Use vcf_predict.py strand convention for RC averaging
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README.md
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@@ -40,6 +40,11 @@ model directly: they select the ensemble that did not train on your query's
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chromosome, and they add the MPRA vector context and average over both strands.
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Skipping either step returns plausible-looking but wrong numbers instead of an error.
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MPAC covers autosomes only; `from_pretrained` raises on chrX, chrY and anything else
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with no held-out fold.
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chromosome, and they add the MPRA vector context and average over both strands.
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Skipping either step returns plausible-looking but wrong numbers instead of an error.
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`predict` follows `vcf_predict.py` from the upstream code base, which generated the
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published predictions: the reverse strand is the reverse complement of the 200 bp
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insert placed back in the forward-orientation vector, matching the assay, rather
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than a reverse complement of the whole 600 bp construct.
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MPAC covers autosomes only; `from_pretrained` raises on chrX, chrY and anything else
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with no held-out fold.
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