Image Classification
timm
PyTorch
histopathology
medical-imaging
swin-transformer
computational-pathology
colorectal-cancer
digital-pathology
gradcam
explainable-ai
Eval Results (legacy)
Instructions to use rarfileexe/X-Pathology-Colorectal-Tissue-Classifier-CTransPath-Backbone with libraries, inference providers, notebooks, and local apps. Follow these links to get started.
- Libraries
- timm
How to use rarfileexe/X-Pathology-Colorectal-Tissue-Classifier-CTransPath-Backbone with timm:
import timm model = timm.create_model("hf-hub:rarfileexe/X-Pathology-Colorectal-Tissue-Classifier-CTransPath-Backbone", pretrained=True) - Notebooks
- Google Colab
- Kaggle
Upload 13 files
Browse files- .gitattributes +10 -0
- gradcam_output/Background_gradcam.png +3 -0
- gradcam_output/Cancer-Associated Stroma_gradcam.png +3 -0
- gradcam_output/Cancer-Associated Stroma_prediction.json +96 -0
- gradcam_output/Colorectal Adenocarcinoma (Tumour)2_gradcam.png +3 -0
- gradcam_output/Colorectal Adenocarcinoma (Tumour)_gradcam.png +3 -0
- gradcam_output/Colorectal Adenocarcinoma (Tumour)_prediction.json +96 -0
- gradcam_output/Debris Necrosis_gradcam.png +3 -0
- gradcam_output/Lymphocytes_gradcam.png +3 -0
- gradcam_output/Mucus_gradcam.png +3 -0
- gradcam_output/Normal Colon Mucosa_gradcam.png +3 -0
- gradcam_output/Smooth Muscle_gradcam.png +3 -0
- gradcam_output/T1_gradcam.png +3 -0
- gradcam_output/batch_inference_summary.json +972 -0
.gitattributes
CHANGED
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@@ -34,3 +34,13 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
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*.zst filter=lfs diff=lfs merge=lfs -text
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*tfevents* filter=lfs diff=lfs merge=lfs -text
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confusion_matrix_v6.png filter=lfs diff=lfs merge=lfs -text
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*.zst filter=lfs diff=lfs merge=lfs -text
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*tfevents* filter=lfs diff=lfs merge=lfs -text
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confusion_matrix_v6.png filter=lfs diff=lfs merge=lfs -text
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gradcam_output/Background_gradcam.png filter=lfs diff=lfs merge=lfs -text
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gradcam_output/Cancer-Associated[[:space:]]Stroma_gradcam.png filter=lfs diff=lfs merge=lfs -text
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gradcam_output/Colorectal[[:space:]]Adenocarcinoma[[:space:]](Tumour)_gradcam.png filter=lfs diff=lfs merge=lfs -text
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gradcam_output/Colorectal[[:space:]]Adenocarcinoma[[:space:]](Tumour)2_gradcam.png filter=lfs diff=lfs merge=lfs -text
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gradcam_output/Debris[[:space:]][[:space:]]Necrosis_gradcam.png filter=lfs diff=lfs merge=lfs -text
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gradcam_output/Lymphocytes_gradcam.png filter=lfs diff=lfs merge=lfs -text
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gradcam_output/Mucus_gradcam.png filter=lfs diff=lfs merge=lfs -text
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gradcam_output/Normal[[:space:]]Colon[[:space:]]Mucosa_gradcam.png filter=lfs diff=lfs merge=lfs -text
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| 45 |
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gradcam_output/Smooth[[:space:]]Muscle_gradcam.png filter=lfs diff=lfs merge=lfs -text
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gradcam_output/T1_gradcam.png filter=lfs diff=lfs merge=lfs -text
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gradcam_output/Background_gradcam.png
ADDED
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Git LFS Details
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gradcam_output/Cancer-Associated Stroma_gradcam.png
ADDED
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Git LFS Details
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gradcam_output/Cancer-Associated Stroma_prediction.json
ADDED
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@@ -0,0 +1,96 @@
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{
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"predicted_index": 7,
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"rank": 4,
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"class_name": "TUM",
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"description": "Colorectal Adenocarcinoma (Tumour)",
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}
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],
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"gradcam_info": {
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"target_class": "STR",
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"target_description": "Cancer-Associated Stroma",
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"target_confidence": 0.8029147386550903,
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"method": "gradcam++",
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"used_fallback": false,
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"saved_figure_path": "gradcam_output\\Cancer-Associated Stroma_gradcam.png"
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| 95 |
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}
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| 96 |
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}
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gradcam_output/Colorectal Adenocarcinoma (Tumour)2_gradcam.png
ADDED
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Git LFS Details
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gradcam_output/Colorectal Adenocarcinoma (Tumour)_gradcam.png
ADDED
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Git LFS Details
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gradcam_output/Colorectal Adenocarcinoma (Tumour)_prediction.json
ADDED
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{
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|
| 95 |
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}
|
| 96 |
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}
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gradcam_output/Debris Necrosis_gradcam.png
ADDED
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Git LFS Details
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gradcam_output/Lymphocytes_gradcam.png
ADDED
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Git LFS Details
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gradcam_output/Mucus_gradcam.png
ADDED
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Git LFS Details
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gradcam_output/Normal Colon Mucosa_gradcam.png
ADDED
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Git LFS Details
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gradcam_output/Smooth Muscle_gradcam.png
ADDED
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Git LFS Details
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gradcam_output/T1_gradcam.png
ADDED
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Git LFS Details
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gradcam_output/batch_inference_summary.json
ADDED
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@@ -0,0 +1,972 @@
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