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2478 2479 2480 2481 2482 2483 2484 2485 2486 2487 2488 2489 2490 2491 2492 2493 2494 2495 2496 2497 2498 2499 2500 2501 2502 2503 2504 2505 2506 2507 2508 2509 2510 2511 2512 2513 2514 2515 2516 2517 2518 2519 2520 2521 2522 2523 2524 2525 2526 2527 2528 2529 2530 2531 2532 2533 2534 2535 2536 2537 2538 2539 2540 2541 2542 2543 2544 2545 2546 2547 2548 2549 2550 2551 2552 2553 2554 2555 2556 2557 2558 2559 2560 2561 2562 2563 2564 2565 2566 2567 2568 2569 2570 2571 2572 2573 2574 | import streamlit as st
import sys
import os
from datetime import datetime
from PIL import Image
import json
import tempfile
import time
import re
import hashlib
import platform
# Add utils to path
utils_path = os.path.join(os.path.dirname(os.path.dirname(__file__)), 'utils')
if utils_path not in sys.path:
sys.path.append(utils_path)
# Import utilities with error handling and robust fallbacks
UPLOAD_IMPORT_ERROR = None
try:
from utils.ocr_utils import extract_data_from_image
from utils.parsing_utils import _parse_raw_text_to_structured_json
from utils.analysis_engine import validate_soil_data, validate_leaf_data
from utils.parameter_standardizer import parameter_standardizer
from utils.config_manager import get_ui_config
except Exception:
try:
from ocr_utils import extract_data_from_image, validate_soil_data, validate_leaf_data
from parsing_utils import _parse_raw_text_to_structured_json
from parameter_standardizer import parameter_standardizer
from config_manager import get_ui_config
except Exception as e:
UPLOAD_IMPORT_ERROR = str(e)
extract_data_from_image = None
_parse_raw_text_to_structured_json = None
validate_soil_data = None
validate_leaf_data = None
parameter_standardizer = None
def get_ui_config():
return None
# Import translations
try:
from utils.translations import t
except ImportError:
try:
from translations import t
except ImportError:
# Fallback translation function
def t(key, default=None):
return default or key
def get_machine_id():
"""Generate a persistent machine identifier that persists across sessions"""
if 'machine_id' not in st.session_state:
machine_id_file = os.path.join(os.path.expanduser('~'), '.cropdrive_ai_machine_id')
machine_id = None
# Try to read existing machine ID from file
try:
if os.path.exists(machine_id_file):
with open(machine_id_file, 'r') as f:
machine_id = f.read().strip()
if machine_id and len(machine_id) == 16:
# Valid existing ID
st.session_state.machine_id = machine_id
return machine_id
except Exception:
pass
# Generate new machine ID based on system information
machine_info = {
'platform': platform.platform(),
'system': platform.system(),
'processor': platform.processor(),
'node': platform.node(), # Network name
}
# Create a hash from machine info
machine_string = json.dumps(machine_info, sort_keys=True)
machine_id = hashlib.md5(machine_string.encode()).hexdigest()[:16] # 16 char ID
# Save to file for persistence
try:
with open(machine_id_file, 'w') as f:
f.write(machine_id)
except Exception:
# If file write fails, still use the generated ID
pass
# Store in session state
st.session_state.machine_id = machine_id
return st.session_state.machine_id
def show_upload_page():
"""Main upload page - focused only on file upload and preview"""
# Import translations
try:
from utils.translations import t
except ImportError:
from translations import t
if UPLOAD_IMPORT_ERROR:
st.error(f"Upload module failed to load required dependencies: {UPLOAD_IMPORT_ERROR}")
st.info("Please check Space build logs and requirements.txt, then restart the Space.")
return
# CRITICAL: Check upload limit BEFORE showing upload page
try:
from utils.cropdrive_integration import can_start_analysis, get_upload_limit_info
# Check if user can start analysis
if not can_start_analysis():
# Upload limit reached - show message and redirect to history
limit_info = get_upload_limit_info()
uploads_used = limit_info.get('uploads_used', 0)
uploads_limit = limit_info.get('uploads_limit', 0)
upload_limit_exceeded = limit_info.get('upload_limit_exceeded', False)
st.error("🚫 **Upload Limit Reached**")
if upload_limit_exceeded or (uploads_limit > 0 and uploads_used >= uploads_limit):
st.warning(f"⚠️ You have reached your upload limit: **{uploads_used}/{uploads_limit}** analyses used.")
