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This guide takes you from a clean machine to a running MicProtocol stack with all self-hosted integrations. Read end-to-end on first install; use the checklists for re-installs.
## 1. Prerequisites
| Tool | Version | Purpose |
|---|---|---|
| Node.js | >= 20.0.0 | API, Web, Admin, Mobile tooling |
| pnpm | >= 9.15.0 (locked to `pnpm@10.30.3`) | Workspace package manager |
| Docker + Docker Compose | latest stable | Infra (Postgres, Redis, Meilisearch, integrations) |
| Python | >= 3.11 | CLIP scoring engine |
| uv | latest | Python package manager for `services/clip-scorer` |
| FFmpeg | latest | Audio/video frame extraction (also installed in API image) |
| PostgreSQL client | 15+ | Optional local DB without Docker |
| Redis CLI | 7+ | Optional local Redis without Docker |
| podman + podman-compose | latest | Required only for `pnpm agents:run` |
Install uv:
```bash
curl -LsSf https://astral.sh/uv/install.sh | sh
```
## 2. Repository
```bash
git clone <repo-url> micprotocol
cd micprotocol
```
The repo is a Turborepo monorepo. Top-level layout:
```
micprotocol/
βββ apps/
β βββ api/ NestJS backend (tRPC + REST + Socket.io)
β βββ web/ Next.js 14 host dashboard + guest portal
β βββ admin/ Next.js platform-admin app
β βββ mobile/ Expo React Native app
βββ packages/
β βββ shared-types/ Zod schemas + domain enums
β βββ ui/ Cross-platform UI primitives
β βββ tsconfig/ Shared TS configs
β βββ eslint-config/ Shared ESLint config
βββ services/
β βββ clip-scorer/ Python ML engine (OpenCLIP + pyloudnorm + bart-large-mnli)
β βββ mic-realtime/ Erlang/OTP chat fanout + presence
βββ scripts/
β βββ init-databases.sql Per-integration Postgres databases
β βββ generate-secrets.sh Generates all self-hosted secrets
β βββ documenso-cert/README.md How to generate the Documenso signing cert
β βββ synthetic-agents/ Synthetic agent test framework
βββ docs/ This documentation set
βββ docker-compose.yml Production Docker Compose (full stack)
βββ docker-compose.coolify.yml Coolify override
βββ turbo.json Turborepo pipeline
βββ pnpm-workspace.yaml
```
## 3. Environment Configuration
```bash
cp .env.example .env
cp .env.example.coolify .env.coolify # only if deploying via Coolify
```
Generate strong secrets for the self-hosted integrations:
```bash
bash scripts/generate-secrets.sh > .env.production.formbricks
# Manually merge generated values into your .env
```
`scripts/generate-secrets.sh` produces:
- Core infrastructure (Postgres, Redis, Meilisearch, MinIO passwords)
- Encryption keys (never rotate after initial setup)
- Chatwoot, Cal.com, Formbricks, Documenso, Listmonk secrets
- LiveKit API key/secret/webhook secret
- Umami app secret
For each `*_ENCRYPTION_KEY` and `*_NEXTAUTH_SECRET`, treat them as immutable after first start β rotating will invalidate sessions and unrecoverable encrypted data.
### Generate the Documenso signing certificate (one-time)
```bash
openssl req -x509 -newkey rsa:4096 -keyout key.pem -out cert.pem \
-days 365 -nodes -subj "/CN=MicProtocol Documenso"
openssl pkcs12 -export -out scripts/documenso-cert/cert.p12 \
-inkey key.pem -in cert.pem \
-passout pass:"$(openssl rand -hex 32)"
rm key.pem cert.pem
```
Set `DOCUMENSO_SIGNING_PASSPHRASE` in `.env` to the passphrase used above. Production should use a CA-issued cert, never the self-signed one.
## 4. First Boot β Full Stack (Docker)
```bash
# 4.1. Start core infra (Postgres, Redis, Meilisearch)
docker compose up -d postgres redis meilisearch
# 4.2. Generate Prisma client and push schema
pnpm db:generate
pnpm db:push
# 4.3. Start the entire stack (API + worker + CLIP scorer + web + admin
# + all self-hosted integrations + realtime)
docker compose up -d
# 4.4. Verify
docker compose ps
curl -s http://localhost:4000/health
```
Default ports:
| Service | Port | URL |
|---|---|---|
| Web (host dashboard + guest portal) | 3000 | http://localhost:3000 |
| Admin | 3006 | http://localhost:3006 |
| API | 4000 | http://localhost:4000 |
| Swagger (API) | 4000 | http://localhost:4000/api/docs |
| Meilisearch | 7700 | http://localhost:7700 |
| mic-realtime (WS) | 4001 | ws://localhost:4001 |
| Cal.com | 3002 | http://localhost:3002 |
| Formbricks | 3001 | http://localhost:3001 |
| Umami | 3003 | http://localhost:3003 |
| Documenso | 3004 | http://localhost:3004 |
| Chatwoot | 3005 | http://localhost:3005 |
| Listmonk | 9000 | http://localhost:9000 |
| MinIO API | 9000 (internal) | http://localhost:9001 |
| MinIO Console | 9090 | http://localhost:9090 |
| LiveKit | 7880 (HTTP), 7881 (TCP), 7882 (UDP) | http://localhost:7880 |
| Mailhog UI | 8025 | http://localhost:8025 |
| Mailhog SMTP | 1025 | n/a |
## 5. First Boot β Local Dev (No Docker for App Code)
Useful when iterating on the API or web app and you have the infra running in Docker.
