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00639e5 516fa71 00639e5 3ba1438 516fa71 00639e5 d61afa5 00639e5 cbdbf3e d61afa5 516fa71 cbdbf3e 00639e5 cbdbf3e 516fa71 40dd0b6 516fa71 b20574a cbdbf3e 00639e5 d61afa5 79d228b 00639e5 4337838 00639e5 516fa71 00639e5 516fa71 cbdbf3e d61afa5 690b7f7 d61afa5 cbdbf3e 516fa71 cbdbf3e 516fa71 167c3ae b20574a 40dd0b6 167c3ae 40dd0b6 167c3ae | 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 | import os
import io
import uuid
import base64
import tempfile
from fastapi import FastAPI, UploadFile, File, HTTPException
from fastapi.middleware.cors import CORSMiddleware
from fastapi.responses import StreamingResponse
from PIL import Image
from src.rag_pipeline import KidneyStoneRAGPipeline
from src.llm_client import GeminiClient
from src.convert_to_pdf import md_text_to_pdf_bytes
from src.correction_service import CorrectionService
from src.correction_store import CorrectionStore
from src.models import CorrectionRequest, CorrectionResponse, VerifyRequest
from pydantic import BaseModel
app = FastAPI()
app.add_middleware(
CORSMiddleware,
allow_origins=["*"],
allow_methods=["*"],
allow_headers=["*"],
)
# Startup'ta bir kez yükle
pipeline = KidneyStoneRAGPipeline(
detector_model_path="yolo26-seg_best.pt",
kb_persist_directory="./chroma_db"
)
llm = GeminiClient()
correction_store = CorrectionStore()
correction_svc = CorrectionService(kb=pipeline.kb, store=correction_store)
correction_svc.replay_corrections_on_startup()
class RegenerateRequest(BaseModel):
session_id: str
features: dict
class TranslateRequest(BaseModel):
report: str
class PDFRequest(BaseModel):
report: str
annotated_image: str | None = None
@app.get("/")
@app.get("/health")
def health():
return {"status": "ok"}
@app.post("/predict")
async def predict(file: UploadFile = File(...)):
# Geçici dosyaya kaydet (pipeline path istiyor)
img_bytes = await file.read()
# Gelen format ne olursa olsun (JPEG, DICOM-export PNG vb.) orijinal baytları koru
suffix = os.path.splitext(file.filename or "")[1] or ".png"
with tempfile.NamedTemporaryFile(suffix=suffix, delete=False) as tmp:
tmp.write(img_bytes)
tmp_path = tmp.name
# Pipeline'ı çalıştır
result = pipeline.process(tmp_path, output_dir="/tmp")
# Annotated görüntüyü base64'e çevir
with open(result["annotated_image_path"], "rb") as f:
annotated_b64 = base64.b64encode(f.read()).decode()
return {
"session_id": str(uuid.uuid4()),
"has_stone": result["features"].get("stone_detected", False),
"detections": result["detection"],
"features": result["features"],
"annotated_image": annotated_b64,
"report": result["report"],
"retrieved_context": result["retrieved_context"],
}
@app.post("/download-pdf")
async def download_pdf(body: PDFRequest):
from fastapi import HTTPException
try:
pdf_bytes = md_text_to_pdf_bytes(body.report, body.annotated_image)
except Exception as e:
raise HTTPException(status_code=500, detail=f"PDF oluşturulamadı: {str(e)}")
return StreamingResponse(
io.BytesIO(pdf_bytes),
media_type="application/pdf",
headers={"Content-Disposition": "attachment; filename=kidney_stone_report.pdf"},
)
@app.post("/translate")
async def translate(body: TranslateRequest):
system_prompt = "You are a medical translator. Translate the following radiology report to Turkish. Keep medical terminology accurate and professional. Preserve the exact structure, headings, and formatting of the original report."
translated = llm.generate(system_prompt=system_prompt, user_prompt=body.report)
return {"report_tr": translated}
@app.post("/correct", response_model=CorrectionResponse)
async def correct_report(body: CorrectionRequest):
"""
Doktor bir rapordaki hatayı bildirir.
Sistem kök nedeni analiz eder ve ChromaDB'yi günceller.
"""
try:
return correction_svc.process_correction(body)
except Exception as e:
raise HTTPException(status_code=500, detail=str(e))
@app.post("/verify-correction")
async def verify_correction(body: VerifyRequest):
"""
Düzeltmenin etkili olup olmadığını kontrol eder.
Aynı özelliklerle retrieval yeniden çalıştırılır.
"""
try:
return correction_svc.verify_correction(body.correction_id, body.features)
except ValueError as e:
raise HTTPException(status_code=404, detail=str(e))
except Exception as e:
raise HTTPException(status_code=500, detail=str(e))
@app.get("/corrections")
async def list_corrections(limit: int = 50):
"""Tüm düzeltmelerin audit trail listesi."""
return correction_store.list_corrections(limit)
@app.get("/corrections/{correction_id}")
async def get_correction(correction_id: str):
"""Belirli bir düzeltmenin detaylarını getir."""
record = correction_store.get_correction(correction_id)
if not record:
raise HTTPException(status_code=404, detail="Correction not found")
return record
@app.post("/regenerate-report")
async def regenerate_report(body: RegenerateRequest):
from src.query_builder import build_all_queries
from src.report_generator import build_report_prompt
features = body.features
queries = build_all_queries(features) if features.get("stone_detected") else []
largest_mm = features.get("largest_stone_mm")
size_filter = pipeline._stone_size_range(largest_mm) if largest_mm else None
retrieved = pipeline.retrieve_context(queries, size_filter=size_filter) if queries else []
system_prompt, user_prompt = build_report_prompt(features, retrieved)
report = llm.generate(system_prompt=system_prompt, user_prompt=user_prompt, temperature=0.3)
return {
"session_id": body.session_id,
"report": report,
"retrieved_context": retrieved,
}
@app.get("/admin/export-correction-store")
async def export_correction_store():
"""HF Spaces'taki güncel correction_store.db'yi indir."""
import os
from fastapi.responses import Response
db_path = correction_store.db_path
if not os.path.exists(db_path):
raise HTTPException(status_code=404, detail="correction_store.db bulunamadı")
with open(db_path, "rb") as f:
db_bytes = f.read()
return Response(
content=db_bytes,
media_type="application/octet-stream",
headers={"Content-Disposition": "attachment; filename=correction_store.db"},
)
#Test için daha sonra kaldırılıcak
@app.get("/admin/chunk-edits")
async def admin_chunk_edits():
"""correction_store içindeki tüm chunk değişikliklerini listeler."""
import sqlite3
conn = sqlite3.connect(correction_store.db_path)
conn.row_factory = sqlite3.Row
rows = conn.execute(
"SELECT edit_id, correction_id, chroma_id, edit_type, "
"original_content, new_content, timestamp "
"FROM chunk_edits ORDER BY timestamp DESC"
).fetchall()
conn.close()
return {"chunk_edits": [dict(r) for r in rows], "total": len(rows)} |