st.info("💡 **What you can do:**")
st.markdown("""
- 📋 **View your past analyses** - Access your analysis history to review previous reports
- 🔄 **Upgrade your plan** - Contact support to increase your analysis limit
- 📊 **Review existing reports** - All your past analyses are still accessible
""")
# Show button to view history (if analysisId is available)
st.markdown("---")
col1, col2, col3 = st.columns([1, 2, 1])
with col2:
st.info("📋 **To view your analysis history, go to the CropDrive website and click 'Open Recent Analysis' on any report.**")
if st.button("🏠 Back to Home", width="stretch", type="primary"):
st.session_state.current_page = 'home'
st.rerun()
# Stop execution - don't show upload page
st.stop()
except ImportError:
# If cropdrive_integration is not available, allow upload (fallback)
pass
except Exception as e:
# Log error but allow upload (fallback)
import logging
logging.warning(f"Error checking upload limit: {e}")
st.markdown(f'<h1 style="color: #2E8B57; text-align: center; font-size: 3rem; font-weight: 700; margin: 1.5rem 0 1rem 0;">📤 {t("upload_title")}</h1>', unsafe_allow_html=True)
st.markdown(f"### {t('upload_desc')}")
# Main upload section
upload_section()
def display_structured_soil_data(soil_data: dict) -> None:
"""Display structured soil data in a clean, organized format"""
samples = soil_data.get('samples', [])
if not samples:
st.warning("No soil samples found in extracted data")
return
# Display sample count
st.success(f"✅ **{len(samples)} soil samples extracted successfully**")
# Create tabs for different views
tab1, tab2, tab3 = st.tabs(["📊 Structured Data", "🔍 Sample Details", "📋 Raw JSON"])
with tab1:
st.markdown("**📊 Soil Analysis Summary**")
# Create a summary table
if samples:
# Get all unique parameters from the data structure
all_params = set()
for sample in samples:
# Handle both flat and nested structures
if 'data' in sample:
all_params.update(sample['data'].keys())
all_params.update(sample.keys())
# Display parameter summary
st.info(f"**Parameters detected:** {', '.join(sorted(all_params))}")
# Display first few samples in a table format
display_samples = samples[:5] # Show first 5 samples
for i, sample in enumerate(display_samples, 1):
sample_id = sample.get('sample_id', sample.get('Lab No.', f'Sample {i}'))
with st.expander(f"🧪 Sample {i} - {sample_id}", expanded=i==1):
col1, col2 = st.columns(2)
# Get data from nested structure if it exists
sample_data = sample.get('data', {}) if 'data' in sample else sample
with col1:
st.markdown("**Basic Parameters:**")
# Map actual parameter names to display names
basic_mapping = {
'sample_id': 'Sample ID',
'Lab No.': 'Lab Number',
'pH': 'pH',
'Org. C (%)': 'Organic Carbon (%)',
'N (%)': 'Nitrogen (%)',
'Total N (%)': 'Total Nitrogen (%)'
}
# Show sample ID first
if 'sample_id' in sample:
st.write(f"• **Sample ID:** {sample['sample_id']}")
# Show other basic parameters
for param, display_name in basic_mapping.items():
if param in sample_data:
st.write(f"• **{display_name}:** {sample_data[param]}")
with col2:
st.markdown("**Nutrient Parameters:**")
# Use standardized parameter names from parameter_standardizer
nutrient_mapping = parameter_standardizer.get_display_name_mapping('soil')
# Filter to show only nutrient parameters (exclude pH, N, Org.C)
nutrient_params = {
'Total P (mg/kg)': 'Total P (mg/kg)',
'Avail P (mg/kg)': 'Available P (mg/kg)',
'Exch. K (meq%)': 'Exchangeable K (meq%)',
'Exch. Ca (meq%)': 'Exchangeable Ca (meq%)',
'Exch. Mg (meq%)': 'Exchangeable Mg (meq%)',
'CEC (meq%)': 'CEC (meq%)'
}
