Spaces:
Runtime error
Runtime error
Update app.py
Browse files
app.py
CHANGED
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@@ -1,15 +1,916 @@
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import numpy as np
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| 2 |
import gradio as gr
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| 1 |
+
import os, re, random, json
|
| 2 |
import numpy as np
|
| 3 |
+
import pandas as pd
|
| 4 |
+
import torch
|
| 5 |
+
import torch.nn as nn
|
| 6 |
+
import torch.nn.functional as F
|
| 7 |
+
from torch.utils.data import Dataset, DataLoader
|
| 8 |
+
|
| 9 |
+
from torch.optim import Optimizer, Adam, AdamW, SGD
|
| 10 |
+
from transformers import AutoTokenizer, AutoModel, get_linear_schedule_with_warmup
|
| 11 |
+
from datasets import load_dataset
|
| 12 |
+
from sklearn.feature_extraction.text import TfidfVectorizer
|
| 13 |
+
from sklearn.metrics import classification_report, confusion_matrix, f1_score
|
| 14 |
+
import matplotlib.pyplot as plt
|
| 15 |
+
import matplotlib.patches as mpatches
|
| 16 |
+
import seaborn as sns
|
| 17 |
+
import timm
|
| 18 |
+
import torchvision
|
| 19 |
+
import torchvision.transforms as transforms
|
| 20 |
+
from torchvision.datasets import ImageFolder
|
| 21 |
+
from collections import Counter
|
| 22 |
+
from torchvision.transforms import ToTensor
|
| 23 |
+
from torchmetrics import MeanMetric, Accuracy
|
| 24 |
+
from torchmetrics import ConfusionMatrix, Accuracy, Precision, Recall, F1Score
|
| 25 |
+
|
| 26 |
+
from sklearn.model_selection import train_test_split
|
| 27 |
+
from pathlib import Path
|
| 28 |
+
|
| 29 |
+
from tqdm import tqdm
|
| 30 |
+
from typing import Tuple, Union, Callable
|
| 31 |
+
|
| 32 |
import gradio as gr
|
| 33 |
|
| 34 |
+
from PIL import Image
|
| 35 |
+
# Ensure dataset outputs images to the same size
|
| 36 |
+
# because the model expects the input to be consistent
|
| 37 |
+
from torchvision.transforms import v2
|
| 38 |
+
import random
|
| 39 |
+
from glob import glob
|
| 40 |
+
|
| 41 |
+
|
| 42 |
+
class CNN32(nn.Module):
|
| 43 |
+
"""
|
| 44 |
+
32-layer CNN - 4 blocks of 8 conv layers each.
|
| 45 |
+
Channels: Block1 = 32 Block2 = 64 Block3 = 128 Block4 = 256
|
| 46 |
+
Spatial: 224 -> 112 -> 56 -> 28 -> 14 -> AdaptiveAvgPool(1)
|
| 47 |
+
|
| 48 |
+
BatchNorm added after every conv essential bcause
|
| 49 |
+
gradients vanish through 32 layers and the network
|
| 50 |
+
fails to train (this is exactly why ResNet was invented).
|
| 51 |
+
|
| 52 |
+
https://d2l.ai/chapter_convolutional-modern/batch-norm.html
|
| 53 |
+
https://docs.pytorch.org/docs/2.12/generated/torch.nn.BatchNorm2d.html
|
| 54 |
+
https://arxiv.org/pdf/1502.03167
|
| 55 |
+
"""
|
| 56 |
+
|
| 57 |
+
@property
|
| 58 |
+
def has_backbone(): return False
|
| 59 |
+
|
| 60 |
+
def __init__(self, num_classes=8):
|
| 61 |
+
super().__init__()
|
| 62 |
+
|
| 63 |
+
self.features = nn.Sequential(
|
| 64 |
+
# Block 1: 8 convolution & pooling layers, 32 channels
|
| 65 |
+
nn.LazyConv2d(32, kernel_size=3, stride=1, padding=1),
|
| 66 |
+
nn.BatchNorm2d(32),
|
| 67 |
+
nn.ReLU(),
|
| 68 |
+
|
| 69 |
+
nn.LazyConv2d(32, kernel_size=3, stride=1, padding=1),
|
| 70 |
+
nn.BatchNorm2d(32),
|
| 71 |
+
nn.ReLU(),
|
| 72 |
+
|
| 73 |
+
nn.LazyConv2d(32, kernel_size=3, stride=1, padding=1),
|
| 74 |
+
nn.BatchNorm2d(32),
|
| 75 |
+
nn.ReLU(),
|
| 76 |
+
|
| 77 |
+
nn.LazyConv2d(32, kernel_size=3, stride=1, padding=1),
|
| 78 |
+
nn.BatchNorm2d(32),
|
| 79 |
+
nn.ReLU(),
|
| 80 |
+
|
| 81 |
+
nn.LazyConv2d(32, kernel_size=3, stride=1, padding=1),
|
| 82 |
+
nn.BatchNorm2d(32),
|
| 83 |
+
nn.ReLU(),
|
| 84 |
+
|
| 85 |
+
nn.LazyConv2d(32, kernel_size=3, stride=1, padding=1),
|
| 86 |
+
nn.BatchNorm2d(32),
|
| 87 |
+
nn.ReLU(),
|
| 88 |
+
|
| 89 |
+
nn.LazyConv2d(32, kernel_size=3, stride=1, padding=1),
|
| 90 |
+
nn.BatchNorm2d(32),
|
| 91 |
+
nn.ReLU(),
|
| 92 |
+
|
| 93 |
+
nn.LazyConv2d(32, kernel_size=3, stride=1, padding=1),
|
| 94 |
+
nn.BatchNorm2d(32),
|
| 95 |
+
nn.ReLU(),
|
| 96 |
+
|
| 97 |
+
nn.MaxPool2d(kernel_size=2), # from 224 to 112
|
| 98 |
+
nn.Dropout2d(0.1),
|
| 99 |
+
|
| 100 |
+
# Block 1: 8 convolution & pooling layers, 64 channels
|
| 101 |
+
nn.LazyConv2d(64, kernel_size=3, stride=1, padding=1),
|
| 102 |
+
nn.BatchNorm2d(64),
|
| 103 |
+
nn.ReLU(),
|
| 104 |
+
|
| 105 |
+
nn.LazyConv2d(64, kernel_size=3, stride=1, padding=1),
|
| 106 |
+
nn.BatchNorm2d(64),
|
| 107 |
+
nn.ReLU(),
|
| 108 |
+
|
| 109 |
+
nn.LazyConv2d(64, kernel_size=3, stride=1, padding=1),
|
| 110 |
+
nn.BatchNorm2d(64),
|
| 111 |
+
nn.ReLU(),
|
| 112 |
+
|
| 113 |
+
nn.LazyConv2d(64, kernel_size=3, stride=1, padding=1),
|
| 114 |
+
nn.BatchNorm2d(64),
|
| 115 |
+
nn.ReLU(),
|
| 116 |
+
|
| 117 |
+
nn.LazyConv2d(64, kernel_size=3, stride=1, padding=1),
|
| 118 |
+
nn.BatchNorm2d(64),
|
| 119 |
+
nn.ReLU(),
|
| 120 |
+
|
| 121 |
+
