-
docs: update citation with live bioRxiv DOI 10.64898/2026.05.29.728379
-
refresh: rename class_names inactive -> background in ensemble_test_eval
-
docs: rename inactive -> background in AMP MODEL_REGISTRY
-
Refresh AMP ensemble: 4 new MCC-weighted members on MIC-only DBAASP
AMP prediction ensemble retrained on CLSI MIC-only DBAASP (11,026 active peptides) with the leakage fix. Members selected by validation MCC; test set never consulted during construction.
Removed (previous release):
Prediction/AMP/GRU_L_260226_SMILES.pt
Prediction/AMP/LSTM_L_260227_HELM.pt
Prediction/AMP/GCN_L_260227_HELM.pt
Prediction/AMP/MPNN_L_260226_SMILES.pt
Added (new ensemble, 260428/260429):
Prediction/AMP/LSTM_L_260428_SMILES.pt (val MCC 0.6121)
Prediction/AMP/LSTM_M_260429_HELM.pt (val MCC 0.6021)
Prediction/AMP/GCN_L_260429_HELM.pt (val MCC 0.5136)
Prediction/AMP/GCN_L_260428_SMILES.pt (val MCC 0.4791)
Held-out test (weighted vote, default): Acc 0.7421 / Macro-F1 0.6092 / MCC 0.6216.
Generation models unchanged.
-
docs: fix GRU_L_260226_SMILES.pt size to actual 614 MB
-
docs: UTF-8 author name
-
docs: bioRxiv citation with DOI placeholder
-
fix: use @misc citation (pre-bioRxiv)
-
docs: update title and citation to bioRxiv preprint format
-
docs: add generated-data link to Related Resources
-
docs: fix GitHub URL to wqx1999/PepForge, simplify README
-
docs: update README - replace download_models.py with install.py
-
Add model card
-
Upload folder using huggingface_hub
-
initial commit
