danieltslz commited on
Commit
efbed1b
·
verified ·
1 Parent(s): b97db46

Remove PROBE prefix from display names

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Remove the visible probe_ prefix from the names of the 20 PROBE catalog entries. Stable IDs, paths, links, and Dataset content remain unchanged.

Files changed (1) hide show
  1. catalog.json +20 -20
catalog.json CHANGED
@@ -916,7 +916,7 @@
916
  "modality": "protein sequence / protein representation from PROBE human UniProt archive",
917
  "n_dims": 20,
918
  "n_genes": 18873,
919
- "name": "probe_aac",
920
  "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_aac",
921
  "qc_status": "legacy_core_package",
922
  "source_dataset": "embeddingsSSRF/gene_embeddings",
@@ -937,7 +937,7 @@
937
  "modality": "protein sequence / protein representation from PROBE human UniProt archive",
938
  "n_dims": 4096,
939
  "n_genes": 18453,
940
- "name": "probe_albert",
941
  "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_albert",
942
  "qc_status": "legacy_core_package",
943
  "source_dataset": "embeddingsSSRF/gene_embeddings",
@@ -958,7 +958,7 @@
958
  "modality": "protein sequence / protein representation from PROBE human UniProt archive",
959
  "n_dims": 80,
960
  "n_genes": 18871,
961
- "name": "probe_apaac",
962
  "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_apaac",
963
  "qc_status": "legacy_core_package",
964
  "source_dataset": "embeddingsSSRF/gene_embeddings",
@@ -979,7 +979,7 @@
979
  "modality": "protein sequence / protein representation from PROBE human UniProt archive",
980
  "n_dims": 1024,
981
  "n_genes": 18453,
982
- "name": "probe_bert_bfd",
983
  "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_bert_bfd",
984
  "qc_status": "legacy_core_package",
985
  "source_dataset": "embeddingsSSRF/gene_embeddings",
@@ -1000,7 +1000,7 @@
1000
  "modality": "protein sequence / protein representation from PROBE human UniProt archive",
1001
  "n_dims": 768,
1002
  "n_genes": 18461,
1003
- "name": "probe_bert_pfam",
1004
  "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_bert_pfam",
1005
  "qc_status": "legacy_core_package",
1006
  "source_dataset": "embeddingsSSRF/gene_embeddings",
@@ -1021,7 +1021,7 @@
1021
  "modality": "protein sequence / protein representation from PROBE human UniProt archive",
1022
  "n_dims": 20421,
1023
  "n_genes": 18873,
1024
- "name": "probe_blast",
1025
  "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_blast",
1026
  "qc_status": "legacy_core_package",
1027
  "source_dataset": "embeddingsSSRF/gene_embeddings",
@@ -1042,7 +1042,7 @@
1042
  "modality": "protein sequence / protein representation from PROBE human UniProt archive",
1043
  "n_dims": 512,
1044
  "n_genes": 18453,
1045
- "name": "probe_cpc_prot",
1046
  "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_cpc_prot",
1047
  "qc_status": "legacy_core_package",
1048
  "source_dataset": "embeddingsSSRF/gene_embeddings",
@@ -1063,7 +1063,7 @@
1063
  "modality": "protein sequence / protein representation from PROBE human UniProt archive",
1064
  "n_dims": 1280,
1065
  "n_genes": 18453,
1066
- "name": "probe_esmb1",
1067
  "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_esmb1",
1068
  "qc_status": "legacy_core_package",
1069
  "source_dataset": "embeddingsSSRF/gene_embeddings",
@@ -1084,7 +1084,7 @@
1084
  "modality": "protein sequence / protein representation from PROBE human UniProt archive",
1085
  "n_dims": 200,
1086
  "n_genes": 17564,
1087
- "name": "probe_gene2vec_uniprot",
1088
  "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_gene2vec_uniprot",
1089
  "qc_status": "legacy_core_package",
1090
  "source_dataset": "embeddingsSSRF/gene_embeddings",
@@ -1105,7 +1105,7 @@
1105
  "modality": "protein sequence / protein representation from PROBE human UniProt archive",
1106
  "n_dims": 20421,
1107
  "n_genes": 18873,
1108
- "name": "probe_hmmer",