nn.LazyConv2d(64, kernel_size=3, stride=1, padding=1),
|
| 122 |
+
nn.BatchNorm2d(64),
|
| 123 |
+
nn.ReLU(),
|
| 124 |
+
|
| 125 |
+
nn.LazyConv2d(64, kernel_size=3, stride=1, padding=1),
|
| 126 |
+
nn.BatchNorm2d(64),
|
| 127 |
+
nn.ReLU(),
|
| 128 |
+
|
| 129 |
+
nn.LazyConv2d(64, kernel_size=3, stride=1, padding=1),
|
| 130 |
+
nn.BatchNorm2d(64),
|
| 131 |
+
nn.ReLU(),
|
| 132 |
+
|
| 133 |
+
nn.MaxPool2d(kernel_size=2), # from 112 to 56
|
| 134 |
+
nn.Dropout2d(0.2),
|
| 135 |
+
|
| 136 |
+
# Block 3: 8 convolution & pooling layers, 128 channels
|
| 137 |
+
nn.LazyConv2d(128, kernel_size=3, stride=1, padding=1),
|
| 138 |
+
nn.BatchNorm2d(128),
|
| 139 |
+
nn.ReLU(),
|
| 140 |
+
|
| 141 |
+
nn.LazyConv2d(128, kernel_size=3, stride=1, padding=1),
|
| 142 |
+
nn.BatchNorm2d(128),
|
| 143 |
+
nn.ReLU(),
|
| 144 |
+
|
| 145 |
+
nn.LazyConv2d(128, kernel_size=3, stride=1, padding=1),
|
| 146 |
+
nn.BatchNorm2d(128),
|
| 147 |
+
nn.ReLU(),
|
| 148 |
+
|
| 149 |
+
nn.LazyConv2d(128, kernel_size=3, stride=1, padding=1),
|
| 150 |
+
nn.BatchNorm2d(128),
|
| 151 |
+
nn.ReLU(),
|
| 152 |
+
|
| 153 |
+
nn.LazyConv2d(128, kernel_size=3, stride=1, padding=1),
|
| 154 |
+
nn.BatchNorm2d(128),
|
| 155 |
+
nn.ReLU(),
|
| 156 |
+
|
| 157 |
+
nn.LazyConv2d(128, kernel_size=3, stride=1, padding=1),
|
| 158 |
+
nn.BatchNorm2d(128),
|
| 159 |
+
nn.ReLU(),
|
| 160 |
+
|
| 161 |
+
nn.LazyConv2d(128, kernel_size=3, stride=1, padding=1),
|
| 162 |
+
nn.BatchNorm2d(128),
|
| 163 |
+
nn.ReLU(),
|
| 164 |
+
|
| 165 |
+
nn.LazyConv2d(128, kernel_size=3, stride=1, padding=1),
|
| 166 |
+
nn.BatchNorm2d(128),
|
| 167 |
+
nn.ReLU(),
|
| 168 |
+
|
| 169 |
+
nn.MaxPool2d(kernel_size=2), # from 56 to 28
|
| 170 |
+
nn.Dropout2d(0.2),
|
| 171 |
+
|
| 172 |
+
# Block 4: 8 convolution & pooling layers, 256 channels
|
| 173 |
+
nn.LazyConv2d(256, kernel_size=3, stride=1, padding=1),
|
| 174 |
+
nn.BatchNorm2d(256),
|
| 175 |
+
nn.ReLU(),
|
| 176 |
+
|
| 177 |
+
nn.LazyConv2d(256, kernel_size=3, stride=1, padding=1),
|
| 178 |
+
nn.BatchNorm2d(256),
|
| 179 |
+
nn.ReLU(),
|
| 180 |
+
|
| 181 |
+
nn.LazyConv2d(256, kernel_size=3, stride=1, padding=1),
|
| 182 |
+
nn.BatchNorm2d(256),
|
| 183 |
+
nn.ReLU(),
|
| 184 |
+
|
| 185 |
+
nn.LazyConv2d(256, kernel_size=3, stride=1, padding=1),
|
| 186 |
+
nn.BatchNorm2d(256),
|
| 187 |
+
nn.ReLU(),
|
| 188 |
+
|
| 189 |
+
nn.LazyConv2d(256, kernel_size=3, stride=1, padding=1),
|
| 190 |
+
nn.BatchNorm2d(256),
|
| 191 |
+
nn.ReLU(),
|
| 192 |
+
|
| 193 |
+
nn.LazyConv2d(256, kernel_size=3, stride=1, padding=1),
|
| 194 |
+
nn.BatchNorm2d(256),
|
| 195 |
+
nn.ReLU(),
|
| 196 |
+
|
| 197 |
+
nn.LazyConv2d(256, kernel_size=3, stride=1, padding=1),
|
| 198 |
+
nn.BatchNorm2d(256),
|
| 199 |
+
nn.ReLU(),
|
| 200 |
+
|
| 201 |
+
nn.LazyConv2d(256, kernel_size=3, stride=1, padding=1),
|
| 202 |
+
nn.BatchNorm2d(256),
|
| 203 |
+
nn.ReLU(),
|
| 204 |
+
|
| 205 |
+
nn.MaxPool2d(kernel_size=2), # from 28 to 14
|
| 206 |
+
nn.Dropout2d(0.3),
|
| 207 |
+
)
|
| 208 |
+
|
| 209 |
+
# Collapses 14 x 14 -> 1 x 1 regardless of input size
|
| 210 |
+
# https://discuss.pytorch.org/t/what-is-adaptiveavgpool2d/26897
|
| 211 |
+
# https://medium.com/@caring_smitten_gerbil_914/demystifying-nn-adaptiveavgpool2d-in-pytorch-why-adaptive-pooling-matters-in-deep-learning-1f7b7b1cc9b0
|
| 212 |
+
# https://docs.pytorch.org/docs/main/generated/torch.nn.modules.pooling.AdaptiveAvgPool2d.html
|
| 213 |
+
self.pool = nn.AdaptiveAvgPool2d(1)
|
| 214 |
+
|
| 215 |
+
# Fully Connected Layer head: wider than CNN9 to match 256 input channels
|
| 216 |
+
self.classifier = nn.Sequential(
|
| 217 |
+
nn.Flatten(),
|
| 218 |
+
nn.LazyLinear(1024),
|
| 219 |
+
nn.ReLU(),
|
| 220 |
+
nn.Dropout(0.5),
|
| 221 |
+
nn.LazyLinear(512),
|
| 222 |
+
nn.ReLU(),
|
| 223 |
+
nn.Dropout(0.5),
|
| 224 |
+
nn.LazyLinear(256),
|
| 225 |
+
nn.ReLU(),
|
| 226 |
+
nn.LazyLinear(num_classes), # no Dropout on output
|
| 227 |
+
)
|
| 228 |
+
|
| 229 |
+
def forward(self, x):
|
| 230 |
+
x = self.features(x)
|
| 231 |
+
x = self.pool(x)
|
| 232 |
+
return self.classifier(x)
|
| 233 |
+
|
| 234 |
+
|
| 235 |
+
|
| 236 |
+
|
| 237 |
+
class ResNet50Modified(nn.Module):
|
| 238 |
+
"""
|
| 239 |
+
https://pytorch.org/hub/nvidia_deeplearningexamples_resnet50/
|
| 240 |
+
https://docs.pytorch.org/vision/main/models/generated/torchvision.models.resnet50.html
|
| 241 |
+
https://medium.com/@deepvisionkararhaider/resnet-50-explained-step-by-step-the-easiest-guide-to-deep-residual-networks-7616f4f45046
|
| 242 |
+
https://arxiv.org/pdf/1512.03385
|
| 243 |
+
"""
|
| 244 |
+
@property
|
| 245 |
+
def has_backbone(): return True
|
| 246 |
+
|
| 247 |
+
def __init__(self, num_classes=8):
|
| 248 |
+
super().__init__()
|
| 249 |
+
self.backbone = torchvision.models.resnet50(weights="IMAGENET1K_V2", progress=True)
|
| 250 |
+
in_features = self.backbone.fc.in_features # 2048 the standard feature embedding vector size
