projectxddi commited on
Commit
8548592
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1 Parent(s): 82ffaf6

Add the structures of the Predict page's example proteins

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Files changed (3) hide show
  1. README.md +1 -1
  2. SHA256SUMS +1 -1
  3. esmfold_files.tar.gz +2 -2
README.md CHANGED
@@ -16,7 +16,7 @@ which predicts the residues of a protein that bind metal ions, small molecules,
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  | `esm_if1/esm_if1_gvp4_t16_142M_UR50.pt` | ESM-IF1 inverse-folding model, unchanged copy | [facebookresearch/esm](https://github.com/facebookresearch/esm), MIT |
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  | `baselines/bindEmbed21DL/` | 5 checkpoints (comparison model) | [Rostlab/bindPredict](https://github.com/Rostlab/bindPredict), MIT, `LICENSE` included |
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  | `baselines/bindNode24/` | 5 state dicts (comparison model) | [erckert/bindNode24](https://github.com/erckert/bindNode24), GPL-3.0 |
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- | `esmfold_files.tar.gz` | 4,080 ESMFold v1 structures of the training and test proteins | predicted with [facebook/esmfold_v1](https://huggingface.co/facebook/esmfold_v1) (MIT) |
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  ESM-2 650M and ProtT5-XL half are not copied here. The server loads them from their own repositories at fixed
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  revisions, byte-identical to the files the models were trained with (see `MANIFEST.json`):
 
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  | `esm_if1/esm_if1_gvp4_t16_142M_UR50.pt` | ESM-IF1 inverse-folding model, unchanged copy | [facebookresearch/esm](https://github.com/facebookresearch/esm), MIT |
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  | `baselines/bindEmbed21DL/` | 5 checkpoints (comparison model) | [Rostlab/bindPredict](https://github.com/Rostlab/bindPredict), MIT, `LICENSE` included |
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  | `baselines/bindNode24/` | 5 state dicts (comparison model) | [erckert/bindNode24](https://github.com/erckert/bindNode24), GPL-3.0 |
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+ | `esmfold_files.tar.gz` | 4,090 ESMFold v1 structures: the training and test proteins, and the example proteins of the Predict page | predicted with [facebook/esmfold_v1](https://huggingface.co/facebook/esmfold_v1) (MIT) |
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  ESM-2 650M and ProtT5-XL half are not copied here. The server loads them from their own repositories at fixed
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  revisions, byte-identical to the files the models were trained with (see `MANIFEST.json`):
SHA256SUMS CHANGED
@@ -12,7 +12,7 @@ aff1e45f4dda3472d8a8c8eb10c3cc70d9b1724818f46d3c1a1628c8b2ae6602 baselines/bind
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  a78163516f8ad56446a73f9675386af648e5f85a2abda1d5c7a2597b3f38130d baselines/bindNode24/trained_model_dicts/bindNode24/trained_model_4.state_dict
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- 55816ce6a1ae22fed733e00f8438a79088927d887897c8ffa0c8e1a482707567 esmfold_files.tar.gz
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  2cd3bfecfb1e1da9c6c23bcf17a8223cf1ae0638acc848ef6278bb1adab96ac2 final_model/dna/ms_s0/fold1.pt
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  3a44a0e4f7908464b47d7ba7dab4dea560332d4cca9b8c02641a51c8da9e7e3f final_model/dna/ms_s0/fold2.pt
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  da2e98f542bd755d49ff941a2b50cf1e44ae8c3ad9cb0149cdd962ed42d65e21 final_model/dna/ms_s0/fold3.pt
 
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  2cd3bfecfb1e1da9c6c23bcf17a8223cf1ae0638acc848ef6278bb1adab96ac2 final_model/dna/ms_s0/fold1.pt
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  3a44a0e4f7908464b47d7ba7dab4dea560332d4cca9b8c02641a51c8da9e7e3f final_model/dna/ms_s0/fold2.pt
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  da2e98f542bd755d49ff941a2b50cf1e44ae8c3ad9cb0149cdd962ed42d65e21 final_model/dna/ms_s0/fold3.pt
esmfold_files.tar.gz CHANGED
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