Publish ClinicalCode CT and MRI checkpoints

LICENSE-ClinicalCode

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+MIT License
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LICENSE-MeWM.md

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LICENSE-Raidionics

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+BSD 2-Clause License
+
+Copyright (c) 2023, David Bouget
+
+Redistribution and use in source and binary forms, with or without
+modification, are permitted provided that the following conditions are met:
+
+1. Redistributions of source code must retain the above copyright notice, this
+   list of conditions and the following disclaimer.
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+2. Redistributions in binary form must reproduce the above copyright notice,
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+   and/or other materials provided with the distribution.
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+OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

README.md

@@ -1,3 +1,60 @@
 ---
-license: apache-2.0
+language:
+- en
+tags:
+- clinicalcode
+- medical-imaging
+- segmentation
+- ct
+- mri
+license: other
+license_name: per-artifact-licenses
+license_link: https://huggingface.co/qicq1c/ClinicalCode#licenses
 ---
+
+# ClinicalCode
+
+Checkpoints for **Animating the Clinical Source Code of Disease Progression for Medical World Models**.
+
+[Project page](https://qic999.github.io/projects/ClinicalCode/) · [Code and commands](https://github.com/qic999/ClinicalCode)
+
+## Checkpoints
+
+| File | Function | Source |
+| --- | --- | --- |
+| [difftumor_hcc_fold0.pt](https://huggingface.co/qicq1c/ClinicalCode/resolve/main/difftumor_hcc_fold0.pt) | CT tumor segmentation within a supplied liver mask | HCC fold-0 DynUNet used in our experiments, based on [DiffTumor](https://github.com/MrGiovanni/DiffTumor) / [MeWM](https://github.com/scott-yjyang/MeWM) |
+| [ct_decoder.freeze.json](https://huggingface.co/qicq1c/ClinicalCode/resolve/main/ct_decoder.freeze.json) | CT treatment-action decoding | ClinicalCode frozen Lingshu-I-8B decoder; identical to the decoder bundled with the public CT case |
+| [Raidionics-MRI_TumorCE_Postop-v13.zip](https://huggingface.co/qicq1c/ClinicalCode/resolve/main/Raidionics-MRI_TumorCE_Postop-v13.zip) | MRI enhancing-tumor segmentation | Unmodified [Raidionics v1.3 archive](https://github.com/raidionics/Raidionics-models/releases/download/v1.3.0-rc/Raidionics-MRI_TumorCE_Postop-v13.zip) |
+| [Raidionics-MRI_Cavity-v13.zip](https://huggingface.co/qicq1c/ClinicalCode/resolve/main/Raidionics-MRI_Cavity-v13.zip) | MRI resection-cavity segmentation | Unmodified [Raidionics v1.3 archive](https://github.com/raidionics/Raidionics-models/releases/download/v1.3.0-rc/Raidionics-MRI_Cavity-v13.zip) |
+
+## Download
+
+```bash
+python -m pip install huggingface_hub
+hf download qicq1c/ClinicalCode difftumor_hcc_fold0.pt --local-dir models/difftumor
+hf download qicq1c/ClinicalCode ct_decoder.freeze.json --local-dir models/decoder
+hf download qicq1c/ClinicalCode \
+  Raidionics-MRI_TumorCE_Postop-v13.zip Raidionics-MRI_Cavity-v13.zip \
+  --local-dir models/raidionics/archives
+unzip -q models/raidionics/archives/Raidionics-MRI_TumorCE_Postop-v13.zip -d models/raidionics
+unzip -q models/raidionics/archives/Raidionics-MRI_Cavity-v13.zip -d models/raidionics
+```
+
+File hashes are recorded in [SHA256SUMS](https://huggingface.co/qicq1c/ClinicalCode/blob/main/SHA256SUMS). The frozen language models are available from their original Hugging Face repositories, including [Lingshu-I-8B](https://huggingface.co/lingshu-medical-mllm/Lingshu-I-8B).
+
+## Licenses
+
+- ClinicalCode decoder: [MIT](https://huggingface.co/qicq1c/ClinicalCode/blob/main/LICENSE-ClinicalCode).
+- HCC DynUNet checkpoint: retained with the [MeWM CC BY-NC 4.0 license](https://huggingface.co/qicq1c/ClinicalCode/blob/main/LICENSE-MeWM.md). Original [MeWM license](https://github.com/scott-yjyang/MeWM/blob/63bb931102254cb81dcd6ee6bdd86eeedeccf9d3/LICENSE.md).
+- Raidionics model archives: [BSD-2-Clause](https://huggingface.co/qicq1c/ClinicalCode/blob/main/LICENSE-Raidionics), copyright David Bouget. Original [model repository](https://github.com/raidionics/Raidionics-models).
+
+## Citation
+
+```bibtex
+@misc{chen2026clinicalcode,
+  title  = {Animating the Clinical Source Code of Disease Progression for Medical World Models},
+  author = {Chen, Qi and Yuille, Alan L. and Chen, Jieneng},
+  year   = {2026},
+  url    = {https://github.com/qic999/ClinicalCode}
+}
+```

Raidionics-MRI_Cavity-v13.zip

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+oid sha256:3edeb272fffc0e85c8575734214c514f9a4a9683de9071d63a1f7e65792c5523
+size 1744474379

Raidionics-MRI_TumorCE_Postop-v13.zip

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+oid sha256:76487d6ebac73f6eaf1dca37c8fa12fc69b04e39f8946c6ee20fe1a19de9f003
+size 1308085403

SHA256SUMS

@@ -0,0 +1,4 @@
+cc36b832b1dcbb48123103aaaf9580b49e3551a550c17c6afe8a249eb86c1d39  difftumor_hcc_fold0.pt
+2c793585169599ff60827ffc5a825833c359c0e9e6f701685c856f141475def5  ct_decoder.freeze.json
+76487d6ebac73f6eaf1dca37c8fa12fc69b04e39f8946c6ee20fe1a19de9f003  Raidionics-MRI_TumorCE_Postop-v13.zip
+3edeb272fffc0e85c8575734214c514f9a4a9683de9071d63a1f7e65792c5523  Raidionics-MRI_Cavity-v13.zip

difftumor_hcc_fold0.pt

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+oid sha256:cc36b832b1dcbb48123103aaaf9580b49e3551a550c17c6afe8a249eb86c1d39
+size 66177278