|
| 251 |
+
|
| 252 |
+
# replace the original fc layer (a Linear(2048, 1000) trained on ImageNet's 1000 classes) with a passthrough.
|
| 253 |
+
# The backbone now outputs the raw 2048-dimensional feature vector instead of 1000 class logits.
|
| 254 |
+
self.backbone.fc = nn.Identity()
|
| 255 |
+
|
| 256 |
+
# Fully conncted layer head outside self.backbone -> stays trainable during phase 1 freeze
|
| 257 |
+
self.classifier = nn.Sequential(
|
| 258 |
+
nn.Dropout(p=0.4),
|
| 259 |
+
nn.Linear(in_features, num_classes),
|
| 260 |
+
)
|
| 261 |
+
|
| 262 |
+
def forward(self, x):
|
| 263 |
+
return self.classifier(self.backbone(x))
|
| 264 |
+
|
| 265 |
+
|
| 266 |
+
|
| 267 |
+
|
| 268 |
+
class ResNet18Modified(nn.Module):
|
| 269 |
+
"""
|
| 270 |
+
https://pytorch.org/hub/nvidia_deeplearningexamples_resnet50/
|
| 271 |
+
https://docs.pytorch.org/vision/main/models/generated/torchvision.models.resnet50.html
|
| 272 |
+
https://medium.com/@deepvisionkararhaider/resnet-50-explained-step-by-step-the-easiest-guide-to-deep-residual-networks-7616f4f45046
|
| 273 |
+
https://arxiv.org/pdf/1512.03385
|
| 274 |
+
"""
|
| 275 |
+
|
| 276 |
+
@property
|
| 277 |
+
def has_backbone(): return True
|
| 278 |
+
|
| 279 |
+
def __init__(self, num_classes=8):
|
| 280 |
+
super().__init__()
|
| 281 |
+
self.backbone = torchvision.models.resnet18(weights="IMAGENET1K_V1", progress=True)
|
| 282 |
+
in_features = self.backbone.fc.in_features # 2048 the standard feature embedding vector size
|
| 283 |
+
|
| 284 |
+
# replace the original fc layer (a Linear(2048, 1000) trained on ImageNet's 1000 classes) with a passthrough.
|
| 285 |
+
# The backbone now outputs the raw 2048-dimensional feature vector instead of 1000 class logits.
|
| 286 |
+
self.backbone.fc = nn.Identity()
|
| 287 |
+
|
| 288 |
+
# Fully conncted layer head outside self.backbone -> stays trainable during phase 1 freeze
|
| 289 |
+
self.classifier = nn.Sequential(
|
| 290 |
+
nn.Dropout(p=0.4),
|
| 291 |
+
nn.Linear(in_features, num_classes),
|
| 292 |
+
)
|
| 293 |
+
|
| 294 |
+
def forward(self, x):
|
| 295 |
+
return self.classifier(self.backbone(x))
|
| 296 |
+
|
| 297 |
+
|
| 298 |
+
|
| 299 |
+
class DenseNet201Modified(nn.Module):
|
| 300 |
+
"""
|
| 301 |
+
Densenet201: https://docs.pytorch.org/vision/main/models/generated/torchvision.models.densenet201.html#torchvision.models.densenet201
|
| 302 |
+
https://medium.com/@karuneshu21/implement-densenet-in-pytorch-46374ef91900
|
| 303 |
+
https://docs.pytorch.org/vision/main/models/densenet.html
|
| 304 |
+
Densely Connected Convolutional Networks: https://arxiv.org/abs/1608.06993
|
| 305 |
+
"""
|
| 306 |
+
|
| 307 |
+
@property
|
| 308 |
+
def has_backbone(): return True
|
| 309 |
+
|
| 310 |
+
def __init__(self, num_classes=8):
|
| 311 |
+
super().__init__()
|
| 312 |
+
self.backbone = torchvision.models.densenet201(
|
| 313 |
+
weights="IMAGENET1K_V1", progress=True)
|
| 314 |
+
in_features = self.backbone.classifier.in_features
|
| 315 |
+
self.backbone.classifier = nn.Identity()
|
| 316 |
+
self.classifier = nn.Sequential(
|
| 317 |
+
nn.Dropout(p=0.4),
|
| 318 |
+
nn.Linear(in_features, num_classes),
|
| 319 |
+
)
|
| 320 |
+
def forward(self, x):
|
| 321 |
+
return self.classifier(self.backbone(x))
|
| 322 |
+
|
| 323 |
+
|
| 324 |
+
|
| 325 |
+
|
| 326 |
+
class XceptionModified(nn.Module):
|
| 327 |
+
"""
|
| 328 |
+
|
| 329 |
+
https://huggingface.co/docs/timm/en/models/xception
|
| 330 |
+
You can finetune any of the pre-trained models just by changing the classifier (the last layer).
