146687269210815	0.7156282663345337

ENCSR000EOK/cherimoya.fold_2.performance.tsv

@@ -0,0 +1,2 @@
+profile_mnll	profile_jsd	profile_pearson	profile_spearman	count_pearson	count_spearman	count_mse
+897.4558715820312	0.2844477891921997	0.5677341222763062	0.25021323561668396	0.6296749711036682	0.5940616726875305	0.7112013697624207