Upload app.py with huggingface_hub
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app.py
CHANGED
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@@ -1,17 +1,11 @@
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import os
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import time
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import io
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import json
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import pickle
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import hashlib
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import random
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import warnings
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from
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from typing import Dict, List, Optional, Tuple, Any
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import cv2
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import numpy as np
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import pandas as pd
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import torch
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import torch.nn as nn
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import torch.nn.functional as F
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@@ -20,6 +14,7 @@ import timm
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import albumentations as A
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from albumentations.pytorch import ToTensorV2
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from pytorch_grad_cam import GradCAMPlusPlus
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import gradio as gr
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warnings.filterwarnings("ignore")
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@@ -33,14 +28,7 @@ NUM_CLASSES = 5
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BACKBONE = "tf_efficientnetv2_m"
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FV_BACKBONE = "convnext_tiny.fb_in22k"
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GRADE_MAP = {
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0: "No DR",
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1: "Mild DR",
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2: "Moderate DR",
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3: "Severe DR",
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4: "Proliferative DR",
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}
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GRADE_COLORS = ["#2ecc71", "#f1c40f", "#e67e22", "#e74c3c", "#8e44ad"]
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SEVERITY_ICONS = ["π’", "π‘", "π ", "π΄", "π£"]
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CLINICAL_ACTION = [
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IMAGENET_MEAN = [0.485, 0.456, 0.406]
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IMAGENET_STD = [0.229, 0.224, 0.225]
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# =============================================================================
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# Model Definitions
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# =============================================================================
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super().__init__()
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self.p = nn.Parameter(torch.tensor(p))
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self.eps = eps
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def forward(self, x: torch.Tensor) -> torch.Tensor:
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return F.adaptive_avg_pool2d(x.clamp(min=self.eps).pow(self.p), 1).pow(1.0 / self.p)
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class CoralHead(nn.Module):
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def __init__(self, in_features: int, num_classes: int):
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super().__init__()
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self.num_classes = num_classes
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self.linear = nn.Linear(in_features, 1, bias=False)
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self.bias = nn.Parameter(torch.zeros(num_classes - 1))
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def forward(self, x: torch.Tensor) -> torch.Tensor:
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class DRHead(nn.Module):
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def __init__(self, in_features: int, num_classes: int = 5, dropout: float = 0.3):
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super().__init__()
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self.net = nn.Sequential(
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nn.Linear(in_features, 512),
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nn.
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nn.SiLU(inplace=True),
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nn.Dropout(dropout),
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nn.Linear(512, 256),
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nn.BatchNorm1d(256),
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nn.SiLU(inplace=True),
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nn.Dropout(dropout / 2),
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nn.Linear(256, num_classes),
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)
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def forward(self, x: torch.Tensor) -> torch.Tensor:
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return self.net(x)
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class DRModel(nn.Module):
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def __init__(self, backbone: str = BACKBONE, num_classes: int = 5, pretrained: bool = False):
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super().__init__()
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self.pool = GeM(p=3.0)
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self.head_cls = DRHead(in_feat, num_classes)
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self.head_coral = CoralHead(in_feat, num_classes)
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def forward(self, x: torch.Tensor) -> Dict[str, torch.Tensor]:
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feat = self.backbone(x)
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feat = self.pool(feat).flatten(1)
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return {"logits": self.head_cls(feat), "coral": self.head_coral(feat)}
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class FundusValidator(nn.Module):
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def __init__(self,
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super().__init__()
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self.backbone = timm.create_model(backbone_name, pretrained=
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for p in self.backbone.parameters():
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with torch.no_grad():
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feat_dim = self.backbone(torch.zeros(1, 3, 224, 224)).shape[1]
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self.head = nn.Sequential(
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nn.GELU(),
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nn.Dropout(0.3),
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nn.Linear(256, 2),
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)
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def extract_features(self, x: torch.Tensor) -> torch.Tensor:
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with torch.no_grad(): return self.backbone(x)
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def forward(self, x: torch.Tensor) -> torch.Tensor:
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return self.head(feats)
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# =============================================================================
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# Preprocessing
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# =============================================================================
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_clahe = cv2.createCLAHE(clipLimit=2.0, tileGridSize=(8, 8))
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def apply_clahe_lab(rgb: np.ndarray) -> np.ndarray:
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lab = cv2.cvtColor(rgb, cv2.COLOR_RGB2LAB)
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lab[:, :, 0] = _clahe.apply(lab[:, :, 0])
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return cv2.cvtColor(lab, cv2.COLOR_LAB2RGB)
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def retinal_mask(rgb: np.ndarray) -> np.ndarray:
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gray = cv2.cvtColor(rgb, cv2.COLOR_RGB2GRAY)
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_, m = cv2.threshold(gray, 15, 255, cv2.THRESH_BINARY)
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return m
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def crop_retinal_disc(rgb: np.ndarray, pad: int = 10) -> np.ndarray:
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x, y, w, h = cv2.boundingRect(max(contours, key=cv2.contourArea))
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x, y = max(0, x - pad), max(0, y - pad)
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x2, y2 = min(rgb.shape[1], x + w + 2 * pad), min(rgb.shape[0], y + h + 2 * pad)
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return rgb[y:y2, x:x2]