|
| 331 |
+
"""
|
| 332 |
+
|
| 333 |
+
@property
|
| 334 |
+
def has_backbone(): return True
|
| 335 |
+
|
| 336 |
+
def __init__(self, num_classes=8):
|
| 337 |
+
super().__init__()
|
| 338 |
+
self.backbone = timm.create_model(
|
| 339 |
+
"xception", pretrained=True, num_classes=0)
|
| 340 |
+
in_features = self.backbone.num_features
|
| 341 |
+
self.classifier = nn.Sequential(
|
| 342 |
+
nn.Dropout(p=0.4),
|
| 343 |
+
nn.Linear(in_features, num_classes),
|
| 344 |
+
)
|
| 345 |
+
def forward(self, x):
|
| 346 |
+
return self.classifier(self.backbone(x))
|
| 347 |
+
|
| 348 |
+
|
| 349 |
+
|
| 350 |
+
class InceptionV3Modified(nn.Module):
|
| 351 |
+
"""
|
| 352 |
+
Special case: requires 299Γ299 input
|
| 353 |
+
https://arxiv.org/abs/1512.00567
|
| 354 |
+
https://docs.pytorch.org/vision/main/models/generated/torchvision.models.inception_v3.html
|
| 355 |
+
"""
|
| 356 |
+
|
| 357 |
+
@property
|
| 358 |
+
def has_backbone(): return True
|
| 359 |
+
|
| 360 |
+
def __init__(self, num_classes=8):
|
| 361 |
+
super().__init__()
|
| 362 |
+
self.backbone = torchvision.models.inception_v3(
|
| 363 |
+
weights="IMAGENET1K_V1", progress=True,
|
| 364 |
+
aux_logits=True)
|
| 365 |
+
self.backbone.aux_logits = False # disable after loading -> forward returns plain tensor
|
| 366 |
+
self.backbone.AuxLogits = None # free the auxiliary classifier modules
|
| 367 |
+
|
| 368 |
+
in_features = self.backbone.fc.in_features # 2048 channels
|
| 369 |
+
self.backbone.fc = nn.Identity()
|
| 370 |
+
self.classifier = nn.Sequential(
|
| 371 |
+
nn.Dropout(p=0.4),
|
| 372 |
+
nn.Linear(in_features, num_classes),
|
| 373 |
+
)
|
| 374 |
+
def forward(self, x):
|
| 375 |
+
return self.classifier(self.backbone(x))
|
| 376 |
+
|
| 377 |
+
|
| 378 |
+
|
| 379 |
+
|
| 380 |
+
class AlexNetModified(nn.Module):
|
| 381 |
+
"""
|
| 382 |
+
AlexNet (Krizhevsky et al. 2012) - historical baseline:
|
| 383 |
+
https://www.researchgate.net/publication/319770183_Imagenet_classification_with_deep_convolutional_neural_networks.
|
| 384 |
+
https://proceedings.neurips.cc/paper_files/paper/2012/file/c399862d3b9d6b76c8436e924a68c45b-Paper.pdf
|
| 385 |
+
First deep CNN to win ImageNet. Shows progression from early architectures.
|
| 386 |
+
weights="IMAGENET1K_V1"
|
| 387 |
+
https://medium.com/@shivsingh483/understanding-alexnet-the-2012-breakthrough-that-changed-ai-forever-7c365cf76969
|
| 388 |
+
https://docs.pytorch.org/vision/main/models/generated/torchvision.models.alexnet.html
|
| 389 |
+
"""
|
| 390 |
+
@property
|
| 391 |
+
def has_backbone(): return True
|
| 392 |
+
|
| 393 |
+
def __init__(self, num_classes=8):
|
| 394 |
+
super().__init__()
|
| 395 |
+
backbone = torchvision.models.alexnet(weights="IMAGENET1K_V1")
|
| 396 |
+
|
| 397 |
+
# Remove the final linear classifier
|
| 398 |
+
self.backbone = nn.Sequential(backbone.features, backbone.avgpool, nn.Flatten(),
|
| 399 |
+
*list(backbone.classifier.children())[:-1]) # igore the last layer
|
| 400 |
+
in_features = 4096
|
| 401 |
+
|
| 402 |
+
self.classifier = nn.Sequential(
|
| 403 |
+
nn.Dropout(p=0.4),
|
| 404 |
+
nn.Linear(in_features, num_classes),
|
| 405 |
+
)
|
| 406 |
+
|
| 407 |
+
def forward(self, x):
|
| 408 |
+
return self.classifier(self.backbone(x))
|
| 409 |
+
|
| 410 |
+
|
| 411 |
+
|
| 412 |
+
|
| 413 |
+
class GoogLeNetModified(nn.Module):
|
| 414 |
+
"""
|
| 415 |
+
GoogLeNet
|
| 416 |
+
|
| 417 |
+
use weights="IMAGENET1K_V1" and aux_logits=False for simplicity.
|
| 418 |
+
https://www.researchgate.net/publication/316215961_KVASIR_A_Multi-Class_Image_Dataset_for_Computer_Aided_Gastrointestinal_Disease_Detection
|
| 419 |
+
https://doras.dcu.ie/21821/1/Pogorelov_et_al._2017.pdf
|
| 420 |
+
https://arxiv.org/pdf/1409.4842
|
| 421 |
+
https://pytorch.org/hub/pytorch_vision_googlenet/
|
| 422 |
+
https://pytorch.org/hub/pytorch_vision_googlenet/
|
| 423 |
+
https://www.google.com/url?sa=t&source=web&rct=j&opi=89978449&url=https://medium.com/%40siddheshb008/googlenet-a-deep-dive-into-googles-neural-network-technology-f588d1b49e55&ved=2ahUKEwjdirymi76UAxV0VEEAHR-aGQQQFnoECCUQAQ&usg=AOvVaw1Bij1bxrw7vGia5oJQhiZh
|
| 424 |
+
https://www.cs.unc.edu/~wliu/papers/GoogLeNet.pdf
|
| 425 |
+
|
| 426 |
+
# add final nn.Linear classifier layer
|
| 427 |
+
"""
|
| 428 |
+
|
| 429 |
+
@property
|
| 430 |
+
def has_backbone(): return True
|
| 431 |
+
|
| 432 |
+
def __init__(self, num_classes=8):
|
| 433 |
+
super().__init__()
|
| 434 |
+
self.backbone = torchvision.models.googlenet(
|
| 435 |
+
weights="IMAGENET1K_V1",
|
| 436 |
+
aux_logits=True, # required by torchvision when loading weights
|
| 437 |
+
)
|
| 438 |
+
self.backbone.aux_logits = False # disable after loading -> forward returns plain tensor
|
| 439 |
+
self.backbone.aux1 = None # free the auxiliary classifier modules
|
| 440 |
+
self.backbone.aux2 = None
|
| 441 |
+
self.backbone.AuxLogits = None
|
| 442 |
+
|
| 443 |
+
in_features = self.backbone.fc.in_features
|
| 444 |
+
self.backbone.fc = nn.Identity() # strip head from backbone
|
| 445 |
+
|
| 446 |
+
self.classifier = nn.Sequential(
|
| 447 |
+
nn.Dropout(0.4),
|
| 448 |
+
nn.Linear(in_features, num_classes),
|
| 449 |
+
)
|
| 450 |
+
|
| 451 |
+
def forward(self, x):
|
| 452 |
+
return self.classifier(self.backbone(x))
|
| 453 |
+
|
| 454 |
+
|
| 455 |
+
|
| 456 |
+
class VGG16Modified(nn.Module):
|
| 457 |
+
"""
|
| 458 |
+
VGG16 (Simonyan & Zisserman 2014).
