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Running on Zero
Running on Zero
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README.md
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@@ -6,6 +6,7 @@ colorTo: purple
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sdk: gradio
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sdk_version: "6.11.0"
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python_version: "3.10"
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app_file: app.py
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pinned: false
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license: mit
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sdk: gradio
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sdk_version: "6.11.0"
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python_version: "3.10"
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suggested_hardware: zero-a10g
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app_file: app.py
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pinned: false
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license: mit
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app.py
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"""
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GastroGen — Generative AI for Gastrointestinal Health (v2.0)
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Official Hugging Face Gradio Deployment Studio
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Lead Clinician / Researcher: Devashri
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Framework: PyTorch 2.x • Gradio
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"""
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import os
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import io
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import math
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import time
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import torch
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import torch.nn as nn
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import torch.nn.functional as F
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# Startup diagnostic
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print("GastroGen Hugging Face Space started")
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print("PyTorch version:", torch.__version__)
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print("CUDA available:", torch.cuda.is_available())
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# Device
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device = torch.device("cuda" if torch.cuda.is_available() else "cpu")
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print(f"[+] GastroGen
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# -------------------------------------------------------------
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# 1. Model Initialization
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path = config["path"]
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if os.path.exists(path):
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try:
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-
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if isinstance(checkpoint, dict) and "state_dict" in checkpoint:
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model.load_state_dict(checkpoint["state_dict"])
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elif isinstance(checkpoint, dict) and "model_state_dict" in checkpoint:
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return None, None
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if pil_img.mode != "RGB":
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pil_img = pil_img.convert("RGB")
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tensor = transform_pipe(pil_img).unsqueeze(0)
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orig_np = tensor.squeeze(0).permute(1, 2, 0).cpu().numpy()
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return tensor, orig_np
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def run_autoencoder_inference(input_img):
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if input_img is None:
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return None, "Please upload or select an endoscopy image.", "", ""
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if model is None:
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return None, "Autoencoder model weight checkpoint not loaded.", "", ""
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start_t = time.time()
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with torch.no_grad():
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recon_tensor = model(tensor)
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| **SSIM Score** | **`{ssim:.4f}`** | $> 0.950$ | 🟢 Optimal High-Fidelity |
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| **PSNR** | **`{psnr:.2f} dB`** | $> 30.0$ dB | 🟢 Low-Noise Signal |
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| **MSE Loss** | **`{mse:.6f}`** | $< 0.0020$ | 🟢 Minimal Variance |
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| **Inference Latency** | **`{latency:.1f} ms`** | Real-time | ⚡ Accelerated |
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"""
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# Anomaly status
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normal_model = loaded_models.get("normal_only_autoencoder")
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anomaly_md = ""
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if normal_model:
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with torch.no_grad():
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norm_recon = normal_model(tensor).squeeze(0).clamp(0, 1).permute(1, 2, 0).cpu().numpy()
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anomaly_score = float(np.mean((orig_np - norm_recon) ** 2))
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status_color = "🔴 Pathology / Abnormality Detected" if is_pathology else "🟢 Healthy Mucosal Landmark"
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anomaly_md = f"**Abnormality Screening**: {status_color} *(Score: `{anomaly_score:.6f}` | Cutoff: `{ANOMALY_THRESHOLD:.6f}`)*"
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return recon_pil, metrics_md, anomaly_md
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def run_vae_inference(input_img, noise_scale):
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if input_img is None:
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return None, "Please upload or select an endoscopy image."
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if model is None:
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return None, "VAE model weight checkpoint not loaded."
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start_t = time.time()
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with torch.no_grad():
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mu, logvar, skips = model.encode(tensor)
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| **SSIM Score** | **`{ssim:.4f}`** | Structural texture preservation across latent manifold |
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| **PSNR** | **`{psnr:.2f} dB`** | Peak Signal-to-Noise Ratio |
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| **Sobel Edge MSE** | **`{mse:.6f}`** | Edge variance regularized by Sobel gradient loss |
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| **Latent Sampling Latency** | **`{latency:.1f} ms`** | Reparameterization forward pass |
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"""
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return recon_pil, metrics_md
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def run_vit_inference(input_img, view_mode):
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if input_img is None:
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return None, {}, "Please upload or select an endoscopy image."
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if model is None:
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return None, {}, "Vision Transformer weight checkpoint not loaded."