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# =============================================================================
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#
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# =============================================================================
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# DR Model
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model = DRModel(BACKBONE, NUM_CLASSES, pretrained=False).to(DEVICE)
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ckpt = torch.load("final_model.pt", map_location=DEVICE)
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if os.path.exists("calibration.pkl"):
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with open("calibration.pkl", "rb") as f:
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return model, fv_model, calib
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ToTensorV2(),
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])
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])
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gx = cv2.Sobel(gray, cv2.CV_32F, 1, 0, ksize=3)
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gy = cv2.Sobel(gray, cv2.CV_32F, 0, 1, ksize=3)
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mag = np.sqrt(gx**2 + gy**2)
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edge_density = float(mag[bright].mean() / 255.0) if n_bright > 100 else float(mag.mean() / 255.0)
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return {"red_dominance": red_dominance, "disc_coverage": disc_coverage, "edge_density": edge_density}
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STRONG_HEUR = {"red_dominance": 0.55, "disc_coverage": 0.25, "edge_density": 0.008}
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WEAK_HEUR = {"red_dominance": 0.30, "disc_coverage": 0.12, "edge_density": 0.006}
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rgb_raw = np.array(pil_img.convert("RGB"))
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try:
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rgb = apply_clahe_lab(crop_retinal_disc(rgb_raw))
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except:
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rgb = rgb_raw
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h = fundus_heuristics(rgb)
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x = fv_tfm(image=rgb)["image"].unsqueeze(0).to(DEVICE)
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with torch.no_grad():
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strong_ok = all(h[k] >= v for k, v in STRONG_HEUR.items())
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weak_ok
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if strong_ok: return True, p_fundus, h, "Accepted (strong visual signatures)."
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if p_fundus >= 0.75: return True, p_fundus, h, f"Accepted (validator: {p_fundus*100:.1f}%)."
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if p_fundus >= 0.50 and weak_ok: return True, p_fundus, h, "Accepted (validator + heuristics)."
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if h["disc_coverage"] >= 0.25 and p_fundus >= 0.35: return True, p_fundus, h, "Accepted (clear retinal disc)."
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if p_fundus >= 0.90: return True, p_fundus, h, "Accepted (high validator confidence)."
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return False, p_fundus, h, "Image rejected. Not a valid fundus photograph."
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# =============================================================================
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# Grad-CAM
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# =============================================================================
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super().__init__()
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self.inner = inner
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def forward(self, x):
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return self.inner(x)["logits"]
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cam_model = _SingleLogit(model).to(DEVICE).eval()
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target_layers = [model.backbone.blocks[-1]] # Last block
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cam_obj = GradCAMPlusPlus(model=cam_model, target_layers=target_layers)
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def render_cam(rgb: np.ndarray, tensor: torch.Tensor, target_cls: int) -> np.ndarray:
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try:
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return (
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except:
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return
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from pytorch_grad_cam.utils.image import show_cam_on_image
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# =============================================================================
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#
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# =============================================================================
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def predict(uploaded):
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if uploaded is None:
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pil_img = PILImage.fromarray(uploaded.astype(np.uint8))
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# Gating
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accepted, p_fundus, heur, reason = gate_fundus(pil_img)
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if not accepted:
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return None, None, None, f"<div style='color:red; font-weight:bold;'>{reason}</div>"
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rgb = np.array(pil_img.convert("RGB"))
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tensor = inf_tfm(image=cv2.resize(rgb, (IMG_SIZE, IMG_SIZE)))["image"].unsqueeze(0).to(DEVICE)
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#
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with torch.no_grad():
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views = [tensor,
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for v in views:
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out = model(v)
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logits_mean = np.mean(
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coral_mean
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#
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if calib:
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else:
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ex = np.exp(logits_mean - logits_mean.max())
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probs = (ex / ex.sum())[0]
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# Fusion
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argmax_pred = int(probs.argmax())
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coral_pred
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conf = float(probs[pred])
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# Grad-CAM
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cam_img = render_cam(vis, tensor
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proc_time = time.time() -
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#
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html = f"""
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<div style="background:
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</div>
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<div style="
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return vis, cam_img, html
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# =============================================================================
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# UI
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# =============================================================================
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m3_theme = gr.themes.Soft(
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primary_hue="blue",
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secondary_hue="indigo",
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neutral_hue="slate",
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font=["
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).set(
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button_primary_background_fill="*primary_600",
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button_primary_background_fill_hover="*primary_700",
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block_title_text_weight="600",
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block_border_width="1px",
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block_shadow="0 2px
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)
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with gr.Blocks(theme=
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gr.HTML("""
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<div style="text-align:
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</div>
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""")
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with gr.Row():
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with gr.Row():
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gr.Markdown("""
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1. Upload a
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2. Click **Analyze
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3.