1109
  "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_hmmer",
1110
  "qc_status": "legacy_core_package",
1111
  "source_dataset": "embeddingsSSRF/gene_embeddings",
@@ -1126,7 +1126,7 @@
1126
  "modality": "protein sequence / protein representation from PROBE human UniProt archive",
1127
  "n_dims": 400,
1128
  "n_genes": 18801,
1129
- "name": "probe_ksep",
1130
  "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_ksep",
1131
  "qc_status": "legacy_core_package",
1132
  "source_dataset": "embeddingsSSRF/gene_embeddings",
@@ -1147,7 +1147,7 @@
1147
  "modality": "protein sequence / protein representation from PROBE human UniProt archive",
1148
  "n_dims": 64,
1149
  "n_genes": 18873,
1150
- "name": "probe_learned_vec",
1151
  "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_learned_vec",
1152
  "qc_status": "legacy_core_package",
1153
  "source_dataset": "embeddingsSSRF/gene_embeddings",
@@ -1168,7 +1168,7 @@
1168
  "modality": "protein sequence / protein representation from PROBE human UniProt archive",
1169
  "n_dims": 300,
1170
  "n_genes": 17445,
1171
- "name": "probe_mut2vec",
1172
  "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_mut2vec",
1173
  "qc_status": "legacy_core_package",
1174
  "source_dataset": "embeddingsSSRF/gene_embeddings",
@@ -1189,7 +1189,7 @@
1189
  "modality": "protein sequence / protein representation from PROBE human UniProt archive",
1190
  "n_dims": 6227,
1191
  "n_genes": 18873,
1192
- "name": "probe_pfam",
1193
  "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_pfam",
1194
  "qc_status": "legacy_core_package",
1195
  "source_dataset": "embeddingsSSRF/gene_embeddings",
@@ -1210,7 +1210,7 @@
1210
  "modality": "protein sequence / protein representation from PROBE human UniProt archive",
1211
  "n_dims": 100,
1212
  "n_genes": 18873,
1213
- "name": "probe_protvec",
1214
  "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_protvec",
1215
  "qc_status": "legacy_core_package",
1216
  "source_dataset": "embeddingsSSRF/gene_embeddings",
@@ -1231,7 +1231,7 @@
1231
  "modality": "protein sequence / protein representation from PROBE human UniProt archive",
1232
  "n_dims": 1024,
1233
  "n_genes": 18873,
1234
- "name": "probe_seqvec",
1235
  "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_seqvec",
1236
  "qc_status": "legacy_core_package",
1237
  "source_dataset": "embeddingsSSRF/gene_embeddings",
@@ -1252,7 +1252,7 @@
1252
  "modality": "protein sequence / protein representation from PROBE human UniProt archive",
1253
  "n_dims": 1024,
1254
  "n_genes": 18453,
1255
- "name": "probe_t5",
1256
  "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_t5",
1257
  "qc_status": "legacy_core_package",
1258
  "source_dataset": "embeddingsSSRF/gene_embeddings",
@@ -1273,7 +1273,7 @@
1273
  "modality": "protein sequence / protein representation from PROBE human UniProt archive",
1274
  "n_dims": 50,
1275
  "n_genes": 18221,
1276
- "name": "probe_tcga_embedding",
1277
  "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_tcga_embedding",
1278
  "qc_status": "legacy_core_package",
1279
  "source_dataset": "embeddingsSSRF/gene_embeddings",
@@ -1294,7 +1294,7 @@
1294
  "modality": "protein sequence / protein representation from PROBE human UniProt archive",
1295
  "n_dims": 5700,
1296
  "n_genes": 18873,
1297
- "name": "probe_unirep",
1298
  "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_unirep",
1299
  "qc_status": "legacy_core_package",
1300
  "source_dataset": "embeddingsSSRF/gene_embeddings",
@@ -1315,7 +1315,7 @@
1315
  "modality": "protein sequence / protein representation from PROBE human UniProt archive",
1316
  "n_dims": 1024,
1317
  "n_genes": 18453,
1318
- "name": "probe_xlnet",
1319
  "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_xlnet",
1320
  "qc_status": "legacy_core_package",
1321
  "source_dataset": "embeddingsSSRF/gene_embeddings",
 
