pastamouse / config.json
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Correct publication references, input guidance and output units
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{
"approved_by_author": "\u2705",
"citation": "Salignon, J., et al. (2026). Pasta, a versatile transcriptomic clock, maps the chemical and genetic determinants of aging and rejuvenation. Advanced Science, e76740.",
"citations": 2,
"citations_date": "2026-10-02",
"clock_name": "pastamouse",
"data_type": "transcriptomics",
"doi": "https://doi.org/10.1002/advs.76740",
"journal": "Advanced Science",
"last_author": "Christian G. Riedel",
"model_type": "orthologue-transferred ridge logistic regression",
"n_features": 1600,
"notes": "Mouse application of the human Pasta model after one-to-one orthologue mapping, rank transformation, and median imputation of missing genes. The output is a human-year-scaled relative age difference, not mouse chronological age.",
"platform": [
"RNA-seq",
"gene expression microarray"
],
"population": "human, age unspecified",
"postprocess": "scale_and_shift",
"predicts": [
"transcriptomic age"
],
"preprocess": "median_fill_and_rank_normalization",
"reference_values": true,
"research_only": null,
"species": "Mus musculus",
"tissue": [
"multi-tissue"
],
"training_target": [
"age ordering"
],
"unit": [
"years"
],
"version": "0.5.7",
"year": 2026
}