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*
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""")
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fn=predict,
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inputs=
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outputs=[out_vis, out_cam,
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)
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clear_btn.click(lambda: (None, None, None, ""), None, [input_img, out_vis, out_cam, out_html])
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if __name__ == "__main__":
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demo.launch(server_name="0.0.0.0", server_port=7860)
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import os
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import time
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import pickle
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import warnings
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from typing import Dict, Optional, Tuple
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|
| 6 |
|
| 7 |
import cv2
|
| 8 |
import numpy as np
|
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|
| 9 |
import torch
|
| 10 |
import torch.nn as nn
|
| 11 |
import torch.nn.functional as F
|
|
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|
| 14 |
import albumentations as A
|
| 15 |
from albumentations.pytorch import ToTensorV2
|
| 16 |
from pytorch_grad_cam import GradCAMPlusPlus
|
| 17 |
+
from pytorch_grad_cam.utils.image import show_cam_on_image
|
| 18 |
import gradio as gr
|
| 19 |
|
| 20 |
warnings.filterwarnings("ignore")
|
|
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|
| 28 |
BACKBONE = "tf_efficientnetv2_m"
|
| 29 |
FV_BACKBONE = "convnext_tiny.fb_in22k"
|
| 30 |
|
| 31 |
+
GRADE_MAP = {0: "No DR", 1: "Mild DR", 2: "Moderate DR", 3: "Severe DR", 4: "Proliferative DR"}
|
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|
| 32 |
GRADE_COLORS = ["#2ecc71", "#f1c40f", "#e67e22", "#e74c3c", "#8e44ad"]
|
| 33 |
SEVERITY_ICONS = ["π’", "π‘", "π ", "π΄", "π£"]
|
| 34 |
CLINICAL_ACTION = [
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|
| 42 |
IMAGENET_MEAN = [0.485, 0.456, 0.406]
|
| 43 |
IMAGENET_STD = [0.229, 0.224, 0.225]
|
| 44 |
|
| 45 |
+
STRONG_HEUR = {"red_dominance": 0.55, "disc_coverage": 0.25, "edge_density": 0.008}
|
| 46 |
+
WEAK_HEUR = {"red_dominance": 0.30, "disc_coverage": 0.12, "edge_density": 0.006}
|
| 47 |
+
|
| 48 |
# =============================================================================
|
| 49 |
# Model Definitions
|
| 50 |
# =============================================================================
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|
| 54 |
super().__init__()
|
| 55 |
self.p = nn.Parameter(torch.tensor(p))
|
| 56 |
self.eps = eps
|
| 57 |
+
|
| 58 |
def forward(self, x: torch.Tensor) -> torch.Tensor:
|
| 59 |
return F.adaptive_avg_pool2d(x.clamp(min=self.eps).pow(self.p), 1).pow(1.0 / self.p)
|
| 60 |
|
| 61 |
+
|
| 62 |
class CoralHead(nn.Module):
|
| 63 |
def __init__(self, in_features: int, num_classes: int):
|
| 64 |
super().__init__()
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|
| 65 |
self.linear = nn.Linear(in_features, 1, bias=False)
|
| 66 |
self.bias = nn.Parameter(torch.zeros(num_classes - 1))
|
| 67 |
+
|
| 68 |
def forward(self, x: torch.Tensor) -> torch.Tensor:
|
| 69 |
+
return self.linear(x) + self.bias
|
| 70 |
+
|
| 71 |
|
| 72 |
class DRHead(nn.Module):
|
| 73 |
def __init__(self, in_features: int, num_classes: int = 5, dropout: float = 0.3):
|
| 74 |
super().__init__()
|
| 75 |
self.net = nn.Sequential(
|
| 76 |
+
nn.Linear(in_features, 512), nn.BatchNorm1d(512), nn.SiLU(inplace=True), nn.Dropout(dropout),
|
| 77 |
+
