Update app.py

app.py

@@ -895,61 +895,7 @@ def create_gradio_interface():
             ]
         )
         
-        # Examples
-        gr.Markdown("## 💡 Example Sequences")
-        
-        example_sequences = [
-            ["ATGGAGTTGCTAATCCTCAAAGCAACAGCAGAAAAAAGCTGCAAAGGAGTTGCTAATCCTCAAAGCAACAGCAGAAAAAAGC", 90, True],
-            ["ATGGATGACCCCATCAATGACCCCATCGATATGGATGACCCCATCAATGACCCCATCGATATGGATGACCCCATCAATGACCCCATCGAT", 85, False],
-            ["ATGAAAGACTGCATCAAAGACTGCATCGAAATGAAAGACTGCATCAAAGACTGCATCGAAATGAAAGACTGCATCAAAGACTGCATCGAA", 95, True]
-        ]
-        
-        gr.Examples(
-            examples=example_sequences,
-            inputs=[dna_input, similarity_score, build_ml_tree],
-            outputs=[
-                boundary_output,
-                keras_output,
-                ml_tree_output,
-                simplified_ml_output,
-                summary_output,
-                aligned_file_output,
-                phy_file_output,
-                html_file_output,
-                tree_viewer
-            ],
-            fn=run_pipeline,
-            cache_examples=False
-        )
-        
-        # Help Section
-        with gr.Accordion("❓ Help & Information", open=False):
-            gr.Markdown("""
-            ### How to Use This Pipeline:
-            
-            1. **Input your sequence**: Either paste directly or upload a FASTA file
-            2. **Set similarity threshold**: Higher values (95-99%) for closely related sequences
-            3. **Choose ML tree option**: Enable for comprehensive phylogenetic analysis
-            4. **Run analysis**: Click the analysis button and wait for results
-            
-            ### Requirements:
-            - For phylogenetic placement: MAFFT and IQ-TREE must be installed
-            - Minimum sequence length: 100 bp for phylogenetic analysis, 6 bp for validation
-            - Supported formats: Raw DNA sequence or FASTA format
-            
-            ### Outputs:
-            - **F Gene Extraction**: Boundary-aware extraction of F gene regions
-            - **F Gene Validation**: Confidence score for F gene authenticity
-            - **Phylogenetic Placement**: Position in reference phylogenetic tree
-            - **Simplified Tree**: Interactive visualization of phylogenetic relationships
-            - **Downloads**: Alignment files, tree files, and interactive HTML
-            
-            ### Troubleshooting:
-            - If phylogenetic placement fails, check MAFFT/IQ-TREE installation
-            - For short sequences, only validation will be performed
-            - Large sequences may take several minutes to process
-            """)
-    
+       
     return iface
 
 # --- Main Execution ---