916
  "modality": "protein sequence / protein representation from PROBE human UniProt archive",
917
  "n_dims": 20,
918
  "n_genes": 18873,
919
+ "name": "aac",
920
  "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_aac",
921
  "qc_status": "legacy_core_package",
922
  "source_dataset": "embeddingsSSRF/gene_embeddings",
 
937
  "modality": "protein sequence / protein representation from PROBE human UniProt archive",
938
  "n_dims": 4096,
939
  "n_genes": 18453,
940
+ "name": "albert",
941
  "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_albert",
942
  "qc_status": "legacy_core_package",
943
  "source_dataset": "embeddingsSSRF/gene_embeddings",
 
958
  "modality": "protein sequence / protein representation from PROBE human UniProt archive",
959
  "n_dims": 80,
960
  "n_genes": 18871,
961
+ "name": "apaac",
962
  "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_apaac",
963
  "qc_status": "legacy_core_package",
964
  "source_dataset": "embeddingsSSRF/gene_embeddings",
 
979
  "modality": "protein sequence / protein representation from PROBE human UniProt archive",
980
  "n_dims": 1024,
981
  "n_genes": 18453,
982
+ "name": "bert_bfd",
983
  "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_bert_bfd",
984
  "qc_status": "legacy_core_package",
985
  "source_dataset": "embeddingsSSRF/gene_embeddings",
 
1000
  "modality": "protein sequence / protein representation from PROBE human UniProt archive",
1001
  "n_dims": 768,
1002
  "n_genes": 18461,
1003
+ "name": "bert_pfam",
1004
  "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_bert_pfam",
1005
  "qc_status": "legacy_core_package",
1006
  "source_dataset": "embeddingsSSRF/gene_embeddings",
 
1021
  "modality": "protein sequence / protein representation from PROBE human UniProt archive",
1022
  "n_dims": 20421,
1023
  "n_genes": 18873,
1024
+ "name": "blast",
1025
  "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_blast",
1026
  "qc_status": "legacy_core_package",
1027
  "source_dataset": "embeddingsSSRF/gene_embeddings",
 
1042
  "modality": "protein sequence / protein representation from PROBE human UniProt archive",
1043
  "n_dims": 512,
1044
  "n_genes": 18453,
1045
+ "name": "cpc_prot",
1046
  "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_cpc_prot",
1047
  "qc_status": "legacy_core_package",
1048
  "source_dataset": "embeddingsSSRF/gene_embeddings",
 
1063
  "modality": "protein sequence / protein representation from PROBE human UniProt archive",
1064
  "n_dims": 1280,
1065
  "n_genes": 18453,
1066
+ "name": "esmb1",
1067
  "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_esmb1",
1068
  "qc_status": "legacy_core_package",
1069
  "source_dataset": "embeddingsSSRF/gene_embeddings",
 
1084
  "modality": "protein sequence / protein representation from PROBE human UniProt archive",
1085
  "n_dims": 200,
1086
  "n_genes": 17564,
1087
+ "name": "gene2vec_uniprot",
1088
  "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_gene2vec_uniprot",
1089
  "qc_status": "legacy_core_package",
1090
  "source_dataset": "embeddingsSSRF/gene_embeddings",
 
1105
  "modality": "protein sequence / protein representation from PROBE human UniProt archive",
1106
  "n_dims": 20421,
1107
  "n_genes": 18873,
1108
+ "name": "hmmer",
1109
  "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_hmmer",
1110
  "qc_status": "legacy_core_package",
1111
  "source_dataset": "embeddingsSSRF/gene_embeddings",
 