nn.Linear(512, 256), nn.BatchNorm1d(256), nn.SiLU(inplace=True), nn.Dropout(dropout / 2),
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|
| 78 |
nn.Linear(256, num_classes),
|
| 79 |
)
|
| 80 |
+
|
| 81 |
def forward(self, x: torch.Tensor) -> torch.Tensor:
|
| 82 |
return self.net(x)
|
| 83 |
|
| 84 |
+
|
| 85 |
class DRModel(nn.Module):
|
| 86 |
def __init__(self, backbone: str = BACKBONE, num_classes: int = 5, pretrained: bool = False):
|
| 87 |
super().__init__()
|
|
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|
| 90 |
self.pool = GeM(p=3.0)
|
| 91 |
self.head_cls = DRHead(in_feat, num_classes)
|
| 92 |
self.head_coral = CoralHead(in_feat, num_classes)
|
| 93 |
+
|
| 94 |
def forward(self, x: torch.Tensor) -> Dict[str, torch.Tensor]:
|
| 95 |
+
feat = self.pool(self.backbone(x)).flatten(1)
|
|
|
|
| 96 |
return {"logits": self.head_cls(feat), "coral": self.head_coral(feat)}
|
| 97 |
|
| 98 |
+
|
| 99 |
class FundusValidator(nn.Module):
|
| 100 |
+
def __init__(self, backbone_name: str = FV_BACKBONE):
|
| 101 |
super().__init__()
|
| 102 |
+
self.backbone = timm.create_model(backbone_name, pretrained=False, num_classes=0, global_pool="avg")
|
| 103 |
+
for p in self.backbone.parameters():
|
| 104 |
+
p.requires_grad = False
|
| 105 |
with torch.no_grad():
|
| 106 |
feat_dim = self.backbone(torch.zeros(1, 3, 224, 224)).shape[1]
|
| 107 |
+
self.head = nn.Sequential(nn.Linear(feat_dim, 256), nn.GELU(), nn.Dropout(0.3), nn.Linear(256, 2))
|
| 108 |
+
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|
| 109 |
def forward(self, x: torch.Tensor) -> torch.Tensor:
|
| 110 |
+
with torch.no_grad():
|
| 111 |
+
feats = self.backbone(x)
|
| 112 |
return self.head(feats)
|
| 113 |
|
| 114 |
+
|
| 115 |
# =============================================================================
|
| 116 |
+
# Preprocessing
|
| 117 |
# =============================================================================
|
|
|
|
| 118 |
_clahe = cv2.createCLAHE(clipLimit=2.0, tileGridSize=(8, 8))
|
| 119 |
|
| 120 |
+
|
| 121 |
def apply_clahe_lab(rgb: np.ndarray) -> np.ndarray:
|
| 122 |
lab = cv2.cvtColor(rgb, cv2.COLOR_RGB2LAB)
|
| 123 |
lab[:, :, 0] = _clahe.apply(lab[:, :, 0])
|
| 124 |
return cv2.cvtColor(lab, cv2.COLOR_LAB2RGB)
|
| 125 |
|
| 126 |
+
|
| 127 |
def retinal_mask(rgb: np.ndarray) -> np.ndarray:
|
| 128 |
gray = cv2.cvtColor(rgb, cv2.COLOR_RGB2GRAY)
|
| 129 |
_, m = cv2.threshold(gray, 15, 255, cv2.THRESH_BINARY)
|
| 130 |
+
k = cv2.getStructuringElement(cv2.MORPH_ELLIPSE, (15, 15))
|
| 131 |
+
return cv2.morphologyEx(cv2.morphologyEx(m, cv2.MORPH_CLOSE, k), cv2.MORPH_OPEN, k)
|
| 132 |
+
|
|
|
|
| 133 |
|
| 134 |
def crop_retinal_disc(rgb: np.ndarray, pad: int = 10) -> np.ndarray:
|
| 135 |
+
contours, _ = cv2.findContours(retinal_mask(rgb), cv2.RETR_EXTERNAL, cv2.CHAIN_APPROX_SIMPLE)
|
| 136 |
+
if not contours:
|
| 137 |
+
return rgb
|
| 138 |
x, y, w, h = cv2.boundingRect(max(contours, key=cv2.contourArea))
|
| 139 |
x, y = max(0, x - pad), max(0, y - pad)
|
| 140 |
x2, y2 = min(rgb.shape[1], x + w + 2 * pad), min(rgb.shape[0], y + h + 2 * pad)
|
| 141 |
return rgb[y:y2, x:x2]
|
| 142 |
|
| 143 |
+
|
| 144 |
+
def fundus_heuristics(rgb: np.ndarray) -> Dict[str, float]:
|
| 145 |
+
r, g, b = rgb[..., 0].astype(np.float32), rgb[..., 1].astype(np.float32), rgb[..., 2].astype(np.float32)
|
| 146 |
+
bright = (r > 15) | (g > 15) | (b > 15)
|
| 147 |
+
n_bright = int(bright.sum())
|
| 148 |
+
red_dom = float(((r > g) & (r > b))[bright].mean()) if n_bright > 100 else float(((r > g) & (r > b)).mean())
|
| 149 |
+
disc_cov = float(retinal_mask(rgb).mean() / 255.0)
|
| 150 |
+
gx = cv2.Sobel(cv2.cvtColor(rgb, cv2.COLOR_RGB2GRAY), cv2.CV_32F, 1, 0, ksize=3)
|
| 151 |
+
gy = cv2.Sobel(cv2.cvtColor(rgb, cv2.COLOR_RGB2GRAY), cv2.CV_32F, 0, 1, ksize=3)
|
| 152 |
+
mag = np.sqrt(gx**2 + gy**2)
|
