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Refresh AMP ensemble: 4 new MCC-weighted members on MIC-only DBAASP
AMP prediction ensemble retrained on CLSI MIC-only DBAASP (11,026 active peptides) with the leakage fix. Members selected by validation MCC; test set never consulted during construction.
Removed (previous release):
Prediction/AMP/GRU_L_260226_SMILES.pt
Prediction/AMP/LSTM_L_260227_HELM.pt
Prediction/AMP/GCN_L_260227_HELM.pt
Prediction/AMP/MPNN_L_260226_SMILES.pt
Added (new ensemble, 260428/260429):
Prediction/AMP/LSTM_L_260428_SMILES.pt (val MCC 0.6121)
Prediction/AMP/LSTM_M_260429_HELM.pt (val MCC 0.6021)
Prediction/AMP/GCN_L_260429_HELM.pt (val MCC 0.5136)
Prediction/AMP/GCN_L_260428_SMILES.pt (val MCC 0.4791)
Held-out test (weighted vote, default): Acc 0.7421 / Macro-F1 0.6092 / MCC 0.6216.
Generation models unchanged.
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