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start_t = time.time()
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with torch.no_grad():
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recon_tensor, mu, logvar = model(tensor)
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out_pil = Image.blend(orig_pil_128, heatmap_pil, alpha=0.45)
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top_class = max(prob_dict, key=prob_dict.get)
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info_md = f"**Primary ViT Diagnosis**: `{top_class}` ({prob_dict[top_class]*100:.1f}%) | Latency: `{latency:.1f} ms`"
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return out_pil, prob_dict, info_md
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def run_model_comparison(input_img):
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if input_img is None:
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return None, None, None, None, "Please upload or select an endoscopy image."
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vae_model = loaded_models.get("vae")
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vit_model = loaded_models.get("transformer_vae")
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# 1. Autoencoder
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with torch.no_grad():
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ae_tensor = ae_model(
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ae_np = ae_tensor.permute(1, 2, 0).cpu().numpy()
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ae_pil = Image.fromarray((ae_np * 255).astype(np.uint8))
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ae_ssim = float(ssim_fn(orig_np, ae_np, channel_axis=2, data_range=1.0))
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ae_mse = float(np.mean((orig_np - ae_np) ** 2))
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# 2. VAE
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with torch.no_grad():
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mu, logvar, skips = vae_model.encode(
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vae_tensor = vae_model.decoder(mu, skips).squeeze(0).clamp(0, 1)
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vae_np = vae_tensor.permute(1, 2, 0).cpu().numpy()
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vae_pil = Image.fromarray((vae_np * 255).astype(np.uint8))
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vae_mse = float(np.mean((orig_np - vae_np) ** 2))
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# 3. ViT
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with torch.no_grad():
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vit_tensor, _, _ = vit_model(
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vit_np = vit_tensor.squeeze(0).clamp(0, 1).permute(1, 2, 0).cpu().numpy()
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vit_pil = Image.fromarray((vit_np * 255).astype(np.uint8))
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vit_ssim = float(ssim_fn(orig_np, vit_np, channel_axis=2, data_range=1.0))
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### 🏆 Clinical Multi-Model Benchmark Results
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| Architecture | Latent Space | SSIM (Fidelity) | PSNR | MSE Loss | Device |
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| :--- | :--- | :--- | :--- | :--- | :--- |
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| **Autoencoder v2** | 256-D Bottleneck | **`{ae_ssim:.4f}`** | **`{ae_psnr:.2f} dB`** | **`{ae_mse:.6f}`** | {
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| **Spatial VAE v2** | $8 \\times 32 \\times 32$ Map | **`{vae_ssim:.4f}`** | **`{vae_psnr:.2f} dB`** | **`{vae_mse:.6f}`** | {
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| **Vision Transformer (ViT)** | 196 Patch Tokens | **`{vit_ssim:.4f}`** | **`{vit_psnr:.2f} dB`** | **`{vit_mse:.6f}`** | {
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"""
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return orig_pil, ae_pil, vae_pil, vit_pil, table_md
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"""
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GastroGen — Generative AI for Gastrointestinal Health (v2.0)
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Official Hugging Face Gradio Deployment Studio (ZeroGPU Accelerated)
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Lead Clinician / Researcher: Devashri
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Framework: PyTorch 2.x • Gradio 6.x • ZeroGPU • Kvasir-v2 Medical Endoscopy Benchmark
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"""
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import os
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import io
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import math
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import time
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# ZeroGPU initialization: spaces MUST be imported BEFORE torch or any CUDA-related library
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try:
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import spaces
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except ImportError:
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class _SpacesMock:
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@staticmethod
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def GPU(fn=None, duration=None):
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if fn is None:
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def decorator(func):
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return func
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return decorator
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return fn
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spaces = _SpacesMock()
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import torch
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import torch.nn as nn
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import torch.nn.functional as F
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# Startup diagnostic
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print("GastroGen Hugging Face Space started")
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print("PyTorch version:", torch.__version__)
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# Device strategy: Support local CPU/CUDA development and HF ZeroGPU
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# Models remain on CPU initially; GPU is dynamically allocated inside @spaces.GPU functions
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device = torch.device("cuda" if torch.cuda.is_available() else "cpu")
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print(f"[+] GastroGen default host device: {device}")
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# -------------------------------------------------------------
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# 1. Model Initialization