|
| 459 |
+
https://arxiv.org/abs/1409.1556
|
| 460 |
+
https://arxiv.org/pdf/1409.1556
|
| 461 |
+
https://www.robots.ox.ac.uk/~vgg/research/very_deep/
|
| 462 |
+
|
| 463 |
+
You can finetune any of the pre-trained models just by changing the classifier (the last layer).
|
| 464 |
+
# num_classes=0 -> remove classifier nn.Linear
|
| 465 |
+
"""
|
| 466 |
+
|
| 467 |
+
@property
|
| 468 |
+
def has_backbone(): return True
|
| 469 |
+
|
| 470 |
+
def __init__(self, num_classes=8):
|
| 471 |
+
super().__init__()
|
| 472 |
+
self.backbone = torchvision.models.vgg16(weights="IMAGENET1K_V1")
|
| 473 |
+
|
| 474 |
+
# Remove last linear classifier
|
| 475 |
+
in_features = self.backbone.classifier[6].in_features # 4096
|
| 476 |
+
self.backbone.classifier[6] = nn.Identity() # strip original classifier head
|
| 477 |
+
|
| 478 |
+
|
| 479 |
+
self.classifier = nn.Sequential(
|
| 480 |
+
nn.Dropout(0.4),
|
| 481 |
+
nn.Linear(in_features, num_classes),
|
| 482 |
+
)
|
| 483 |
+
|
| 484 |
+
def forward(self, x):
|
| 485 |
+
return self.classifier(self.backbone(x))
|
| 486 |
+
|
| 487 |
+
|
| 488 |
+
|
| 489 |
+
|
| 490 |
+
class EfficientNetB0Modified(nn.Module):
|
| 491 |
+
"""
|
| 492 |
+
EfficientNet-B0 (Tan & Le 2019)
|
| 493 |
+
|
| 494 |
+
https://proceedings.mlr.press/v97/tan19a.html
|
| 495 |
+
https://arxiv.org/pdf/1905.11946
|
| 496 |
+
# num_classes=0 -> remove classifier nn.Linear
|
| 497 |
+
"""
|
| 498 |
+
|
| 499 |
+
@property
|
| 500 |
+
def has_backbone(): return True
|
| 501 |
+
|
| 502 |
+
def __init__(self, num_classes=8):
|
| 503 |
+
super().__init__()
|
| 504 |
+
self.backbone = timm.create_model("efficientnet_b0", pretrained=True, num_classes=0)
|
| 505 |
+
self.classifier = nn.Sequential(
|
| 506 |
+
nn.Dropout(0.4),
|
| 507 |
+
nn.Linear(self.backbone.num_features, num_classes),
|
| 508 |
+
)
|
| 509 |
+
|
| 510 |
+
def forward(self, x):
|
| 511 |
+
return self.classifier(self.backbone(x))
|
| 512 |
+
|
| 513 |
+
|
| 514 |
+
class SEBlock(nn.Module):
|
| 515 |
+
"""
|
| 516 |
+
Squeeze-and-Excitation block.
|
| 517 |
+
|
| 518 |
+
https://www.emergentmind.com/topics/squeeze-and-excitation-se-mechanism
|
| 519 |
+
https://www.digitalocean.com/community/tutorials/channel-attention-squeeze-and-excitation-networks
|
| 520 |
+
https://arxiv.org/pdf/1709.01507
|
| 521 |
+
|
| 522 |
+
Learns WHICH feature channels matter most for each endoscopic finding.
|
| 523 |
+
For Example: colour channels matter more for esophagitis, texture for polyps.
|
| 524 |
+
"""
|
| 525 |
+
def __init__(self, channels, reduction=16):
|
| 526 |
+
super().__init__()
|
| 527 |
+
self.pool = nn.AdaptiveAvgPool2d(1)
|
| 528 |
+
self.excite = nn.Sequential(
|
| 529 |
+
nn.Flatten(),
|
| 530 |
+
nn.Linear(channels, channels // reduction, bias=False),
|
| 531 |
+
nn.ReLU(),
|
| 532 |
+
nn.Linear(channels // reduction, channels, bias=False),
|
| 533 |
+
nn.Sigmoid(),
|
| 534 |
+
)
|
| 535 |
+
|
| 536 |
+
def forward(self, x):
|
| 537 |
+
s = self.excite(self.pool(x)).unsqueeze(-1).unsqueeze(-1)
|
| 538 |
+
return x * s
|
| 539 |
+
|
| 540 |
+
class EfficientNetB0_SE_Modified(nn.Module):
|
| 541 |
+
"""
|
| 542 |
+
EfficientNet-B0 with custom SE attention pooling.
|
| 543 |
+
|
| 544 |
+
Modification over baseline EfficientNet-B0:
|
| 545 |
+
- After the backbone's final feature maps, apply an SE block
|
| 546 |
+
that recalibrates channel importance before classification.
|
| 547 |
+
|
| 548 |
+
https://arxiv.org/pdf/1905.11946
|
| 549 |
+
https://medium.com/codex/a-summary-of-efficientnet-rethinking-model-scaling-for-cnns-d524d37ff8bb
|
| 550 |
+
|
| 551 |
+
# num_classes=0 -> remove classifier nn.Linear
|
| 552 |
+
"""
|
| 553 |
+
|
| 554 |
+
@property
|
| 555 |
+
def has_backbone(): return True
|
| 556 |
+
|
| 557 |
+
def __init__(self, num_classes=8, reduction=16):
|
| 558 |
+
super().__init__()
|
| 559 |
+
self.backbone = timm.create_model(
|
| 560 |
+
"efficientnet_b0",
|
| 561 |
+
pretrained=True,
|
| 562 |
+
num_classes=0,
|
| 563 |
+
global_pool=""
|
| 564 |
+
)
|
| 565 |
+
in_features = self.backbone.num_features # 1280
|
| 566 |
+
self.se_block = SEBlock(in_features, reduction=reduction)
|
| 567 |
+
self.pool = nn.AdaptiveAvgPool2d(1) # [B, 1280, H, W] -> [B, 1280, 1, 1]
|
| 568 |
+
|
| 569 |
+
self.classifier = nn.Sequential(
|
| 570 |
+
nn.Flatten(), # [B, 1280, 1, 1] -> [B, 1280]
|
| 571 |
+
nn.Dropout(0.4),
|
| 572 |
+
nn.Linear(in_features, num_classes),
|
| 573 |
+
)
|
| 574 |
+
|
| 575 |
+
def forward(self, x):
|
| 576 |
+
x = self.backbone(x) # [B, 1280, H, W]
|
| 577 |
+
x = self.se_block(x) # [B, 1280, H, W]
|
| 578 |
+
x = self.pool(x) # [B, 1280, 1, 1]
|
| 579 |
+
return self.classifier(x) # Flatten inside classifier -> [B, 8]
|
| 580 |
+
|
| 581 |
+
|
| 582 |
+
|
| 583 |
+
|
| 584 |
+
# must have __init__ and forward
|
| 585 |
+
class MaxVitTinyTfModified(nn.Module):
|
| 586 |
+
"""
|
| 587 |
+
https://huggingface.co/timm/maxvit_tiny_tf_224.in1k
|
| 588 |
+
You can finetune any of the pre-trained models just by changing the classifier (the last layer).