for param, display_name in nutrient_params.items():
if param in sample_data:
st.write(f"• **{display_name}:** {sample_data[param]}")
if len(samples) > 5:
st.info(f"Showing first 5 samples. Total samples: {len(samples)}")
with tab2:
st.markdown("**🔍 Detailed Sample Analysis**")
# Sample selector
sample_options = [f"Sample {i+1}: {sample.get('sample_id', sample.get('Lab No.', f'Sample {i+1}'))}"
for i, sample in enumerate(samples)]
selected_sample_idx = st.selectbox("Select sample to view:",
range(len(sample_options)),
format_func=lambda x: sample_options[x])
if selected_sample_idx is not None:
selected_sample = samples[selected_sample_idx]
sample_data = selected_sample.get('data', {}) if 'data' in selected_sample else selected_sample
st.markdown(f"**Sample Details: {sample_options[selected_sample_idx]}**")
# Group parameters by category with actual parameter names
categories = {
'Basic Info': {
'sample_id': 'Sample ID',
'Lab No.': 'Lab Number'
},
'Soil Chemistry': {
'pH': 'pH',
'Org. C (%)': 'Organic Carbon (%)',
'N (%)': 'Nitrogen (%)',
'Total N (%)': 'Total Nitrogen (%)'
},
'Phosphorus': {
'Avail P (mg/kg)': 'Available P (mg/kg)',
'Total P (mg/kg)': 'Total P (mg/kg)'
},
'Exchangeable Cations': {
'Exch. K (meq%)': 'Exchangeable K (meq%)',
'Exch. Ca (meq%)': 'Exchangeable Ca (meq%)',
'Exch. Mg (meq%)': 'Exchangeable Mg (meq%)'
},
'Other': {
'CEC (meq%)': 'CEC (meq%)'
}
}
for category, param_mapping in categories.items():
category_data = {}
# Check both sample and sample_data for parameters
for param, display_name in param_mapping.items():
if param in selected_sample:
category_data[display_name] = selected_sample[param]
elif param in sample_data:
category_data[display_name] = sample_data[param]
if category_data:
st.markdown(f"**{category}:**")
for display_name, value in category_data.items():
st.write(f" • {display_name}: {value}")
st.write("")
with tab3:
st.markdown("**📋 Complete Soil Data (JSON)**")
st.code(json.dumps(soil_data, indent=2, ensure_ascii=False), language='json')
def display_structured_leaf_data(leaf_data: dict) -> None:
"""Display structured leaf data in a clean, organized format"""
samples = leaf_data.get('samples', [])
if not samples:
st.warning("No leaf samples found in extracted data")
return
# Display sample count
st.success(f"✅ **{len(samples)} leaf samples extracted successfully**")
# Create tabs for different views
tab1, tab2, tab3 = st.tabs(["📊 Structured Data", "🔍 Sample Details", "📋 Raw JSON"])
with tab1:
st.markdown("**📊 Leaf Analysis Summary**")
if samples:
# Display first few samples in organized format
display_samples = samples[:5] # Show first 5 samples
for i, sample in enumerate(display_samples, 1):
sample_id = sample.get('sample_id', sample.get('Lab No.', f'Sample {i}'))
with st.expander(f"🍃 Sample {i} - {sample_id}", expanded=i==1):
col1, col2 = st.columns(2)
with col1:
st.markdown("**% Dry Matter Content:**")
dry_matter = sample.get('% Dry Matter', {})
for nutrient, value in dry_matter.items():
st.write(f"• **{nutrient}:** {value}%")
# Basic info
basic_info = {k: v for k, v in sample.items()
if k not in ['% Dry Matter', 'mg/kg Dry Matter']}
if basic_info:
st.markdown("**Sample Info:**")
for key, value in basic_info.items():
st.write(f"• **{key}:** {value}")
with col2:
st.markdown("**mg/kg Dry Matter Content:**")
mg_kg = sample.get('mg/kg Dry Matter', {})
for nutrient, value in mg_kg.items():
st.write(f"• **{nutrient}:** {value} mg/kg")
if len(samples) > 5:
st.info(f"Showing first 5 samples. Total samples: {len(samples)}")
with tab2:
st.markdown("**🔍 Detailed Sample Analysis**")