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path = config["path"]
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if os.path.exists(path):
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try:
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# Load all models initially into CPU memory for ZeroGPU compatibility
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model = config["class_fn"]().to("cpu")
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checkpoint = torch.load(path, map_location="cpu")
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if isinstance(checkpoint, dict) and "state_dict" in checkpoint:
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model.load_state_dict(checkpoint["state_dict"])
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elif isinstance(checkpoint, dict) and "model_state_dict" in checkpoint:
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return None, None
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if pil_img.mode != "RGB":
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pil_img = pil_img.convert("RGB")
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tensor = transform_pipe(pil_img).unsqueeze(0)
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orig_np = tensor.squeeze(0).permute(1, 2, 0).cpu().numpy()
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return tensor, orig_np
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@spaces.GPU
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def run_autoencoder_inference(input_img):
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if input_img is None:
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return None, "Please upload or select an endoscopy image.", "", ""
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if model is None:
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return None, "Autoencoder model weight checkpoint not loaded.", "", ""
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infer_device = torch.device("cuda" if torch.cuda.is_available() else "cpu")
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model = model.to(infer_device)
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tensor = tensor.to(infer_device)
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start_t = time.time()
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with torch.no_grad():
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recon_tensor = model(tensor)
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| **SSIM Score** | **`{ssim:.4f}`** | $> 0.950$ | 🟢 Optimal High-Fidelity |
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| **PSNR** | **`{psnr:.2f} dB`** | $> 30.0$ dB | 🟢 Low-Noise Signal |
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| **MSE Loss** | **`{mse:.6f}`** | $< 0.0020$ | 🟢 Minimal Variance |
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| **Inference Latency** | **`{latency:.1f} ms`** | Real-time | ⚡ Accelerated ({infer_device.type.upper()}) |
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"""
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# Anomaly status
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normal_model = loaded_models.get("normal_only_autoencoder")
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anomaly_md = ""
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if normal_model:
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normal_model = normal_model.to(infer_device)
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with torch.no_grad():
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norm_recon = normal_model(tensor).squeeze(0).clamp(0, 1).permute(1, 2, 0).cpu().numpy()
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anomaly_score = float(np.mean((orig_np - norm_recon) ** 2))
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status_color = "🔴 Pathology / Abnormality Detected" if is_pathology else "🟢 Healthy Mucosal Landmark"
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anomaly_md = f"**Abnormality Screening**: {status_color} *(Score: `{anomaly_score:.6f}` | Cutoff: `{ANOMALY_THRESHOLD:.6f}`)*"
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if infer_device.type == "cuda":
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model.to("cpu")
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if normal_model:
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normal_model.to("cpu")
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torch.cuda.empty_cache()
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return recon_pil, metrics_md, anomaly_md
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@spaces.GPU
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def run_vae_inference(input_img, noise_scale):
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if input_img is None:
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return None, "Please upload or select an endoscopy image."
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if model is None:
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return None, "VAE model weight checkpoint not loaded."
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infer_device = torch.device("cuda" if torch.cuda.is_available() else "cpu")
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model = model.to(infer_device)
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tensor = tensor.to(infer_device)
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start_t = time.time()
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with torch.no_grad():
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mu, logvar, skips = model.encode(tensor)
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| **SSIM Score** | **`{ssim:.4f}`** | Structural texture preservation across latent manifold |
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| **PSNR** | **`{psnr:.2f} dB`** | Peak Signal-to-Noise Ratio |
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| **Sobel Edge MSE** | **`{mse:.6f}`** | Edge variance regularized by Sobel gradient loss |
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| **Latent Sampling Latency** | **`{latency:.1f} ms`** | Reparameterization forward pass ({infer_device.type.upper()}) |
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"""
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if infer_device.type == "cuda":
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model.to("cpu")
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torch.cuda.empty_cache()
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return recon_pil, metrics_md
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@spaces.GPU
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def run_vit_inference(input_img, view_mode):
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if input_img is None:
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return None, {}, "Please upload or select an endoscopy image."
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if model is None:
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return None, {}, "Vision Transformer weight checkpoint not loaded."