|
| 589 |
+
"""
|
| 590 |
+
|
| 591 |
+
@property
|
| 592 |
+
def has_backbone(): return True
|
| 593 |
+
|
| 594 |
+
def __init__(self, num_classes=8): # define different parts of the model
|
| 595 |
+
super().__init__()
|
| 596 |
+
self.backbone = timm.create_model(
|
| 597 |
+
"maxvit_tiny_tf_224", pretrained=True,
|
| 598 |
+
num_classes=0 # remove classifier nn.Linear
|
| 599 |
+
)
|
| 600 |
+
out_size = self.backbone.num_features
|
| 601 |
+
self.classifier = nn.Sequential(
|
| 602 |
+
nn.Dropout(p=0.4),
|
| 603 |
+
nn.Linear(out_size, num_classes)
|
| 604 |
+
)
|
| 605 |
+
|
| 606 |
+
# take example or batch of examples and connect the parts
|
| 607 |
+
# defind in init and return the output
|
| 608 |
+
def forward(self, x):
|
| 609 |
+
x = self.backbone(x) # returns pooled features, no head
|
| 610 |
+
return self.classifier(x)
|
| 611 |
+
|
| 612 |
+
|
| 613 |
+
|
| 614 |
+
|
| 615 |
+
from dataclasses import dataclass, field
|
| 616 |
+
import torch
|
| 617 |
+
|
| 618 |
+
@dataclass(frozen=True)
|
| 619 |
+
class EvaluationResult:
|
| 620 |
+
confusion_matrix: ConfusionMatrix
|
| 621 |
+
accuracy: float
|
| 622 |
+
precision: float
|
| 623 |
+
recall: float
|
| 624 |
+
f1_score: float
|
| 625 |
+
all_preds: list = field(default_factory=list)
|
| 626 |
+
all_labels: list = field(default_factory=list)
|
| 627 |
+
|
| 628 |
+
|
| 629 |
+
|
| 630 |
+
# Model List
|
| 631 |
+
MODEL_REGISTRY_ADAM = {
|
| 632 |
+
#"SimpleCNN_Adam": (SimpleCNN(NUM_CLASSES), False), # no base model
|
| 633 |
+
#"CNN3_Adam": (CNN3(NUM_CLASSES), False), # no base model
|
| 634 |
+
#"CNN6_Adam": (CNN6(NUM_CLASSES), False), # no base model
|
| 635 |
+
#"CNN9_Adam": (CNN9(NUM_CLASSES), False), # no base model
|
| 636 |
+
'CNN32_Adam': (CNN32(NUM_CLASSES), False),
|
| 637 |
+
"Resnet50_Adam": (ResNet50Modified(NUM_CLASSES), True), # My Method 1
|
| 638 |
+
"Resnet18_Adam": (ResNet18Modified(NUM_CLASSES), True),
|
| 639 |
+
#"AlexNet_Adam": (AlexNetModified(NUM_CLASSES), True),
|
| 640 |
+
#"GoogLeNet_Adam":(GoogLeNetModified(NUM_CLASSES), True),
|
| 641 |
+
#"VGG16_Adam": (VGG16Modified(NUM_CLASSES), True),
|
| 642 |
+
#"EfficientNet-B0_Adam": (EfficientNetB0Modified(NUM_CLASSES), True),
|
| 643 |
+
"EfficientNet-B0-SE_Adam":(EfficientNetB0_SE_Modified(NUM_CLASSES), True), # My Method 2
|
| 644 |
+
#"MaxVitTinyTf_Adam":(MaxVitTinyTfModified(NUM_CLASSES), True),
|
| 645 |
+
#'Xception_Adam': (XceptionModified(NUM_CLASSES), True),
|
| 646 |
+
}
|
| 647 |
+
|
| 648 |
+
special_models_adam = {
|
| 649 |
+
'InceptionV3_Adam': (InceptionV3Modified(NUM_CLASSES), True)
|
| 650 |
+
}
|
| 651 |
+
|
| 652 |
+
# Model List
|
| 653 |
+
MODEL_REGISTRY_SGD = {
|
| 654 |
+
#"SimpleCNN_SGD": (SimpleCNN(NUM_CLASSES), False), # no base model
|
| 655 |
+
#"CNN3_SGD": (CNN3(NUM_CLASSES), False), # no base model
|
| 656 |
+
#"CNN6_SGD": (CNN6(NUM_CLASSES), False), # no base model
|
| 657 |
+
#"CNN9_SGD": (CNN9(NUM_CLASSES), False), # no base model
|
| 658 |
+
'CNN32_SGD': (CNN32(NUM_CLASSES), False),
|
| 659 |
+
"Resnet50_SGD": (ResNet50Modified(NUM_CLASSES), True), # My Method 1
|
| 660 |
+
"Resnet18_SGD": (ResNet18Modified(NUM_CLASSES), True),
|
| 661 |
+
#"AlexNet_SGD": (AlexNetModified(NUM_CLASSES), True),
|
| 662 |
+
#"GoogLeNet_SGD":(GoogLeNetModified(NUM_CLASSES), True),
|
| 663 |
+
#"VGG16_SGD": (VGG16Modified(NUM_CLASSES), True),
|
| 664 |
+
#"EfficientNet-B0_SGD": (EfficientNetB0Modified(NUM_CLASSES), True),
|
| 665 |
+
"EfficientNet-B0-SE_SGD":(EfficientNetB0_SE_Modified(NUM_CLASSES), True), # My Method 2
|
| 666 |
+
#"MaxVitTinyTf_SGD":(MaxVitTinyTfModified(NUM_CLASSES), True),
|
| 667 |
+
#'Xception_SGD': (XceptionModified(NUM_CLASSES), True),
|
| 668 |
+
}
|
| 669 |
+
|
| 670 |
+
special_models_sgd = {
|
| 671 |
+
'InceptionV3_SGD': (InceptionV3Modified(NUM_CLASSES), True)
|
| 672 |
+
}
|
| 673 |
+
|
| 674 |
+
|
| 675 |
+
|
| 676 |
+
MODEL_REGISTRY_ADAM_W = {
|
| 677 |
+
#"SimpleCNN_AdamW": (SimpleCNN(NUM_CLASSES), False), # no base model
|
| 678 |
+
#"CNN3_AdamW": (CNN3(NUM_CLASSES), False), # no base model
|
| 679 |
+
#"CNN6_AdamW": (CNN6(NUM_CLASSES), False), # no base model
|
| 680 |
+
#"CNN9_AdamW": (CNN9(NUM_CLASSES), False), # no base model
|
| 681 |
+
'CNN32_AdamW': (CNN32(NUM_CLASSES), False),
|
| 682 |
+
"Resnet50_AdamW": (ResNet50Modified(NUM_CLASSES), True), # My Method 1
