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Commit History
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Merge upstream/main into gradio - bring in all core improvements
- Takes upstream/main (ronboger) as source of truth for core functionality - Keeps Gradio UI work from hf-space branch - Merged dependencies in environment.yml and requirements.txt - Added fair-esm for CLEAN embedding support Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>9895fb8
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data: add JCVI Syn3.0 test sequences with documentation
Include 149 unknown/generic genes from the JCVI Syn3.0 minimal genome for testing and reproducing paper Figure 2A results. Source: Hutchison et al., Science 2016 (DOI: 10.1126/science.aad6253) Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>b247581
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update website with better UI
e223904
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bunch of renaming and refactoring
30c3022
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edited dockerfiles
8b85ea6
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created dockerfile and dockerignore
dcb463f
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second attempt at fdr/fnr generating script
19e829b
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updated gitignore
d46eca1