readCtrl_lambda / code /interface /old /annotators.py
mshahidul
Initial commit of readCtrl code without large models
030876e
Raw
History Blame Contribute Delete
7.27 kB
import gradio as gr
import json
import random
import os
from datetime import datetime
# --- PATH CONFIGURATION ---
DATA_PATH = "/home/mshahidul/readctrl/data/data_annotator_data/crowdsourcing_input_en_v2.json"
SAVE_ROOT = "/home/mshahidul/readctrl/data/annotators_validate_data"
QUESTIONS_FILE = "/home/mshahidul/readctrl/code/interface/sp50_questions.json"
# --- SESSION CONFIGURATION ---
NUM_QUESTIONS = 30
NUM_DUPLICATES = 4
NUM_LITERACY_QUERIES = 10
DUPLICATE_INTERVAL = 8
# --- ANNOTATION GUIDE TEXT ---
GUIDE_HTML = """
<div style="background-color: #f9f9f9; padding: 15px; border-left: 6px solid #2196F3; border-radius: 4px;">
<h3>Rating Guide: Medical Text Difficulty</h3>
<p>Please rate the difficulty of the documents based on the following scale:</p>
<table style="width:100%; border-collapse: collapse; text-align: left;">
<tr style="background-color: #e3f2fd;">
<th style="padding: 8px; border: 1px solid #ddd;">Score</th>
<th style="padding: 8px; border: 1px solid #ddd;">Description</th>
</tr>
<tr>
<td style="padding: 8px; border: 1px solid #ddd;"><b>1 - 2</b></td>
<td style="padding: 8px; border: 1px solid #ddd;"><b>Very Easy:</b> Clear language, no medical jargon. Like a 5th-grade textbook.</td>
</tr>
<tr>
<td style="padding: 8px; border: 1px solid #ddd;"><b>3 - 4</b></td>
<td style="padding: 8px; border: 1px solid #ddd;"><b>Easy:</b> Common medical terms (e.g., "fever", "heart") used in simple sentences.</td>
</tr>
<tr>
<td style="padding: 8px; border: 1px solid #ddd;"><b>5 - 6</b></td>
<td style="padding: 8px; border: 1px solid #ddd;"><b>Moderate:</b> Some technical terms. Requires focused reading but understandable.</td>
</tr>
<tr>
<td style="padding: 8px; border: 1px solid #ddd;"><b>7 - 8</b></td>
<td style="padding: 8px; border: 1px solid #ddd;"><b>Hard:</b> Heavy use of medical jargon. Read like a clinical report.</td>
</tr>
<tr>
<td style="padding: 8px; border: 1px solid #ddd;"><b>9 - 10</b></td>
<td style="padding: 8px; border: 1px solid #ddd;"><b>Very Hard:</b> Specialist-level text. Extremely dense and difficult to follow.</td>
</tr>
</table>
</div>
"""
def load_questions():
with open(QUESTIONS_FILE, "r") as f:
all_q = json.load(f)
return random.sample(all_q, min(NUM_LITERACY_QUERIES, len(all_q)))
class AnnotationSession:
def __init__(self, dataset, questions):
base_samples = random.sample(dataset, NUM_QUESTIONS)
self.queue = list(base_samples)
for i in range(NUM_DUPLICATES):
self.queue.insert(DUPLICATE_INTERVAL + i, base_samples[i])
self.current_index = 0
self.results = []
self.questions = questions
self.session_folder = None
with open(DATA_PATH, "r") as f:
full_dataset = json.load(f)
session = AnnotationSession(full_dataset, load_questions())
def start_and_save_literacy(*answers):
timestamp = datetime.now().strftime("%Y-%m-%d_%H-%M-%S")
session_folder = os.path.join(SAVE_ROOT, timestamp)
os.makedirs(session_folder, exist_ok=True)
session.session_folder = session_folder
literacy_data = []
for i, ans in enumerate(answers):
q_info = session.questions[i]
literacy_data.append({
"question_id": q_info['id'],
"question_text": q_info['question'],
"user_answer": ans,
"is_correct": ans == q_info['correct']
})
with open(os.path.join(session_folder, "literacy_results.json"), "w") as f:
json.dump(literacy_data, f, indent=4)
first_pair = session.queue[0]
return (
gr.update(visible=False),
gr.update(visible=True),
first_pair['original_doc'],
first_pair['wiki_anchor'],
f"Item 1 of {len(session.queue)}"
)
def submit_rating(doc_slider, wiki_slider):
# 1. Capture the current result
current_pair = session.queue[session.current_index]
session.results.append({
"original_index": current_pair.get('index', 'unknown'),
"queue_position": session.current_index,
"doc_rating": doc_slider,
"wiki_rating": wiki_slider,
"timestamp": datetime.now().strftime("%Y-%m-%d %H:%M:%S")
})
# 2. Incremental Save: Write to file immediately on every click
annotation_file = os.path.join(session.session_folder, "annotation_results.json")
with open(annotation_file, "w") as f:
json.dump(session.results, f, indent=4)
# 3. Show Pop-up Notification (Gradio Info Toast)
gr.Info(f"Progress Saved: Item {session.current_index + 1} recorded.")
# Increment index
session.current_index += 1
# 4. Check if session is finished
if session.current_index < len(session.queue):
next_pair = session.queue[session.current_index]
return (
next_pair['original_doc'],
next_pair['wiki_anchor'],
f"Item {session.current_index + 1} of {len(session.queue)}",
5, 5 # Reset sliders to neutral middle value
)
else:
# Final update for the UI when done
return (
"✅ ALL TASKS COMPLETED",
"The data has been saved to your session folder. You may close this tab.",
"Status: Finished",
0, 0
)
# --- UI ---
with gr.Blocks(theme=gr.themes.Soft()) as demo:
gr.Markdown("# Medical Text Readability Annotation")
# Instructions available at all times via Accordion
with gr.Accordion("See Annotation Instructions & Scale Guide", open=True):
gr.HTML(GUIDE_HTML)
with gr.Column(visible=True) as intro_box:
gr.Markdown(f"### Pre-Task: Health Literacy Check ({NUM_LITERACY_QUERIES} Questions)")
literacy_inputs = []
for q in session.questions:
radio = gr.Radio(choices=q['options'], label=q['question'])
literacy_inputs.append(radio)
btn_start = gr.Button("Start Annotation", variant="primary")
with gr.Column(visible=False) as task_box:
progress = gr.Label(label="Progress")
with gr.Row():
with gr.Column():
doc_display = gr.Textbox(interactive=False, lines=12, label="Document D (Medical Text)")
doc_slider = gr.Slider(1, 10, step=1, label="Difficulty (1: Simple → 10: Technical)", value=0)
with gr.Column():
wiki_display = gr.Textbox(interactive=False, lines=12, label="Document W (Wikipedia Text)")
wiki_slider = gr.Slider(1, 10, step=1, label="Difficulty (1: Simple → 10: Technical)", value=0)
btn_submit = gr.Button("Submit & Next", variant="primary")
btn_start.click(
start_and_save_literacy,
inputs=literacy_inputs,
outputs=[intro_box, task_box, doc_display, wiki_display, progress]
)
btn_submit.click(
submit_rating,
inputs=[doc_slider, wiki_slider],
outputs=[doc_display, wiki_display, progress, doc_slider, wiki_slider]
)
demo.launch(share=True)