|
| 683 |
+
"Resnet18_AdamW": (ResNet18Modified(NUM_CLASSES), True),
|
| 684 |
+
#"AlexNet_AdamW": (AlexNetModified(NUM_CLASSES), True),
|
| 685 |
+
#"GoogLeNet_AdamW":(GoogLeNetModified(NUM_CLASSES), True),
|
| 686 |
+
#"VGG16_AdamW": (VGG16Modified(NUM_CLASSES), True),
|
| 687 |
+
#"EfficientNet-B0_AdamW": (EfficientNetB0Modified(NUM_CLASSES), True),
|
| 688 |
+
"EfficientNet-B0-SE_AdamW":(EfficientNetB0_SE_Modified(NUM_CLASSES), True), # My Method 2
|
| 689 |
+
#"MaxVitTinyTf_AdamW":(MaxVitTinyTfModified(NUM_CLASSES), True),
|
| 690 |
+
#'Xception_AdamW': (XceptionModified(NUM_CLASSES), True),
|
| 691 |
+
}
|
| 692 |
+
|
| 693 |
+
special_models_adam_w = {
|
| 694 |
+
'InceptionV3_AdamW': (InceptionV3Modified(NUM_CLASSES), True)
|
| 695 |
+
}
|
| 696 |
+
|
| 697 |
+
|
| 698 |
+
best_optimizer = 'AdamW'
|
| 699 |
+
|
| 700 |
+
|
| 701 |
+
|
| 702 |
+
LOADED_MODELS = {}
|
| 703 |
+
|
| 704 |
+
if best_optimizer == "SGD":
|
| 705 |
+
for model_name, (model, _) in {**MODEL_REGISTRY_SGD, **special_models_sgd}.items():
|
| 706 |
+
ckpt_path = f"best_{model_name.replace(' ','_')}.pth"
|
| 707 |
+
try:
|
| 708 |
+
model.load_state_dict(
|
| 709 |
+
torch.load(ckpt_path, map_location=DEVICE))
|
| 710 |
+
model.to(DEVICE)
|
| 711 |
+
model.eval()
|
| 712 |
+
LOADED_MODELS[model_name] = model
|
| 713 |
+
print(f" β Loaded: {model_name}")
|
| 714 |
+
except FileNotFoundError:
|
| 715 |
+
print(f"(<-->) Skipped: {model_name} β checkpoint not found ({ckpt_path})")
|
| 716 |
+
elif best_optimizer == "AdamW":
|
| 717 |
+
for model_name, (model, _) in {**MODEL_REGISTRY_ADAM_W, **special_models_adam_w}.items():
|
| 718 |
+
ckpt_path = f"best_{model_name.replace(' ','_')}.pth"
|
| 719 |
+
try:
|
| 720 |
+
model.load_state_dict(
|
| 721 |
+
torch.load(ckpt_path, map_location=DEVICE))
|
| 722 |
+
model.to(DEVICE)
|
| 723 |
+
model.eval()
|
| 724 |
+
LOADED_MODELS[model_name] = model
|
| 725 |
+
print(f" β Loaded: {model_name}")
|
| 726 |
+
except FileNotFoundError:
|
| 727 |
+
print(f"(<-->) Skipped: {model_name} β checkpoint not found ({ckpt_path})")
|
| 728 |
+
elif best_optimizer == "Adam":
|
| 729 |
+
for model_name, (model, _) in {**MODEL_REGISTRY_ADAM, **special_models_adam}.items():
|
| 730 |
+
ckpt_path = f"best_{model_name.replace(' ','_')}.pth"
|
| 731 |
+
try:
|
| 732 |
+
model.load_state_dict(
|
| 733 |
+
torch.load(ckpt_path, map_location=DEVICE))
|
| 734 |
+
model.to(DEVICE)
|
| 735 |
+
model.eval()
|
| 736 |
+
LOADED_MODELS[model_name] = model
|
| 737 |
+
print(f" β Loaded: {model_name}")
|
| 738 |
+
except FileNotFoundError:
|
| 739 |
+
print(f"(<-->) Skipped: {model_name} β checkpoint not found ({ckpt_path})")
|
| 740 |
+
|
| 741 |
+
print(f"\nAvailable models: {list(LOADED_MODELS.keys())}")
|
| 742 |
+
|
| 743 |
+
|
| 744 |
+
inference_transform = v2.Compose([
|
| 745 |
+
v2.Resize((224, 224)),
|
| 746 |
+
v2.ToImage(),
|
| 747 |
+
v2.ToDtype(torch.float32, scale=True),
|
| 748 |
+
v2.Normalize(mean=[0.485, 0.456, 0.406],
|
| 749 |
+
std=[0.229, 0.224, 0.225]),
|
| 750 |
+
])
|
| 751 |
+
|
| 752 |
+
|
| 753 |
+
inception_transform = v2.Compose([
|
| 754 |
+
v2.Resize((299, 299)),
|
| 755 |
+
v2.ToImage(),
|
| 756 |
+
v2.ToDtype(torch.float32, scale=True),
|
| 757 |
+
v2.Normalize(mean=[0.485, 0.456, 0.406],
|
| 758 |
+
std=[0.229, 0.224, 0.225]),
|
| 759 |
+
])
|
| 760 |
+
|
| 761 |
+
CLASS_NAMES = [
|
| 762 |
+
"dyed-lifted-polyps",
|
| 763 |
+
"dyed-resection-margins",
|
| 764 |
+
"esophagitis",
|
| 765 |
+
"normal-cecum",
|
| 766 |
+
"normal-pylorus",
|
| 767 |
+
"normal-z-line",
|
| 768 |
+
"polyps",
|
| 769 |
+
"ulcerative-colitis",
|
| 770 |
+
]
|
| 771 |
+
|
| 772 |
+
|
| 773 |
+
CLASS_EMOJIS = {
|
| 774 |
+
"dyed-lifted-polyps": "π£",
|
| 775 |
+
"dyed-resection-margins": "π΅",
|
| 776 |
+
"esophagitis": "π ",
|
| 777 |
+
"normal-cecum": "π’",
|
| 778 |
+
"normal-pylorus": "π¨",
|
| 779 |
+
"normal-z-line": "π¦",
|
| 780 |
+
"polyps": "π‘",
|
| 781 |
+
"ulcerative-colitis": "π΄",
|
| 782 |
+
}
|
| 783 |
+
|
| 784 |
+
|
| 785 |
+
# https://www.gradio.app/guides/the-interface-class
|
| 786 |
+
# fn: the function to wrap a user interface (UI) around
|
| 787 |
+
def predict(image, model_name: str):
|
| 788 |
+
"""
|
| 789 |
+
Takes a PIL image and model name.
|
| 790 |
+
Returns: prediction label, confidence bar chart figure, attention note.