1126
  "modality": "protein sequence / protein representation from PROBE human UniProt archive",
1127
  "n_dims": 400,
1128
  "n_genes": 18801,
1129
+ "name": "ksep",
1130
  "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_ksep",
1131
  "qc_status": "legacy_core_package",
1132
  "source_dataset": "embeddingsSSRF/gene_embeddings",
 
1147
  "modality": "protein sequence / protein representation from PROBE human UniProt archive",
1148
  "n_dims": 64,
1149
  "n_genes": 18873,
1150
+ "name": "learned_vec",
1151
  "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_learned_vec",
1152
  "qc_status": "legacy_core_package",
1153
  "source_dataset": "embeddingsSSRF/gene_embeddings",
 
1168
  "modality": "protein sequence / protein representation from PROBE human UniProt archive",
1169
  "n_dims": 300,
1170
  "n_genes": 17445,
1171
+ "name": "mut2vec",
1172
  "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_mut2vec",
1173
  "qc_status": "legacy_core_package",
1174
  "source_dataset": "embeddingsSSRF/gene_embeddings",
 
1189
  "modality": "protein sequence / protein representation from PROBE human UniProt archive",
1190
  "n_dims": 6227,
1191
  "n_genes": 18873,
1192
+ "name": "pfam",
1193
  "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_pfam",
1194
  "qc_status": "legacy_core_package",
1195
  "source_dataset": "embeddingsSSRF/gene_embeddings",
 
1210
  "modality": "protein sequence / protein representation from PROBE human UniProt archive",
1211
  "n_dims": 100,
1212
  "n_genes": 18873,
1213
+ "name": "protvec",
1214
  "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_protvec",
1215
  "qc_status": "legacy_core_package",
1216
  "source_dataset": "embeddingsSSRF/gene_embeddings",
 
1231
  "modality": "protein sequence / protein representation from PROBE human UniProt archive",
1232
  "n_dims": 1024,
1233
  "n_genes": 18873,
1234
+ "name": "seqvec",
1235
  "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_seqvec",
1236
  "qc_status": "legacy_core_package",
1237
  "source_dataset": "embeddingsSSRF/gene_embeddings",
 
1252
  "modality": "protein sequence / protein representation from PROBE human UniProt archive",
1253
  "n_dims": 1024,
1254
  "n_genes": 18453,
1255
+ "name": "t5",
1256
  "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_t5",
1257
  "qc_status": "legacy_core_package",
1258
  "source_dataset": "embeddingsSSRF/gene_embeddings",
 
1273
  "modality": "protein sequence / protein representation from PROBE human UniProt archive",
1274
  "n_dims": 50,
1275
  "n_genes": 18221,
1276
+ "name": "tcga_embedding",
1277
  "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_tcga_embedding",
1278
  "qc_status": "legacy_core_package",
1279
  "source_dataset": "embeddingsSSRF/gene_embeddings",
 
1294
  "modality": "protein sequence / protein representation from PROBE human UniProt archive",
1295
  "n_dims": 5700,
1296
  "n_genes": 18873,
1297
+ "name": "unirep",
1298
  "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_unirep",
1299
  "qc_status": "legacy_core_package",
1300
  "source_dataset": "embeddingsSSRF/gene_embeddings",
 
1315
  "modality": "protein sequence / protein representation from PROBE human UniProt archive",
1316
  "n_dims": 1024,
1317
  "n_genes": 18453,
1318
+ "name": "xlnet",
1319
  "package_url": "https://huggingface.co/datasets/embeddingsSSRF/gene_embeddings/tree/326b257a20e73df337ece40bb82401e277851f5b/data/embeddings/probe_xlnet",
1320
  "qc_status": "legacy_core_package",
1321
  "source_dataset": "embeddingsSSRF/gene_embeddings",