# Sample selector
sample_options = [f"Sample {i+1}: {sample.get('sample_id', sample.get('Lab No.', f'Sample {i+1}'))}"
for i, sample in enumerate(samples)]
selected_sample_idx = st.selectbox("Select sample to view:",
range(len(sample_options)),
format_func=lambda x: sample_options[x])
if selected_sample_idx is not None:
selected_sample = samples[selected_sample_idx]
st.markdown(f"**Sample Details: {sample_options[selected_sample_idx]}**")
# Display organized data
col1, col2, col3 = st.columns(3)
with col1:
st.markdown("**Major Nutrients (% Dry Matter):**")
dry_matter = selected_sample.get('% Dry Matter', {})
for nutrient in ['N', 'P', 'K', 'Mg', 'Ca']:
if nutrient in dry_matter:
st.write(f"• **{nutrient}:** {dry_matter[nutrient]}%")
with col2:
st.markdown("**Micronutrients (mg/kg):**")
mg_kg = selected_sample.get('mg/kg Dry Matter', {})
for nutrient in ['B', 'Cu', 'Zn', 'Fe', 'Mn']:
if nutrient in mg_kg:
st.write(f"• **{nutrient}:** {mg_kg[nutrient]} mg/kg")
with col3:
st.markdown("**Sample Information:**")
basic_info = {k: v for k, v in selected_sample.items()
if k not in ['% Dry Matter', 'mg/kg Dry Matter']}
for key, value in basic_info.items():
st.write(f"• **{key}:** {value}")
with tab3:
st.markdown("**📋 Complete Leaf Data (JSON)**")
st.code(json.dumps(leaf_data, indent=2, ensure_ascii=False), language='json')
def show_ocr_preview(file, file_type: str, container_type: str) -> None:
"""Enhanced OCR preview with step-by-step processing display"""
# Header section (removed expander to avoid nesting issues)
st.markdown(f"### 🔍 {t('upload_ocr_preview', 'OCR Data Processing & Preview')}")
# Processing status indicators
status_container = st.container()
# Add refresh button and timestamp
col_refresh, col_timestamp = st.columns([1, 3])
with col_refresh:
refresh_ocr = st.button("🔄 Refresh OCR",
key=f"refresh_{container_type}_ocr",
help="Re-process the image with OCR")
with col_timestamp:
st.caption(f"{t('upload_last_processed', 'Last processed')}: {datetime.now().strftime('%H:%M:%S')}")
# Perform OCR processing quietly without step indicators
try:
# Create temporary file
file_ext = os.path.splitext(file.name)[1].lower()
is_image = file_ext in ['.png', '.jpg', '.jpeg']
with tempfile.NamedTemporaryFile(delete=False, suffix=file_ext) as tmp_file:
if is_image:
image = Image.open(file)
image.save(tmp_file.name)
else:
tmp_file.write(file.getvalue())
tmp_file_path = tmp_file.name
# Perform OCR extraction
ocr_result = extract_data_from_image(tmp_file_path)
# Clean up temporary file
try:
time.sleep(0.1)
os.unlink(tmp_file_path)
except (PermissionError, FileNotFoundError):
pass
success = ocr_result.get('success', False)
if success:
tables = ocr_result.get('tables', [])
if tables:
detected_type = tables[0].get('type', 'unknown')
# Check content type match
if detected_type.lower() == container_type.lower():
samples = tables[0].get('samples', [])
# Check if samples are empty objects
samples_are_empty = samples and all(isinstance(s, dict) and not s for s in samples)
# Store raw text in session state for fallback analysis
raw_text = ocr_result.get('raw_data', {}).get('text', '')
if container_type == 'soil':
st.session_state.raw_soil_text = raw_text
else:
st.session_state.raw_leaf_text = raw_text
st.info("🔄 Processing data through OCR text analysis for consistent results...")
# For Excel files, we need to generate raw text from the extracted samples
# to ensure same processing as images/PDFs
file_ext = os.path.splitext(file.name)[1].lower()
if file_ext in ['.xlsx', '.xls']:
if samples and not samples_are_empty:
# Generate raw text from samples for Excel files to match OCR processing
# Format: "S001: pH: 5.26 N (%): 0.07 Org. C (%): 0.58 ..."
raw_text_lines = []
for i, sample in enumerate(samples, 1):
sample_id = sample.get('sample_id', sample.get('Sample No.', sample.get('Lab No.', f'S{i:03d}')))
# Ensure sample_id is a string
sample_id = str(sample_id) if sample_id is not None else f'S{i:03d}'
# For leaf data, use 'L' prefix instead of 'S'
if container_type == 'leaf':
# Remove 'L' or 'P' prefix if it exists and ensure 3-digit format
if sample_id.startswith(('L', 'P')) and sample_id[1:].isdigit():
sample_num = int(sample_id[1:])
sample_id = f'L{sample_num:03d}'
elif sample_id.isdigit():
sample_id = f'L{int(sample_id):03d}'
else:
sample_id = f'L{i:03d}'
else:
# For soil data, use 'S' prefix
if sample_id.startswith('S') and sample_id[1:].isdigit():
sample_num = int(sample_id[1:])
sample_id = f'S{sample_num:03d}'
elif sample_id.isdigit():
sample_id = f'S{int(sample_id):03d}'
else:
sample_id = f'S{i:03d}'
param_values = []
for key, value in sample.items():
if key not in ['sample_id', 'Sample No.', 'Lab No.'] and value is not None:
# Format value as string
if isinstance(value, (int, float)):
param_values.append(str(value))
else:
param_values.append(str(value))
if param_values:
# Join all parameter values with spaces to match OCR format
values_text = ' '.join(param_values)
raw_text_lines.append(f"{sample_id}: {values_text}")
if raw_text_lines:
raw_text = "\n".join(raw_text_lines)
# Update session state with generated raw text
if container_type == 'soil':
st.session_state.raw_soil_text = raw_text
else:
st.session_state.raw_leaf_text = raw_text
else:
st.warning(f"No parameter data found in {container_type} Excel file samples")
else:
st.warning(f"No valid samples found in {container_type} Excel file (samples: {len(samples) if samples else 0}, empty: {samples_are_empty if 'samples_are_empty' in locals() else 'unknown'})")
# Fallback to raw text parsing (same path as images/PDFs)
if not raw_text and ocr_result.get('text'):
raw_text = ocr_result['text']
if raw_text:
# Store raw text in session state for analysis
if container_type == 'soil':
st.session_state.raw_soil_text = raw_text
else:
st.session_state.raw_leaf_text = raw_text
# For Excel files with successfully extracted samples, use them directly
# instead of re-parsing to preserve all samples
if file_ext in ['.xlsx', '.xls'] and samples and not samples_are_empty:
# Convert extracted samples to structured format directly
structured_data = {}
samples_data = {}
for sample in samples:
sid, sample_data = _flatten_ocr_sample(sample, container_type)
if not sid or not sample_data:
continue
sample_id = sid
# Preserve SP Lab IDs (S218/25, P220/25); normalize farm IDs only
if container_type == 'leaf':
if re.match(r'^P\d{1,4}/\d{2}$', sample_id, re.I):
sample_id = sample_id[0].upper() + sample_id[1:]
elif sample_id.startswith(('L', 'P')) and sample_id[1:].isdigit():
sample_id = f'L{int(sample_id[1:]):03d}'
elif sample_id.isdigit():
sample_id = f'L{int(sample_id):03d}'
else:
if re.match(r'^S\d{1,4}/\d{2}$', sample_id, re.I):
sample_id = sample_id[0].upper() + sample_id[1:]
elif sample_id.startswith('S') and sample_id[1:].isdigit():
sample_id = f'S{int(sample_id[1:]):03d}'
elif sample_id.isdigit():
sample_id = f'S{int(sample_id):03d}'
samples_data[sample_id] = sample_data
# Determine container key (SP Lab if any ID has / or SP/LAB markers)
if container_type == 'soil':
if any('/' in str(sid) or 'SP' in str(sid).upper() or 'LAB' in str(sid).upper() for sid in samples_data.keys()):
container_key = "SP_Lab_Test_Report"
else:
container_key = "Farm_Soil_Test_Data"
else:
if any(('/' in str(sid) and str(sid).upper().startswith('P')) for sid in samples_data.keys()):
container_key = "SP_Lab_Test_Report"
else:
container_key = "Farm_Leaf_Test_Data"
structured_data[container_key] = samples_data
# Display structured data directly
st.markdown(f"### 📝 {t('upload_raw_text', 'Raw Extracted Text Data')}")
st.markdown(f"#### 📊 {t('upload_structured_data', 'Structured OCR Data (JSON Format)')}")
st.markdown(f"**✅ {t('upload_extracted_samples', 'Extracted {} samples directly from {} file').format(len(samples_data), container_type)}**")
try:
import json
formatted_json = json.dumps(structured_data, indent=2, ensure_ascii=False)
st.code(formatted_json, language="json")
except Exception as e:
st.json(structured_data)
# Store structured data in session state
if container_type == 'soil':
st.session_state.structured_soil_data = structured_data
else:
st.session_state.structured_leaf_data = structured_data
st.info("💡 **AI Analysis Ready**: The structured data above will be used for comprehensive step-by-step analysis.")
