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ENCSR000EQE/cherimoya.fold_0.log

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+Epoch	Iteration	Training Time	Validation Time	Training MNLL	Training Count MSE	Validation MNLL	Validation Profile Pearson	Validation Count Pearson	Validation Count MSE	Saved?
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ENCSR000EQE/cherimoya.fold_2.evaluate.json

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+{
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+    "name": "cherimoya.fold_2",
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+}

ENCSR000EQE/cherimoya.fold_3.performance.tsv

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ENCSR000EQE/cherimoya.fold_4.performance.tsv

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ENCSR279SXQ/cherimoya.fold_1.fit.json

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ENCSR279SXQ/cherimoya.fold_1.performance.tsv

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ENCSR279SXQ/cherimoya.fold_3.log

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ENCSR279SXQ/cherimoya.fold_4.fit.json

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+{"n_filters": 128, "name": "cherimoya.fold_4", "batch_size": 64, "reverse_complement": true, "reverse_complement_average": false, "early_stopping": 20, "dtype": "bfloat16", "device": "cuda", "verbose": true, "training_chroms": ["chr1", "chr2", "chr3", "chr4", "chr5", "chr6", "chr8", "chr9", "chr11", "chr12", "chr14", "chr15", "chr16", "chr20", "chr22", "chrY"], "validation_chroms": ["chr10", "chr18"], "sequences": "hg38.fa", "loci": ["train_peaks.fold_4.bed", "valid_peaks.fold_4.bed"], "exclusion_lists": ["https://www.encodeproject.org/files/ENCFF940NTE/@@download/ENCFF940NTE.bed.gz"], "negatives": ["train_nonpeaks.fold_4.bed", "valid_nonpeaks.fold_4.bed"], "signals": ["ENCFF207DCX.bigWig"], "controls": null, "random_state": null, "performance_filename": null, "num_workers": 1, "skip": false}

ENCSR476SDZ/cherimoya.fold_3.log

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ENCSR545KQR/cherimoya.fold_0.log

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ENCSR545KQR/cherimoya.fold_2.fit.json

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ENCSR545KQR/cherimoya.fold_3.fit.json

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ENCSR684KUG/cherimoya.fold_0.log

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ENCSR684KUG/cherimoya.fold_1.evaluate.json

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+{
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+        "chr17"
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+    "verbose": true
+}

ENCSR684KUG/cherimoya.fold_1.log

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ENCSR684KUG/cherimoya.fold_2.fit.json

@@ -0,0 +1 @@
+{"n_filters": 128, "name": "cherimoya.fold_2", "batch_size": 64, "reverse_complement": true, "reverse_complement_average": false, "early_stopping": 20, "dtype": "bfloat16", "device": "cuda", "verbose": true, "training_chroms": ["chr1", "chr2", "chr3", "chr5", "chr6", "chr8", "chr9", "chr10", "chr13", "chr14", "chr16", "chr17", "chr18", "chr19", "chr20", "chr21", "chrX"], "validation_chroms": ["chr22", "chr7"], "sequences": "hg38.fa", "loci": ["train_peaks.fold_2.bed", "valid_peaks.fold_2.bed"], "exclusion_lists": ["https://www.encodeproject.org/files/ENCFF940NTE/@@download/ENCFF940NTE.bed.gz"], "negatives": ["train_nonpeaks.fold_2.bed", "valid_nonpeaks.fold_2.bed"], "signals": ["ENCFF745DCO.bigWig"], "controls": null, "random_state": null, "performance_filename": null, "num_workers": 1, "skip": false}

ENCSR684KUG/cherimoya.fold_4.performance.tsv

@@ -0,0 +1,2 @@
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ENCSR960EJV/cherimoya.fold_1.performance.tsv

@@ -0,0 +1,2 @@
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ENCSR960EJV/cherimoya.fold_2.performance.tsv

@@ -0,0 +1,2 @@
+profile_mnll	profile_jsd	profile_pearson	profile_spearman	count_pearson	count_spearman	count_mse
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ENCSR960EJV/cherimoya.fold_4.evaluate.json

@@ -0,0 +1,75 @@
+{
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+        "chr20",
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+    "validation_chroms": [
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+}