```bash
# 5.1. Install all JS deps
pnpm install
# 5.2. Install Python deps for CLIP scorer
cd services/clip-scorer
uv sync
cd ../..
# 5.3. Start only infra in Docker
docker compose up -d postgres redis meilisearch
# 5.4. Generate Prisma client and push schema
pnpm db:generate
pnpm db:push
# 5.5. Start all apps in dev mode
pnpm dev
```
The Turborepo pipeline runs `api`, `web`, `admin` (if configured), and any app with a `dev` script. Hot reload is enabled for both the API (NestJS) and Web (Next.js).
## 6. Verifying the Stack
### API
```bash
# Liveness
curl -s http://localhost:4000/health
# Detailed
curl -s http://localhost:4000/health/detailed
# Readiness (K8s style)
curl -s http://localhost:4000/health/ready
```
### Database
```bash
pnpm db:studio # opens Prisma Studio on http://localhost:5555
```
### Self-hosted integrations
After first boot, complete these one-time setup steps inside each UI:
| Service | Action |
|---|---|
| Cal.com | Create org `micprotocol`, generate an API key in Settings β API Keys; set `CALCOM_API_KEY` in `.env` and restart API |
| Formbricks | Create Environment, copy ID to `NEXT_PUBLIC_FORMBRICKS_ENVIRONMENT_ID`; generate API key in Settings β API Keys |
| Listmonk | Log in with `LISTMONK_ADMIN_USER`/`LISTMONK_ADMIN_PASSWORD`, generate API token in Settings β API Tokens |
| Documenso | Upload signing cert (already generated in step 3) and configure SMTP |
| Chatwoot | Create user, create inbox (Website), copy inbox ID and website token to `.env` |
| Umami | Add website, copy website ID to `NEXT_PUBLIC_UMAMI_WEBSITE_ID` |
| MinIO | Log in with `MINIO_ROOT_USER`/`MINIO_ROOT_PASSWORD`; buckets are auto-created by `minio-createbuckets` |
### Webhook smoke tests
Each self-hosted integration has a webhook the API consumes. Use the Integration Health controller to confirm reachability:
```bash
curl -s http://localhost:4000/integrations/health | jq
```
See [Webhooks](./webhooks.md) for the full endpoint catalog and signature headers.
## 7. Running Tests
### API unit tests (Jest)
```bash
pnpm --filter @micprotocol/api test
```
### API E2E tests
```bash
pnpm --filter @micprotocol/api test:e2e
```
### Synthetic agents (full-stack scenario sweep)
```bash
pnpm agents:run # full pipeline (pod up + seed + API + scenarios)
pnpm agents:orchestrator # orchestrator only (API must be running)
pnpm db:seed:agents # seed only
```
Requires `podman` + `podman-compose`. Outputs:
- `scripts/synthetic-agents/test-report.txt`
- `scripts/synthetic-agents/weaknesses.json`
## 8. Common Day-to-Day Commands
| Task | Command |
|---|---|
| Start everything | `pnpm dev` (JS apps) or `docker compose up -d` (full stack) |
| Rebuild after schema change | `pnpm db:generate && pnpm db:push` |
| Create a real migration | `pnpm --filter @micprotocol/api prisma:migrate` |
| Open Prisma Studio | `pnpm db:studio` |
| Run lint across the monorepo | `pnpm lint` |
| Run type check | `pnpm type-check` |
| Build for production | `pnpm build` |
| Tail logs | `docker compose logs -f api worker clip-scorer web` |
| Restart a single service | `docker compose restart <name>` |
| Stop everything | `docker compose down` |
| Wipe volumes (destructive) | `docker compose down -v` |
## 9. Troubleshooting First Run
### Postgres won't start
`docker compose logs postgres` β most often it's a port conflict (`5432` already in use). Either stop the local Postgres or change the host port mapping in `docker-compose.yml`.
### `pnpm db:push` complains about missing tables for `chatwoot`, `calcom`, etc.
You must run the init script that creates per-integration databases. The `init-databases.sql` is mounted into the Postgres container on first boot only β if the volume already exists, run manually:
```bash
docker exec -i micprotocol-postgres psql -U micprotocol -d micprotocol < scripts/init-databases.sql
```
### API returns 500 on first hit
Check that `CLERK_SECRET_KEY` and `CLERK_PUBLISHABLE_KEY` are set; without them the auth guard rejects all requests. For local-only development without Clerk, see [Security & Compliance](./security.md) for the dev-mode `x-user-id` header bypass.
### CLIP scorer stuck in "Scoringβ¦"
See [CLIP Scoring Engine β Troubleshooting](./clip-scoring.md#troubleshooting).
### Webhook 401s
Every webhook signature is verified with `crypto.timingSafeEqual()`. See [Security & Compliance](./security.md) and [Webhooks](./webhooks.md) for the exact header names per provider.
### Port already in use
The compose file uses fixed ports for every integration. Stop the conflicting process or remap the host port in `docker-compose.yml`.
## 10. Next Steps
- Read [Architecture](./architecture.md) for the bounded-context breakdown.
- Read [Self-Hosted Stack](./self-hosted-stack.md) before changing any container config.
- Read [Webhooks](./webhooks.md) before wiring a new integration.
- Read [Operations Runbook](./operations-runbook.md) before going to production.
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