Update app.py
Browse files
app.py
CHANGED
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@@ -620,7 +620,7 @@ with gr.Blocks(css=css, title="K R&D Lab · S1 Biomedical") as demo:
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o_v = gr.HTML()
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gr.Examples([["BRCA1:p.R1699Q",0.82,0.05,0.0012],
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["TP53:p.R248W",0.00,1.00,0.0],
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["BRCA2:p.D2723A",0.01,0.98,0.0]], inputs=[hgvs,sift,pp,gn])
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b_v.click(predict_variant, [hgvs,sift,pp,gn], o_v)
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with gr.TabItem("S1-R1b · Somatic 🔶"):
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@@ -643,7 +643,7 @@ with gr.Blocks(css=css, title="K R&D Lab · S1 Biomedical") as demo:
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b1 = gr.Button("Find miRNAs", variant="primary")
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o1 = gr.Dataframe(label="Top 5 downregulated miRNAs")
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gr.Examples([["BRCA2"],["BRCA1"],["TP53"]], inputs=[g1])
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b1.click(predict_mirna, g1, o1)
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with gr.TabItem("S1-R3 · siRNA"):
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gr.HTML(proj_badge("S1-B · PHYLO-RNA · S1-R3",
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@@ -651,8 +651,8 @@ with gr.Blocks(css=css, title="K R&D Lab · S1 Biomedical") as demo:
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g2 = gr.Dropdown(["LUAD","BRCA","COAD"], value="LUAD", label="Cancer type")
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b2 = gr.Button("Find Targets", variant="primary")
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o2 = gr.Dataframe(label="Top 5 synthetic lethal targets")
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gr.Examples([["LUAD"],["BRCA"],["COAD"]], inputs=[g2])
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b2.click(predict_sirna, g2, o2)
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with gr.TabItem("S1-R4 · lncRNA + ASO"):
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gr.HTML(proj_badge("S1-B · PHYLO-RNA · S1-R4 + S1-R4b",
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@@ -680,7 +680,7 @@ with gr.Blocks(css=css, title="K R&D Lab · S1 Biomedical") as demo:
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o4t = gr.Dataframe(label="Top 5 candidates")
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o4p = gr.Image(label="Binding scores")
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gr.Examples([["P1 (hairpin loop)"],["P10 (G-quadruplex)"]], inputs=[g4])
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b4.click(predict_drug, g4, [o4t, o4p])
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with gr.TabItem("S1-R13 · Frontier 🔴⭐"):
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gr.HTML(proj_badge("S1-C · PHYLO-DRUG · S1-R13",
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@@ -828,7 +828,7 @@ with gr.Blocks(css=css, title="K R&D Lab · S1 Biomedical") as demo:
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sort_d = gr.Radio(["Frequency", "Drug status"], value="Frequency", label="Sort by")
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b_dv = gr.Button("Load DIPG Variants", variant="primary")
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o_dv = gr.Dataframe(label="H3K27M co-mutations · PBTA/GSE126319")
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b_dv.click(dipg_variants, sort_d, o_dv)
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with gr.TabItem("CSF LNP Formulations"):
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with gr.Row():
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d_peg = gr.Slider(0.5, 3.0, value=1.5, step=0.1, label="PEG mol%")
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o_v = gr.HTML()
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gr.Examples([["BRCA1:p.R1699Q",0.82,0.05,0.0012],
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["TP53:p.R248W",0.00,1.00,0.0],
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["BRCA2:p.D2723A",0.01,0.98,0.0]], inputs=[hgvs,sift,pp,gn], cache_examples=False)
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b_v.click(predict_variant, [hgvs,sift,pp,gn], o_v)
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with gr.TabItem("S1-R1b · Somatic 🔶"):
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b1 = gr.Button("Find miRNAs", variant="primary")
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o1 = gr.Dataframe(label="Top 5 downregulated miRNAs")
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gr.Examples([["BRCA2"],["BRCA1"],["TP53"]], inputs=[g1])
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b1.click(predict_mirna, [g1], o1)
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with gr.TabItem("S1-R3 · siRNA"):
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gr.HTML(proj_badge("S1-B · PHYLO-RNA · S1-R3",
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g2 = gr.Dropdown(["LUAD","BRCA","COAD"], value="LUAD", label="Cancer type")
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b2 = gr.Button("Find Targets", variant="primary")
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o2 = gr.Dataframe(label="Top 5 synthetic lethal targets")
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gr.Examples([["LUAD"],["BRCA"],["COAD"]], inputs=[g2], cache_examples=False)
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b2.click(predict_sirna, [g2], o2)
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with gr.TabItem("S1-R4 · lncRNA + ASO"):
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gr.HTML(proj_badge("S1-B · PHYLO-RNA · S1-R4 + S1-R4b",
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o4t = gr.Dataframe(label="Top 5 candidates")
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o4p = gr.Image(label="Binding scores")
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gr.Examples([["P1 (hairpin loop)"],["P10 (G-quadruplex)"]], inputs=[g4])
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b4.click(predict_drug, [g4], [o4t, o4p])
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with gr.TabItem("S1-R13 · Frontier 🔴⭐"):
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gr.HTML(proj_badge("S1-C · PHYLO-DRUG · S1-R13",
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sort_d = gr.Radio(["Frequency", "Drug status"], value="Frequency", label="Sort by")
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b_dv = gr.Button("Load DIPG Variants", variant="primary")
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o_dv = gr.Dataframe(label="H3K27M co-mutations · PBTA/GSE126319")
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b_dv.click(dipg_variants, [sort_d], o_dv)
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with gr.TabItem("CSF LNP Formulations"):
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with gr.Row():
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d_peg = gr.Slider(0.5, 3.0, value=1.5, step=0.1, label="PEG mol%")
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