Sync ocampoatac2
Browse files- README.md +38 -0
- config.json +35 -0
- ocampoatac2.pt +3 -0
README.md
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---
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license: bsd-3-clause
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library_name: pyaging
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tags:
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- pyaging
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- aging-clock
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- biology
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- chromatin-accessibility
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---
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# ocampoatac2
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Alternate packaged implementation loaded from the authors' GitHub final_coefs.tsv; it represents the same uncorrected final ATAC-clock target, not a deployable cell-composition-corrected clock.
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|---|---|
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| **Predicts** | chronological age |
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| **Species** | Homo sapiens |
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| **Tissue** | peripheral blood mononuclear cells |
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| **Data type** | chromatin accessibility |
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| **Model type** | elastic net regression |
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| **Year** | 2023 |
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## Use with pyaging
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```python
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import pyaging as pya
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pya.pred.predict_age(adata, ["ocampoatac2"])
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```
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Browse every clock in the [pyaging Clock Catalogue](https://pyaging.readthedocs.io).
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## Citation
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Morandini, F. et al. ATAC-clock: An aging clock based on chromatin accessibility. GeroScience 46, 635-650 (2024).
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https://doi.org/10.1007/s11357-023-00986-0
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config.json
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{
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"approved_by_author": "\u231b",
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"citation": "Morandini, F. et al. ATAC-clock: An aging clock based on chromatin accessibility. GeroScience 46, 635-650 (2024).",
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"citations": 49,
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"citations_date": "2026-07-05",
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"clock_name": "ocampoatac2",
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"data_type": "chromatin accessibility",
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"doi": "https://doi.org/10.1007/s11357-023-00986-0",
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"journal": "GeroScience",
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"last_author": "Alejandro Ocampo",
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"model_type": "elastic net regression",
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"n_features": 380,
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"notes": "Alternate packaged implementation loaded from the authors' GitHub final_coefs.tsv; it represents the same uncorrected final ATAC-clock target, not a deployable cell-composition-corrected clock.",
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"platform": [
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"ATAC-seq"
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],
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"population": "adults",
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"predicts": [
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"chronological age"
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],
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"preprocess": "tpm_norm_log1p",
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"research_only": null,
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"species": "Homo sapiens",
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"tissue": [
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"peripheral blood mononuclear cells"
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],
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"training_target": [
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"chronological age"
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],
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"unit": [
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"years"
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],
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"version": "v0.3.0",
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"year": 2023
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}
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ocampoatac2.pt
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version https://git-lfs.github.com/spec/v1
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oid sha256:18346ea7e35c98fbcdf2d4572eea94a9ea273ee62e5262439ed976330a6517f9
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size 2932325
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