Sync stubbs
Browse files- README.md +38 -0
- config.json +44 -0
- stubbs.pt +3 -0
README.md
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---
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license: bsd-3-clause
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library_name: pyaging
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tags:
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- pyaging
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- aging-clock
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- biology
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- dna-methylation
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---
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# stubbs
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Mouse multi-tissue RRBS age predictor: 17,992 common input loci are normalized and reduced to 329 nonzero clock sites, then quadratically calibrated.
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|---|---|
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| **Predicts** | chronological age |
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| **Species** | Mus musculus |
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| **Tissue** | multi-tissue, liver, lung, heart, brain cortex, skeletal muscle, cerebellum, spleen |
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| **Data type** | DNA methylation |
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| **Model type** | quadratically calibrated elastic net regression |
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| **Year** | 2017 |
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## Use with pyaging
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```python
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import pyaging as pya
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pya.pred.predict_age(adata, ["stubbs"])
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```
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Browse every clock in the [pyaging Clock Catalogue](https://pyaging.readthedocs.io).
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## Citation
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Stubbs, T. M., et al. “Multi-tissue DNA methylation age predictor in mouse.” Genome Biology 18: 68 (2017).
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https://doi.org/10.1186/s13059-017-1203-5
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config.json
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{
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"approved_by_author": "\u231b",
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"citation": "Stubbs, T. M., et al. \u201cMulti-tissue DNA methylation age predictor in mouse.\u201d Genome Biology 18: 68 (2017).",
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"citations": 430,
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"citations_date": "2026-07-05",
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"clock_name": "stubbs",
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"data_type": "DNA methylation",
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"doi": "https://doi.org/10.1186/s13059-017-1203-5",
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"journal": "Genome Biology",
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"last_author": "Wolf Reik",
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"model_type": "quadratically calibrated elastic net regression",
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"n_features": 17992,
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"notes": "Mouse multi-tissue RRBS age predictor: 17,992 common input loci are normalized and reduced to 329 nonzero clock sites, then quadratically calibrated.",
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"platform": [
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"RRBS"
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],
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"population": "mice",
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"postprocess": "stubbs",
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"predicts": [
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"chronological age"
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],
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"preprocess": "quantile_normalization_and_scale_with_gold_standard",
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"reference_values": true,
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"research_only": null,
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"species": "Mus musculus",
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"tissue": [
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"multi-tissue",
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"liver",
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"lung",
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"heart",
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"brain cortex",
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"skeletal muscle",
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"cerebellum",
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"spleen"
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],
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"training_target": [
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"chronological age"
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],
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"unit": [
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"months"
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],
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"version": "v0.3.0",
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"year": 2017
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}
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stubbs.pt
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version https://git-lfs.github.com/spec/v1
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oid sha256:f695cbdca56e28f46928e25dddaff47603730207ab88c73421b40021a80cb8a4
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size 766949
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