add knowledge graph visualization section to user guide

fix: replace gdown with hf_hub_download for dataset file retrieval

fix to avoid overwriting graph edges during inference + add prediction generation threshold

updated info message on visualization page

added filtering options for second-degree edge visualization

include second degree edges (major update)

added legend for kg visualization

added kg visualization feature

color generate predictions button red

adjust generate predictions button placement

added hyperlinks to uniprot and go ids

enable sidebar fix

update ProtHGT_app.py

fix sidebar enable/disable

enable sidebar after predictions are made

show selected proteins when using example query

make multiselect box scrollable and discard view selected proteins container to only keep download button

better explain search process

explain the usage of search proteins menu

removed redundant button

new function to disable sidebar when generating predictions

when generating predictions disable the sidebar

Update ProtHGT_app.py

make protein id search matching case insensitive

fix example proteins bug

make random choice of example proteins constant for each session

disable generate predictions button when there are no new inputs

discard the manual reset button

added example query option

added fuzzy search feature

added new future work point

updated requirements

added env loading placeholder

added filtering with go ids

added pagination to result page

show discarded proteins in expander

updated new protein warning message

Update ProtHGT_app.py

increased max protein count to 1000

added info about upcoming features, fixed reset button

fixed numpy error added time calc for env setup

setup.sh must stay

try to discard setup.sh

quick fix to give warning while waiting for env to build

updated requirements

updated requirements

another requirements fix

working app

initialize app