# Show raw text for reference
st.markdown("#### 🔍 Raw OCR Text (Reference Only)")
st.code(raw_text, language="text")
st.caption(f"Raw text length: {len(raw_text)} characters | Container: {container_type}")
else:
# For images/PDFs or when Excel extraction failed, use raw text parsing
_show_raw_text_as_json(raw_text, container_type, ocr_result)
else:
st.error("No data could be extracted from the uploaded file")
else:
st.error(f"**Content Type Mismatch Detected!**")
st.warning(f"🔍 **Detected:** {detected_type.title()} analysis report")
st.warning(f"📁 **Expected:** {container_type.title()} analysis report")
# Try to fall back to raw text parsing even for type mismatch
raw_text = ocr_result.get('raw_data', {}).get('text', '')
if not raw_text and ocr_result.get('text'):
raw_text = ocr_result['text']
# For Excel files with type mismatch, generate raw text from samples
file_ext = os.path.splitext(file.name)[1].lower()
if (file_ext in ['.xlsx', '.xls'] and 'samples' in locals() and samples and
'samples_are_empty' in locals() and not samples_are_empty and not raw_text):
raw_text_lines = []
for i, sample in enumerate(samples, 1):
sample_id = sample.get('sample_id', sample.get('Sample No.', sample.get('Lab No.', f'S{i:03d}')))
# Ensure sample_id is a string
sample_id = str(sample_id) if sample_id is not None else f'S{i:03d}'
# For leaf data, use 'L' prefix instead of 'S'
if container_type == 'leaf':
# Remove 'L' or 'P' prefix if it exists and ensure 3-digit format
if sample_id.startswith(('L', 'P')) and sample_id[1:].isdigit():
sample_num = int(sample_id[1:])
sample_id = f'L{sample_num:03d}'
elif sample_id.isdigit():
sample_id = f'L{int(sample_id):03d}'
else:
sample_id = f'L{i:03d}'
else:
# For soil data, use 'S' prefix
if sample_id.startswith('S') and sample_id[1:].isdigit():
sample_num = int(sample_id[1:])
sample_id = f'S{sample_num:03d}'
elif sample_id.isdigit():
sample_id = f'S{int(sample_id):03d}'
else:
sample_id = f'S{i:03d}'
param_values = []
for key, value in sample.items():
if key not in ['sample_id', 'Sample No.', 'Lab No.'] and value is not None:
# Format value as string
if isinstance(value, (int, float)):
param_values.append(str(value))
else:
param_values.append(str(value))
if param_values:
# Join all parameter values with spaces to match OCR format
values_text = ' '.join(param_values)
raw_text_lines.append(f"{sample_id}: {values_text}")
if raw_text_lines:
raw_text = "\n".join(raw_text_lines)
if raw_text:
# Store raw text in session state for fallback analysis
if container_type == 'soil':
st.session_state.raw_soil_text = raw_text
else:
st.session_state.raw_leaf_text = raw_text
st.info("🔄 **Attempting raw text parsing despite type mismatch...**")
_show_raw_text_as_json(raw_text, container_type, ocr_result)
else:
if container_type.lower() == 'soil':
st.info("💡 **Please upload a soil analysis report in this container.**")
st.info("🍃 **For leaf analysis, use the Leaf Analysis container on the right.**")
else:
st.info("💡 **Please upload a leaf analysis report in this container.**")
st.info("🌱 **For soil analysis, use the Soil Analysis container on the left.**")
else:
# Try to get raw text for fallback processing
raw_text = ocr_result.get('raw_data', {}).get('text', '')
if not raw_text and ocr_result.get('text'):
raw_text = ocr_result['text']
if raw_text:
# Store raw text in session state for fallback analysis
if container_type == 'soil':
st.session_state.raw_soil_text = raw_text
else:
st.session_state.raw_leaf_text = raw_text
_show_raw_text_as_json(raw_text, container_type, ocr_result)
else:
st.error("No data could be extracted from the uploaded file")
except Exception as e:
# Provide better error messages
if 'ocr_result' in locals() and ocr_result:
error_msg = ocr_result.get('error', str(e)) if ocr_result.get('error') else str(e)
else:
error_msg = str(e)
# Add context about what went wrong
if not error_msg or error_msg == 'None':
error_msg = f"Processing failed for {file_ext.upper()} file. Check file format and try again."