|
| 791 |
+
"""
|
| 792 |
+
# Guard: Image is None
|
| 793 |
+
if image is None:
|
| 794 |
+
return "No image uploaded.", None
|
| 795 |
+
|
| 796 |
+
# Guad: if model_name is None
|
| 797 |
+
if model_name is None:
|
| 798 |
+
return "No model selected.", None
|
| 799 |
+
|
| 800 |
+
# Guard: Model not loaded
|
| 801 |
+
if model_name not in LOADED_MODELS:
|
| 802 |
+
return f"Model '{model_name}' not loaded. Available: {list(LOADED_MODELS.keys())}", None
|
| 803 |
+
|
| 804 |
+
model = LOADED_MODELS[model_name]
|
| 805 |
+
|
| 806 |
+
# Guard: In case model is stored as None
|
| 807 |
+
if model is None:
|
| 808 |
+
return f"Model '{model_name}' is None β checkpoint failed to load.", None
|
| 809 |
+
|
| 810 |
+
# Image Transformation
|
| 811 |
+
transform = (inception_transform
|
| 812 |
+
if "inception" in model_name.lower()
|
| 813 |
+
else inference_transform)
|
| 814 |
+
|
| 815 |
+
img_tensor = transform(image).unsqueeze(0).to(DEVICE) # [1, 3, H, W]
|
| 816 |
+
|
| 817 |
+
# Model Prediction Inference
|
| 818 |
+
model.eval()
|
| 819 |
+
with torch.no_grad():
|
| 820 |
+
logits = model(img_tensor)
|
| 821 |
+
probs = F.softmax(logits, dim=1).squeeze()
|
| 822 |
+
pred_idx = probs.argmax().item()
|
| 823 |
+
pred_class = CLASS_NAMES[pred_idx]
|
| 824 |
+
confidence = probs[pred_idx].item()
|
| 825 |
+
|
| 826 |
+
# Probability Bar Chart
|
| 827 |
+
probs_np = probs.cpu().numpy()
|
| 828 |
+
colours = ["#1D9E75" if i == pred_idx else "#B0BEC5"
|
| 829 |
+
for i in range(len(CLASS_NAMES))]
|
| 830 |
+
|
| 831 |
+
fig, ax = plt.subplots(figsize=(7, 3.5))
|
| 832 |
+
bars = ax.barh(CLASS_NAMES, probs_np, color=colours, edgecolor="white")
|
| 833 |
+
ax.set_xlim(0, 1)
|
| 834 |
+
ax.set_xlabel("Probability")
|
| 835 |
+
ax.set_title(f"{model_name} β class probabilities")
|
| 836 |
+
ax.spines[["top", "right"]].set_visible(False)
|
| 837 |
+
for bar, prob in zip(bars, probs_np):
|
| 838 |
+
if prob > 0.02:
|
| 839 |
+
ax.text(prob + 0.01, bar.get_y() + bar.get_height() / 2,
|
| 840 |
+
f"{prob:.1%}", va="center", fontsize=9)
|
| 841 |
+
plt.tight_layout()
|
| 842 |
+
|
| 843 |
+
# Class Label
|
| 844 |
+
emoji = CLASS_EMOJIS.get(pred_class, "")
|
| 845 |
+
label = (f"{emoji} Predicted: {pred_class.replace('-',' ').title()}\n"
|
| 846 |
+
f"Confidence: {confidence:.1%}\n"
|
| 847 |
+
f"Model: {model_name}")
|
| 848 |
+
|
| 849 |
+
return label, fig
|
| 850 |
+
|
| 851 |
+
|
| 852 |
+
print("LOADED_MODELS contents:")
|
| 853 |
+
for name, model in LOADED_MODELS.items():
|
| 854 |
+
print(f" {name}: {type(model).__name__ if model is not None else 'None'}")
|
| 855 |
+
|
| 856 |
+
example_paths = []
|
| 857 |
+
for class_name in CLASS_NAMES:
|
| 858 |
+
images = glob(f"gradio_examples/{class_name}.jpg")
|
| 859 |
+
if images:
|
| 860 |
+
dst = f"gradio_examples/{class_name}.jpg"
|
| 861 |
+
example_paths.append(dst)
|
| 862 |
+
|
| 863 |
+
|
| 864 |
+
with gr.Blocks(title="Kvasir GI Endoscopy Multi-Image Classifier") as demo:
|
| 865 |
+
|
| 866 |
+
gr.Markdown("""
|
| 867 |
+
# Kvasir Gastrointestinal Endoscopy Classifier
|
| 868 |
+
Upload an endoscopy image and select a model to classify it into one of
|
| 869 |
+
**8 GI tract categories**: esophagitis, polyps, ulcerative colitis,
|
| 870 |
+
dyed lifted polyps, dyed resection margins, normal cecum, pylorus, or z-line.
|
| 871 |
+
""")
|
| 872 |
+
|
| 873 |
+
with gr.Row():
|
| 874 |
+
with gr.Column(scale=1):
|
| 875 |
+
image_input = gr.Image(
|
| 876 |
+
type="pil", # PIL Image Format
|
| 877 |
+
label="Upload endoscopy image",
|
| 878 |
+
)
|
| 879 |
+
model_dropdown = gr.Dropdown(
|
| 880 |
+
choices=list(LOADED_MODELS.keys()),
|
| 881 |
+
value=list(LOADED_MODELS.keys())[0],
|
| 882 |
+
label="Select model",
|
| 883 |
+
)
|
| 884 |
+
predict_btn = gr.Button("Classify", variant="primary")
|
| 885 |
+
|
| 886 |
+
with gr.Column(scale=2):
|
| 887 |
+
label_output = gr.Textbox(
|
| 888 |
+
label="Prediction",
|
| 889 |
+
lines=3,
|
| 890 |
+
)
|
| 891 |
+
chart_output = gr.Plot(
|
| 892 |
+
label="Class probabilities",
|
| 893 |
+
)
|
| 894 |
+
|
| 895 |
+
# Example images for testing
|
| 896 |
+
gr.Examples(
|
| 897 |
+
examples=[[p, random.choice(list(LOADED_MODELS.keys()))] for p in example_paths],
|
| 898 |
+
inputs=[image_input, model_dropdown],
|
| 899 |
+
label="Example images",
|
| 900 |
+
)
|
| 901 |
+
|
| 902 |
+
# Wire button to predict function
|
| 903 |
+
predict_btn.click(
|
| 904 |
+
fn=predict,
|
| 905 |
+
inputs=[image_input, model_dropdown],
|
| 906 |
+
outputs=[label_output, chart_output],
|
| 907 |
+
)
|
| 908 |
+
|
| 909 |
+
# Also predict on image upload (no button press needed)
|
| 910 |
+
image_input.change(
|
| 911 |
+
fn=predict,
|
| 912 |
+
inputs=[image_input, model_dropdown],
|
| 913 |
+
outputs=[label_output, chart_output],
|
| 914 |
+
)
|
| 915 |
+
|
| 916 |
+
demo.launch(share=True, allowed_paths=["gradio_examples"]) # share=True -> public URL
|