saarantras1 commited on
Commit
365ec0b
·
verified ·
1 Parent(s): 6fe4b2f

Use vcf_predict.py strand convention for RC averaging

Browse files
Files changed (1) hide show
  1. README.md +5 -0
README.md CHANGED
@@ -40,6 +40,11 @@ model directly: they select the ensemble that did not train on your query's
40
  chromosome, and they add the MPRA vector context and average over both strands.
41
  Skipping either step returns plausible-looking but wrong numbers instead of an error.
42
 
 
 
 
 
 
43
  MPAC covers autosomes only; `from_pretrained` raises on chrX, chrY and anything else
44
  with no held-out fold.
45
 
 
40
  chromosome, and they add the MPRA vector context and average over both strands.
41
  Skipping either step returns plausible-looking but wrong numbers instead of an error.
42
 
43
+ `predict` follows `vcf_predict.py` from the upstream code base, which generated the
44
+ published predictions: the reverse strand is the reverse complement of the 200 bp
45
+ insert placed back in the forward-orientation vector, matching the assay, rather
46
+ than a reverse complement of the whole 600 bp construct.
47
+
48
  MPAC covers autosomes only; `from_pretrained` raises on chrX, chrY and anything else
49
  with no held-out fold.
50