| 153 |
+
edge_den = float(mag[bright].mean() / 255.0) if n_bright > 100 else float(mag.mean() / 255.0)
|
| 154 |
+
return {"red_dominance": red_dom, "disc_coverage": disc_cov, "edge_density": edge_den}
|
| 155 |
+
|
| 156 |
|
| 157 |
# =============================================================================
|
| 158 |
+
# Model Loading
|
| 159 |
# =============================================================================
|
| 160 |
+
def load_dr_model():
|
| 161 |
+
m = DRModel(BACKBONE, NUM_CLASSES, pretrained=False).to(DEVICE)
|
|
|
|
|
|
|
| 162 |
ckpt = torch.load("final_model.pt", map_location=DEVICE)
|
| 163 |
+
state = ckpt.get("model_state", ckpt)
|
| 164 |
+
m.load_state_dict({k: v for k, v in state.items() if k in m.state_dict()}, strict=False)
|
| 165 |
+
return m.eval()
|
| 166 |
+
|
| 167 |
|
| 168 |
+
def load_fv_model():
|
| 169 |
+
m = FundusValidator(FV_BACKBONE).to(DEVICE)
|
| 170 |
+
ckpt = torch.load("fundus_validator.pt", map_location=DEVICE)
|
| 171 |
+
head_state = ckpt.get("head_state_dict", ckpt)
|
| 172 |
+
m.head.load_state_dict(head_state, strict=False)
|
| 173 |
+
return m.eval()
|
| 174 |
|
| 175 |
+
|
| 176 |
+
def load_calib():
|
| 177 |
if os.path.exists("calibration.pkl"):
|
| 178 |
with open("calibration.pkl", "rb") as f:
|
| 179 |
+
return pickle.load(f)
|
| 180 |
+
return None
|
| 181 |
|
|
|
|
| 182 |
|
| 183 |
+
print("Loading modelsβ¦")
|
| 184 |
+
model = load_dr_model()
|
| 185 |
+
fv_model = load_fv_model()
|
| 186 |
+
calib = load_calib()
|
| 187 |
+
print(f" DR model loaded | FV model loaded | calib={'yes' if calib else 'no'} | device={DEVICE}")
|
| 188 |
|
| 189 |
+
# Transforms
|
| 190 |
+
inf_tfm = A.Compose([A.Resize(IMG_SIZE, IMG_SIZE), A.Normalize(mean=IMAGENET_MEAN, std=IMAGENET_STD), ToTensorV2()])
|
| 191 |
+
fv_tfm = A.Compose([A.Resize(224, 224), A.Normalize(mean=IMAGENET_MEAN, std=IMAGENET_STD), ToTensorV2()])
|
|
|
|
|
|
|
| 192 |
|
| 193 |
+
# Grad-CAM setup
|
| 194 |
+
class _SingleLogit(nn.Module):
|
| 195 |
+
def __init__(self, inner): super().__init__(); self.inner = inner
|
| 196 |
+
def forward(self, x): return self.inner(x)["logits"]
|
|
|
|
| 197 |
|
| 198 |
+
_cam_model = _SingleLogit(model).to(DEVICE).eval()
|
| 199 |
+
try:
|
| 200 |
+
_target_layers = [model.backbone.blocks[-1]]
|
| 201 |
+
cam_obj = GradCAMPlusPlus(model=_cam_model, target_layers=_target_layers)
|
| 202 |
+
GRADCAM_OK = True
|
| 203 |
+
except Exception as e:
|
| 204 |
+
print(f"Grad-CAM init failed: {e}")
|
| 205 |
+
GRADCAM_OK = False
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 206 |
|
|
|
|
|
|
|
| 207 |
|
| 208 |
+
# =============================================================================
|
| 209 |
+
# Fundus Gating
|
| 210 |
+
# =============================================================================
|
| 211 |
+
def gate_fundus(pil_img: PILImage.Image) -> Tuple[bool, float, Dict, str]:
|
| 212 |
rgb_raw = np.array(pil_img.convert("RGB"))
|
| 213 |
try:
|
| 214 |
rgb = apply_clahe_lab(crop_retinal_disc(rgb_raw))
|
| 215 |
+
except Exception:
|
| 216 |
rgb = rgb_raw
|
| 217 |
+
|
| 218 |
h = fundus_heuristics(rgb)
|
| 219 |
x = fv_tfm(image=rgb)["image"].unsqueeze(0).to(DEVICE)
|
| 220 |
with torch.no_grad():
|
| 221 |
+
p = float(F.softmax(fv_model(x), dim=1).cpu().numpy()[0][1])
|
| 222 |
+
|
| 223 |
strong_ok = all(h[k] >= v for k, v in STRONG_HEUR.items())
|
| 224 |
+
weak_ok = all(h[k] >= v for k, v in WEAK_HEUR.items())
|
| 225 |
+
|
| 226 |
+
if strong_ok: return True, p, h, "Accepted (strong visual signatures)."
|
| 227 |
+
if p >= 0.75: return True, p, h, f"Accepted (validator: {p*100:.1f}%)."
|
| 228 |
+
if p >= 0.50 and weak_ok: return True, p, h, "Accepted (validator + heuristics)."
|
| 229 |
+
if h["disc_coverage"] >= 0.25 and p >= 0.35: return True, p, h, "Accepted (clear retinal disc)."
