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Correct publication references, input guidance and output units

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  1. README.md +4 -4
  2. config.json +7 -7
  3. pasta.pt +2 -2
README.md CHANGED
@@ -9,7 +9,7 @@ tags:
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  # pasta
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- Human Pasta age-shift classifier applied to within-sample rank-transformed expression. It converts a ridge-logistic older-versus-younger log-odds score to an age score.
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  Model weights retain the original authors' terms; the pyaging software license does not relicense them.
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@@ -20,7 +20,7 @@ Model weights retain the original authors' terms; the pyaging software license d
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  | **Tissue** | multi-tissue |
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  | **Data type** | transcriptomics |
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  | **Model type** | ridge logistic regression |
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- | **Year** | 2025 |
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  ## Use with pyaging
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@@ -34,6 +34,6 @@ Browse every clock in the [pyaging Clock Catalogue](https://pyaging.readthedocs.
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  ## Citation
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- Salignon, J. et al. Pasta, a versatile transcriptomic clock, maps the chemical and genetic determinants of aging and rejuvenation. bioRxiv 2025.06.04.657785 (2025).
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- https://doi.org/10.1101/2025.06.04.657785
 
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  # pasta
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+ Human Pasta age-shift classifier on within-sample rank-transformed expression. Its classifier score is rescaled to a relative age difference on a human-year axis; it is not an absolute chronological-age prediction.
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  Model weights retain the original authors' terms; the pyaging software license does not relicense them.
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  | **Tissue** | multi-tissue |
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  | **Data type** | transcriptomics |
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  | **Model type** | ridge logistic regression |
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+ | **Year** | 2026 |
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  ## Use with pyaging
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  ## Citation
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+ Salignon, J., et al. (2026). Pasta, a versatile transcriptomic clock, maps the chemical and genetic determinants of aging and rejuvenation. Advanced Science, e76740.
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+ https://doi.org/10.1002/advs.76740
config.json CHANGED
@@ -1,16 +1,16 @@
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  {
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  "approved_by_author": "\u2705",
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- "citation": "Salignon, J. et al. Pasta, a versatile transcriptomic clock, maps the chemical and genetic determinants of aging and rejuvenation. bioRxiv 2025.06.04.657785 (2025).",
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- "citations": 1,
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- "citations_date": "2026-07-05",
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  "clock_name": "pasta",
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  "data_type": "transcriptomics",
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- "doi": "https://doi.org/10.1101/2025.06.04.657785",
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- "journal": "bioRxiv",
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  "last_author": "Christian G. Riedel",
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  "model_type": "ridge logistic regression",
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  "n_features": 8113,
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- "notes": "Human Pasta age-shift classifier applied to within-sample rank-transformed expression. It converts a ridge-logistic older-versus-younger log-odds score to an age score.",
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  "platform": [
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  "RNA-seq",
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  "gene expression microarray"
@@ -34,5 +34,5 @@
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  "years"
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  ],
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  "version": "0.5.7",
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- "year": 2025
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  }
 
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  {
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  "approved_by_author": "\u2705",
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+ "citation": "Salignon, J., et al. (2026). Pasta, a versatile transcriptomic clock, maps the chemical and genetic determinants of aging and rejuvenation. Advanced Science, e76740.",
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+ "citations": 2,
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+ "citations_date": "2026-10-02",
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  "clock_name": "pasta",
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  "data_type": "transcriptomics",
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+ "doi": "https://doi.org/10.1002/advs.76740",
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+ "journal": "Advanced Science",
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  "last_author": "Christian G. Riedel",
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  "model_type": "ridge logistic regression",
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  "n_features": 8113,
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+ "notes": "Human Pasta age-shift classifier on within-sample rank-transformed expression. Its classifier score is rescaled to a relative age difference on a human-year axis; it is not an absolute chronological-age prediction.",
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  "platform": [
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  "RNA-seq",
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  "gene expression microarray"
 
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  "years"
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  ],
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  "version": "0.5.7",
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+ "year": 2026
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  }
pasta.pt CHANGED
@@ -1,3 +1,3 @@
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- size 353557
 
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  version https://git-lfs.github.com/spec/v1
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