TEZv commited on
Commit
02a60df
·
verified ·
1 Parent(s): a925242

Update app.py

Browse files
Files changed (1) hide show
  1. app.py +6 -6
app.py CHANGED
@@ -620,7 +620,7 @@ with gr.Blocks(css=css, title="K R&D Lab · S1 Biomedical") as demo:
620
  o_v = gr.HTML()
621
  gr.Examples([["BRCA1:p.R1699Q",0.82,0.05,0.0012],
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  ["TP53:p.R248W",0.00,1.00,0.0],
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- ["BRCA2:p.D2723A",0.01,0.98,0.0]], inputs=[hgvs,sift,pp,gn])
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  b_v.click(predict_variant, [hgvs,sift,pp,gn], o_v)
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626
  with gr.TabItem("S1-R1b · Somatic 🔶"):
@@ -643,7 +643,7 @@ with gr.Blocks(css=css, title="K R&D Lab · S1 Biomedical") as demo:
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  b1 = gr.Button("Find miRNAs", variant="primary")
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  o1 = gr.Dataframe(label="Top 5 downregulated miRNAs")
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  gr.Examples([["BRCA2"],["BRCA1"],["TP53"]], inputs=[g1])
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- b1.click(predict_mirna, g1, o1)
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  with gr.TabItem("S1-R3 · siRNA"):
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  gr.HTML(proj_badge("S1-B · PHYLO-RNA · S1-R3",
@@ -651,8 +651,8 @@ with gr.Blocks(css=css, title="K R&D Lab · S1 Biomedical") as demo:
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  g2 = gr.Dropdown(["LUAD","BRCA","COAD"], value="LUAD", label="Cancer type")
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  b2 = gr.Button("Find Targets", variant="primary")
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  o2 = gr.Dataframe(label="Top 5 synthetic lethal targets")
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- gr.Examples([["LUAD"],["BRCA"],["COAD"]], inputs=[g2])
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- b2.click(predict_sirna, g2, o2)
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  with gr.TabItem("S1-R4 · lncRNA + ASO"):
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  gr.HTML(proj_badge("S1-B · PHYLO-RNA · S1-R4 + S1-R4b",
@@ -680,7 +680,7 @@ with gr.Blocks(css=css, title="K R&D Lab · S1 Biomedical") as demo:
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  o4t = gr.Dataframe(label="Top 5 candidates")
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  o4p = gr.Image(label="Binding scores")
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  gr.Examples([["P1 (hairpin loop)"],["P10 (G-quadruplex)"]], inputs=[g4])
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- b4.click(predict_drug, g4, [o4t, o4p])
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  with gr.TabItem("S1-R13 · Frontier 🔴⭐"):
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  gr.HTML(proj_badge("S1-C · PHYLO-DRUG · S1-R13",
@@ -828,7 +828,7 @@ with gr.Blocks(css=css, title="K R&D Lab · S1 Biomedical") as demo:
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  sort_d = gr.Radio(["Frequency", "Drug status"], value="Frequency", label="Sort by")
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  b_dv = gr.Button("Load DIPG Variants", variant="primary")
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  o_dv = gr.Dataframe(label="H3K27M co-mutations · PBTA/GSE126319")
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- b_dv.click(dipg_variants, sort_d, o_dv)
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  with gr.TabItem("CSF LNP Formulations"):
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  with gr.Row():
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  d_peg = gr.Slider(0.5, 3.0, value=1.5, step=0.1, label="PEG mol%")
 
620
  o_v = gr.HTML()
621
  gr.Examples([["BRCA1:p.R1699Q",0.82,0.05,0.0012],
622
  ["TP53:p.R248W",0.00,1.00,0.0],
623
+ ["BRCA2:p.D2723A",0.01,0.98,0.0]], inputs=[hgvs,sift,pp,gn], cache_examples=False)
624
  b_v.click(predict_variant, [hgvs,sift,pp,gn], o_v)
625
 
626
  with gr.TabItem("S1-R1b · Somatic 🔶"):
 
643
  b1 = gr.Button("Find miRNAs", variant="primary")
644
  o1 = gr.Dataframe(label="Top 5 downregulated miRNAs")
645
  gr.Examples([["BRCA2"],["BRCA1"],["TP53"]], inputs=[g1])
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+ b1.click(predict_mirna, [g1], o1)
647
 
648
  with gr.TabItem("S1-R3 · siRNA"):
649
  gr.HTML(proj_badge("S1-B · PHYLO-RNA · S1-R3",
 
651
  g2 = gr.Dropdown(["LUAD","BRCA","COAD"], value="LUAD", label="Cancer type")
652
  b2 = gr.Button("Find Targets", variant="primary")
653
  o2 = gr.Dataframe(label="Top 5 synthetic lethal targets")
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+ gr.Examples([["LUAD"],["BRCA"],["COAD"]], inputs=[g2], cache_examples=False)
655
+ b2.click(predict_sirna, [g2], o2)
656
 
657
  with gr.TabItem("S1-R4 · lncRNA + ASO"):
658
  gr.HTML(proj_badge("S1-B · PHYLO-RNA · S1-R4 + S1-R4b",
 
680
  o4t = gr.Dataframe(label="Top 5 candidates")
681
  o4p = gr.Image(label="Binding scores")
682
  gr.Examples([["P1 (hairpin loop)"],["P10 (G-quadruplex)"]], inputs=[g4])
683
+ b4.click(predict_drug, [g4], [o4t, o4p])
684
 
685
  with gr.TabItem("S1-R13 · Frontier 🔴⭐"):
686
  gr.HTML(proj_badge("S1-C · PHYLO-DRUG · S1-R13",
 
828
  sort_d = gr.Radio(["Frequency", "Drug status"], value="Frequency", label="Sort by")
829
  b_dv = gr.Button("Load DIPG Variants", variant="primary")
830
  o_dv = gr.Dataframe(label="H3K27M co-mutations · PBTA/GSE126319")
831
+ b_dv.click(dipg_variants, [sort_d], o_dv)
832
  with gr.TabItem("CSF LNP Formulations"):
833
  with gr.Row():
834
  d_peg = gr.Slider(0.5, 3.0, value=1.5, step=0.1, label="PEG mol%")