|
| 230 |
+
if p >= 0.90: return True, p, h, "Accepted (high validator confidence)."
|
| 231 |
+
return False, p, h, "Not a fundus image. Please upload a colour retinal fundus photograph."
|
| 232 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 233 |
|
| 234 |
# =============================================================================
|
| 235 |
+
# Grad-CAM Rendering
|
| 236 |
# =============================================================================
|
| 237 |
+
def render_cam(vis: np.ndarray, tensor: torch.Tensor) -> Optional[np.ndarray]:
|
| 238 |
+
if not GRADCAM_OK:
|
| 239 |
+
return None
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 240 |
try:
|
| 241 |
+
gc = cam_obj(input_tensor=tensor, targets=None)[0, :]
|
| 242 |
+
overlay = show_cam_on_image(vis.astype(np.float32) / 255.0, gc, use_rgb=True)
|
| 243 |
+
return (overlay * 255).astype(np.uint8)
|
| 244 |
+
except Exception:
|
| 245 |
+
return None
|
| 246 |
|
|
|
|
| 247 |
|
| 248 |
# =============================================================================
|
| 249 |
+
# Inference
|
| 250 |
# =============================================================================
|
|
|
|
| 251 |
def predict(uploaded):
|
| 252 |
+
t0 = time.time()
|
| 253 |
+
if uploaded is None:
|
| 254 |
+
return None, None, "<p style='color:#666;padding:20px'>Upload a fundus image to begin.</p>"
|
| 255 |
|
| 256 |
pil_img = PILImage.fromarray(uploaded.astype(np.uint8))
|
|
|
|
|
|
|
| 257 |
accepted, p_fundus, heur, reason = gate_fundus(pil_img)
|
|
|
|
|
|
|
| 258 |
|
| 259 |
+
if not accepted:
|
| 260 |
+
rd = heur.get("red_dominance", 0)
|
| 261 |
+
dc = heur.get("disc_coverage", 0)
|
| 262 |
+
ed = heur.get("edge_density", 0)
|
| 263 |
+
html = f"""
|
| 264 |
+
<div style="padding:20px;border-radius:10px;background:#fdecea;color:#8a1a14;
|
| 265 |
+
border:1px solid #f5c6c2;font-family:sans-serif">
|
| 266 |
+
<h3 style="margin:0 0 8px">β οΈ Image Rejected</h3>
|
| 267 |
+
<p style="margin:0">{reason}</p>
|
| 268 |
+
<div style="margin-top:12px;font-size:12px;color:#555">
|
| 269 |
+
<strong>Validator score:</strong> {p_fundus*100:.1f}% (need β₯75%)<br>
|
| 270 |
+
<strong>Red dominance:</strong> {rd:.3f} (need β₯{WEAK_HEUR['red_dominance']:.2f})
|
| 271 |
+
{'β' if rd >= WEAK_HEUR['red_dominance'] else 'β'}<br>
|
| 272 |
+
<strong>Disc coverage:</strong> {dc:.3f} (need β₯{WEAK_HEUR['disc_coverage']:.2f})
|
| 273 |
+
{'β' if dc >= WEAK_HEUR['disc_coverage'] else 'β'}<br>
|
| 274 |
+
<strong>Edge density:</strong> {ed:.4f} (need β₯{WEAK_HEUR['edge_density']:.3f})
|
| 275 |
+
{'β' if ed >= WEAK_HEUR['edge_density'] else 'β'}
|
| 276 |
+
</div>
|
| 277 |
+
</div>"""
|
| 278 |
+
return None, None, html
|
| 279 |
+
|
| 280 |
+
# Pre-process
|
| 281 |
rgb = np.array(pil_img.convert("RGB"))
|
| 282 |
+
try:
|
| 283 |
+
rgb = apply_clahe_lab(crop_retinal_disc(rgb))
|
| 284 |
+
except Exception:
|
| 285 |
+
pass
|
| 286 |
+
vis = cv2.resize(rgb, (320, 320))
|
| 287 |
tensor = inf_tfm(image=cv2.resize(rgb, (IMG_SIZE, IMG_SIZE)))["image"].unsqueeze(0).to(DEVICE)
|
| 288 |
|
| 289 |
+
# 4-view TTA
|
| 290 |
with torch.no_grad():
|
| 291 |
+
views = [tensor,
|
| 292 |
+
torch.flip(tensor, dims=[-1]),
|
| 293 |
+
torch.flip(tensor, dims=[-2]),
|
| 294 |
+
torch.rot90(tensor, 2, dims=(-2, -1))]
|
| 295 |
+
logits_all, coral_all = [], []
|
| 296 |
for v in views:
|
| 297 |
out = model(v)
|
| 298 |
+
logits_all.append(out["logits"].cpu().numpy())
|
| 299 |
+
coral_all.append(torch.sigmoid(out["coral"]).cpu().numpy())
|