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infer_device = torch.device("cuda" if torch.cuda.is_available() else "cpu")
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model = model.to(infer_device)
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tensor = tensor.to(infer_device)
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start_t = time.time()
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with torch.no_grad():
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recon_tensor, mu, logvar = model(tensor)
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out_pil = Image.blend(orig_pil_128, heatmap_pil, alpha=0.45)
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top_class = max(prob_dict, key=prob_dict.get)
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info_md = f"**Primary ViT Diagnosis**: `{top_class}` ({prob_dict[top_class]*100:.1f}%) | Latency: `{latency:.1f} ms` ({infer_device.type.upper()})"
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if infer_device.type == "cuda":
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model.to("cpu")
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torch.cuda.empty_cache()
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return out_pil, prob_dict, info_md
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@spaces.GPU
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def run_model_comparison(input_img):
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if input_img is None:
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return None, None, None, None, "Please upload or select an endoscopy image."
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vae_model = loaded_models.get("vae")
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vit_model = loaded_models.get("transformer_vae")
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infer_device = torch.device("cuda" if torch.cuda.is_available() else "cpu")
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tensor_dev = tensor.to(infer_device)
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# 1. Autoencoder
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ae_model = ae_model.to(infer_device)
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with torch.no_grad():
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ae_tensor = ae_model(tensor_dev).squeeze(0).clamp(0, 1)
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ae_np = ae_tensor.permute(1, 2, 0).cpu().numpy()
|
| 339 |
ae_pil = Image.fromarray((ae_np * 255).astype(np.uint8))
|
| 340 |
ae_ssim = float(ssim_fn(orig_np, ae_np, channel_axis=2, data_range=1.0))
|
|
|
|
| 342 |
ae_mse = float(np.mean((orig_np - ae_np) ** 2))
|
| 343 |
|
| 344 |
# 2. VAE
|
| 345 |
+
vae_model = vae_model.to(infer_device)
|
| 346 |
with torch.no_grad():
|
| 347 |
+
mu, logvar, skips = vae_model.encode(tensor_dev)
|
| 348 |
vae_tensor = vae_model.decoder(mu, skips).squeeze(0).clamp(0, 1)
|
| 349 |
vae_np = vae_tensor.permute(1, 2, 0).cpu().numpy()
|
| 350 |
vae_pil = Image.fromarray((vae_np * 255).astype(np.uint8))
|
|
|
|
| 353 |
vae_mse = float(np.mean((orig_np - vae_np) ** 2))
|
| 354 |
|
| 355 |
# 3. ViT
|
| 356 |
+
vit_model = vit_model.to(infer_device)
|
| 357 |
with torch.no_grad():
|
| 358 |
+
vit_tensor, _, _ = vit_model(tensor_dev)
|
| 359 |
vit_np = vit_tensor.squeeze(0).clamp(0, 1).permute(1, 2, 0).cpu().numpy()
|
| 360 |
vit_pil = Image.fromarray((vit_np * 255).astype(np.uint8))
|
| 361 |
vit_ssim = float(ssim_fn(orig_np, vit_np, channel_axis=2, data_range=1.0))
|
|
|
|
| 366 |
### 🏆 Clinical Multi-Model Benchmark Results
|
| 367 |
| Architecture | Latent Space | SSIM (Fidelity) | PSNR | MSE Loss | Device |
|
| 368 |
| :--- | :--- | :--- | :--- | :--- | :--- |
|
| 369 |
+
| **Autoencoder v2** | 256-D Bottleneck | **`{ae_ssim:.4f}`** | **`{ae_psnr:.2f} dB`** | **`{ae_mse:.6f}`** | {infer_device.type.upper()} |
|
| 370 |
+
| **Spatial VAE v2** | $8 \\times 32 \\times 32$ Map | **`{vae_ssim:.4f}`** | **`{vae_psnr:.2f} dB`** | **`{vae_mse:.6f}`** | {infer_device.type.upper()} |
|
| 371 |
+
| **Vision Transformer (ViT)** | 196 Patch Tokens | **`{vit_ssim:.4f}`** | **`{vit_psnr:.2f} dB`** | **`{vit_mse:.6f}`** | {infer_device.type.upper()} |
|
| 372 |
"""
|
| 373 |
+
if infer_device.type == "cuda":
|
| 374 |
+
for m in [ae_model, vae_model, vit_model]:
|
| 375 |
+
if m:
|
| 376 |
+
m.to("cpu")
|
| 377 |
+
torch.cuda.empty_cache()
|
| 378 |
+
|
| 379 |
return orig_pil, ae_pil, vae_pil, vit_pil, table_md
|
| 380 |
|
| 381 |
|