Sync pipekelasticnet
Browse files- README.md +38 -0
- config.json +37 -0
- pipekelasticnet.pt +3 -0
README.md
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---
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license: bsd-3-clause
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library_name: pyaging
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tags:
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- pyaging
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- aging-clock
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- biology
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- dna-methylation
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---
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# pipekelasticnet
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Pan-tissue, cross-platform elastic-net chronological-age clock trained on all eligible CpGs; 239 CpGs retained non-zero coefficients.
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|---|---|
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| **Predicts** | chronological age |
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| **Species** | Homo sapiens |
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| **Tissue** | multi-tissue |
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| **Data type** | DNA methylation |
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| **Model type** | elastic net regression |
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| **Year** | 2022 |
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## Use with pyaging
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```python
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import pyaging as pya
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pya.pred.predict_age(adata, ["pipekelasticnet"])
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```
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Browse every clock in the [pyaging Clock Catalogue](https://pyaging.readthedocs.io).
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## Citation
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Pipek, Orsolya Anna, and István Csabai. "A revised multi-tissue, multi-platform epigenetic clock model for methylation array data." Journal of Mathematical Chemistry 61 (2023): 376–388.
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https://doi.org/10.1007/s10910-022-01381-4
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config.json
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{
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"approved_by_author": "\u2705",
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"citation": "Pipek, Orsolya Anna, and Istv\u00e1n Csabai. \"A revised multi-tissue, multi-platform epigenetic clock model for methylation array data.\" Journal of Mathematical Chemistry 61 (2023): 376\u2013388.",
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"citations": 2,
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"citations_date": "2026-07-05",
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"clock_name": "pipekelasticnet",
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"data_type": "DNA methylation",
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"doi": "https://doi.org/10.1007/s10910-022-01381-4",
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"journal": "Journal of Mathematical Chemistry",
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"last_author": "Istv\u00e1n Csabai",
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"model_type": "elastic net regression",
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"n_features": 239,
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"notes": "Pan-tissue, cross-platform elastic-net chronological-age clock trained on all eligible CpGs; 239 CpGs retained non-zero coefficients.",
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"platform": [
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"Illumina 27K",
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"Illumina 450K",
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"Illumina EPIC"
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],
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"population": "all ages",
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"postprocess": "anti_log_linear",
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"predicts": [
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"chronological age"
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],
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"research_only": null,
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"species": "Homo sapiens",
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"tissue": [
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"multi-tissue"
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],
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"training_target": [
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"chronological age"
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],
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"unit": [
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"years"
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],
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"version": "v0.3.0",
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"year": 2022
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}
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pipekelasticnet.pt
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version https://git-lfs.github.com/spec/v1
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oid sha256:911902667533fe283baedf0117ff86a067d5d908f8794606dfab719010011af3
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size 11109
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