| 300 |
+
|
| 301 |
+
logits_mean = np.mean(logits_all, axis=0) # (1, 5)
|
| 302 |
+
coral_mean = np.mean(coral_all, axis=0) # (1, 4)
|
| 303 |
+
|
| 304 |
+
# Probabilities
|
| 305 |
+
if calib is not None:
|
| 306 |
+
try:
|
| 307 |
+
probs = calib.apply(logits_mean)[0]
|
| 308 |
+
except Exception:
|
| 309 |
+
ex = np.exp(logits_mean - logits_mean.max())
|
| 310 |
+
probs = (ex / ex.sum())[0]
|
| 311 |
else:
|
| 312 |
ex = np.exp(logits_mean - logits_mean.max())
|
| 313 |
probs = (ex / ex.sum())[0]
|
| 314 |
|
| 315 |
+
# Fusion: CORAL ordinal + softmax
|
| 316 |
argmax_pred = int(probs.argmax())
|
| 317 |
+
coral_pred = int((coral_mean[0] > 0.5).sum())
|
| 318 |
+
coral_conf = float(coral_mean[0, coral_pred - 1]) if coral_pred > 0 else 1.0
|
| 319 |
+
pred = coral_pred if coral_conf > float(probs[argmax_pred]) else argmax_pred
|
| 320 |
+
pred = max(0, min(4, pred))
|
| 321 |
conf = float(probs[pred])
|
| 322 |
|
| 323 |
# Grad-CAM
|
| 324 |
+
cam_img = render_cam(vis, tensor)
|
| 325 |
+
|
| 326 |
+
proc_time = time.time() - t0
|
| 327 |
+
|
| 328 |
+
# Build probability bars
|
| 329 |
+
bar_html = ""
|
| 330 |
+
for i, (lbl, col) in enumerate(zip(GRADE_MAP.values(), GRADE_COLORS)):
|
| 331 |
+
w = float(probs[i]) * 100
|
| 332 |
+
weight = "700" if i == pred else "400"
|
| 333 |
+
bar_html += f"""
|
| 334 |
+
<div style="margin-bottom:6px">
|
| 335 |
+
<div style="display:flex;justify-content:space-between;font-size:13px;font-weight:{weight}">
|
| 336 |
+
<span>{SEVERITY_ICONS[i]} {lbl}</span><span>{w:.1f}%</span>
|
| 337 |
+
</div>
|
| 338 |
+
<div style="height:6px;background:#eee;border-radius:3px;overflow:hidden">
|
| 339 |
+
<div style="width:{w}%;background:{col};height:100%"></div>
|
| 340 |
+
</div>
|
| 341 |
+
</div>"""
|
| 342 |
+
|
| 343 |
html = f"""
|
| 344 |
+
<div style="background:#fff;padding:20px;border-radius:14px;
|
| 345 |
+
box-shadow:0 4px 16px rgba(0,0,0,.08);
|
| 346 |
+
font-family:'Segoe UI',Tahoma,sans-serif;line-height:1.5">
|
| 347 |
+
|
| 348 |
+
<!-- Grade header -->
|
| 349 |
+
<div style="display:flex;align-items:center;gap:14px;margin-bottom:16px">
|
| 350 |
+
<span style="font-size:52px">{SEVERITY_ICONS[pred]}</span>
|
| 351 |
+
<div>
|
| 352 |
+
<div style="font-size:22px;font-weight:700;color:{GRADE_COLORS[pred]}">{GRADE_MAP[pred]}</div>
|
| 353 |
+
<div style="font-size:13px;color:#888">Grade {pred} / 4 Β· ICDR Scale</div>
|
| 354 |
</div>
|
| 355 |
+
</div>
|
| 356 |
+
|
| 357 |
+
<!-- Confidence bars -->
|
| 358 |
+
<div style="background:#f8f9fa;border-radius:8px;padding:12px;margin-bottom:14px">
|
| 359 |
+
<div style="font-size:13px;font-weight:600;color:#444;margin-bottom:8px">Grade Probabilities</div>
|
| 360 |
+
{bar_html}
|
| 361 |
+
</div>
|
| 362 |
+
|
| 363 |
+
<!-- Clinical action -->
|
| 364 |
+
<div style="padding:12px;background:#f0f4ff;border-left:4px solid {GRADE_COLORS[pred]};
|
| 365 |
+
border-radius:6px;margin-bottom:14px">
|
| 366 |
+
<div style="font-size:12px;font-weight:600;color:#555;margin-bottom:4px">CLINICAL RECOMMENDATION</div>
|
| 367 |
+
<div style="font-size:14px;color:#222">{CLINICAL_ACTION[pred]}</div>
|
| 368 |
+
</div>
|
| 369 |
+
|
| 370 |
+
<!-- Metrics footer -->
|
| 371 |
+
<div style="display:flex;justify-content:space-between;font-size:11px;color:#aaa;
|
| 372 |
+
border-top:1px solid #eee;padding-top:10px">
|
| 373 |
+
<span>β± Processing: <strong>{proc_time:.2f}s</strong></span>
|
| 374 |
+
<span>π Validator: <strong>{p_fundus*100:.1f}%</strong></span>
|
| 375 |
+
<span>π― Confidence: <strong>{conf*100:.1f}%</strong></span>
|
| 376 |
+
</div>
|
| 377 |
+
</div>"""
|
| 378 |
+
|
| 379 |
return vis, cam_img, html
|
| 380 |
|
| 381 |
+
|
| 382 |
# =============================================================================
|
| 383 |
+
# Gradio UI β Material Design 3
|
| 384 |
# =============================================================================
|
| 385 |
+
m3 = gr.themes.Soft(
|
|
|
|
| 386 |
primary_hue="blue",
|
| 387 |
secondary_hue="indigo",
|
| 388 |
neutral_hue="slate",
|
| 389 |
+
font=["Inter", "Outfit", "system-ui"],
|
| 390 |
).set(
|
| 391 |
button_primary_background_fill="*primary_600",
|
| 392 |
button_primary_background_fill_hover="*primary_700",
|
| 393 |
block_title_text_weight="600",
|
| 394 |
block_border_width="1px",
|
| 395 |
+
block_shadow="0 2px 8px rgba(0,0,0,0.06)",
|
| 396 |
)
|
| 397 |
|
| 398 |
+
with gr.Blocks(theme=m3, title="DR Grading AI β Clinical Decision Support") as demo:
|
| 399 |
+
|
| 400 |
gr.HTML("""
|
| 401 |
+
<div style="text-align:center;padding:28px 20px 22px;
|
| 402 |
+
background:linear-gradient(135deg,#1A73E8 0%,#0D47A1 100%);
|
| 403 |
+
color:#fff;border-radius:16px;margin-bottom:20px">
|
| 404 |
+
<div style="font-size:2.4em;font-weight:800;letter-spacing:-0.5px">
|
| 405 |
+
π Diabetic Retinopathy Grading
|
| 406 |
+
</div>
|
| 407 |
+
<div style="margin-top:8px;opacity:.88;font-size:1.05em">
|
| 408 |
+
EfficientNetV2-M Β· CORAL Ordinal Β· Grad-CAM++ Β· 4-View TTA
|
| 409 |
+
</div>
|
| 410 |
+
<div style="margin-top:6px;opacity:.7;font-size:.85em">
|
| 411 |
+
For research & educational use only β not a medical device
|
| 412 |
+
</div>
|
| 413 |
</div>
|
| 414 |
""")
|
| 415 |
|
| 416 |
+
with gr.Row(equal_height=True):
|
| 417 |
+
# ββ LEFT PANEL ββββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 418 |
+
with gr.Column(scale=1, min_width=340):
|
| 419 |
+
inp = gr.Image(
|
| 420 |
+
label="Upload Retinal Fundus Photograph",
|
| 421 |
+
type="numpy",
|
| 422 |
+
height=380,
|
| 423 |
+
sources=["upload", "clipboard"],
|
| 424 |
+
)
|
| 425 |
with gr.Row():
|
| 426 |
+
btn_clear = gr.Button("π Clear", variant="secondary", size="sm")
|
| 427 |
+
btn_analyze = gr.Button("π¬ Analyze", variant="primary", size="lg")
|
| 428 |
+
|
| 429 |
gr.Markdown("""
|
| 430 |
+
**How to use**
|
| 431 |
+
1. Upload a colour fundus photograph (JPEG / PNG)
|
| 432 |
+
2. Click **Analyze** β the AI validates it first
|
| 433 |
+
3. Review the grade, heatmap, and recommendation
|
| 434 |
+
|
| 435 |
+
> *Grades 0β4 follow the International Clinical DR (ICDR) severity scale.*
|
| 436 |
""")
|
| 437 |
|
| 438 |
+
# ββ RIGHT PANEL βββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 439 |
+
with gr.Column(scale=1, min_width=340):
|
| 440 |
+
with gr.Row():
|
| 441 |
+
out_vis = gr.Image(label="Enhanced Fundus", interactive=False, height=200)
|
| 442 |
+
out_cam = gr.Image(label="Pathology Heatmap (Grad-CAM++)", interactive=False, height=200)
|
| 443 |
+
out_report = gr.HTML()
|
| 444 |
|
| 445 |
+
# ββ Events ββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββββ
|
| 446 |
+
btn_analyze.click(
|
| 447 |
fn=predict,
|
| 448 |
+
inputs=inp,
|
| 449 |
+
outputs=[out_vis, out_cam, out_report],
|
| 450 |
+
)
|
| 451 |
+
btn_clear.click(
|
| 452 |
+
fn=lambda: (None, None, None, ""),
|
| 453 |
+
inputs=[],
|
| 454 |
+
outputs=[inp, out_vis, out_cam, out_report],
|
| 455 |
)
|
|
|
|
|
|
|
| 456 |
|
| 457 |
if __name__ == "__main__":
|
| 458 |
demo.launch(server_name="0.0.0.0", server_port=7860)
|