st.error(f"**OCR Error:** {error_msg}")
# Show error details (using markdown instead of expander to avoid nesting)
st.markdown("**❌ Error Details:**")
st.code(f"Exception: {str(e)}\nError Message: {error_msg}\nFile: {file.name}\nContainer: {container_type}", language="text")
def upload_section():
"""Handle file upload and preview with enhanced OCR processing"""
# Get UI configuration
ui_config = get_ui_config()
# Import translations
try:
from utils.translations import t
except ImportError:
from translations import t
st.markdown(f"### 📁 {t('upload_section_title')}")
st.info(f"💡 **{t('upload_tip')}**")
# Create separate containers for soil and leaf analysis
col1, col2 = st.columns(2)
# Initialize session state for uploaded files
if 'soil_file' not in st.session_state:
st.session_state.soil_file = None
if 'leaf_file' not in st.session_state:
st.session_state.leaf_file = None
if 'land_yield_data' not in st.session_state:
st.session_state.land_yield_data = {
'land_size': 0,
'land_unit': 'hectares',
'current_yield': 0,
'yield_unit': 'tonnes/hectare',
'palm_density': 148,
'palm_age': 0,
'soil_type': ''
}
# Load saved land & yield data from Firestore using machine ID
try:
from utils.firebase_config import get_firestore_client
db = get_firestore_client()
if db:
machine_id = get_machine_id()
# Use a separate collection for land/yield data
land_yield_ref = db.collection('land_yield_data').document(machine_id)
land_yield_doc = land_yield_ref.get()
if land_yield_doc.exists:
saved_data = land_yield_doc.to_dict()
if (st.session_state.land_yield_data['land_size'] == 0 and
st.session_state.land_yield_data['current_yield'] == 0):
st.session_state.land_yield_data.update({
'land_size': saved_data.get('land_size', 0),
'land_unit': saved_data.get('land_unit', 'hectares'),
'current_yield': saved_data.get('current_yield', 0),
'yield_unit': saved_data.get('yield_unit', 'tonnes/hectare'),
'palm_density': saved_data.get('palm_density', 148),
'palm_age': saved_data.get('palm_age', 0),
'soil_type': saved_data.get('soil_type', '')
})
except Exception:
pass
with col1:
with st.container():
st.markdown(f"#### 🌱 {t('upload_soil_title')}")
st.markdown(t('upload_soil_desc'))
st.info(f"📋 **{t('upload_soil_expected')}**")
soil_file = st.file_uploader(
t('upload_soil_file'),
type=['png', 'jpg', 'jpeg', 'pdf', 'csv', 'xlsx', 'xls'],
help=t('upload_soil_help'),
key="soil_uploader"
)
# Handle file upload - persist in session state
if soil_file is not None:
# Store file in session state and also store file data for persistence
st.session_state.soil_file = soil_file
# Store file bytes for persistence across reruns (Streamlit Cloud compatibility)
try:
st.session_state.soil_file_data = soil_file.getvalue()
st.session_state.soil_file_name = soil_file.name
st.session_state.soil_file_type = soil_file.type
except Exception as e:
st.warning(f"Could not cache soil file data: {e}")
st.markdown("##### 📄 Uploaded Soil Report")
file_ext = os.path.splitext(soil_file.name)[1].lower()
is_image = file_ext in ['.png', '.jpg', '.jpeg']
if is_image:
try:
soil_image = Image.open(soil_file)
st.image(soil_image, caption="Soil Analysis Report", width="stretch")
st.info(f"**File:** {soil_file.name} | **Size:** {soil_file.size:,} bytes | **Format:** {soil_image.format}")
except Exception as e:
st.error(f"Error displaying soil image: {e}")
st.info(f"**File:** {soil_file.name} | **Size:** {soil_file.size:,} bytes")
else:
st.info(f"**File:** {soil_file.name} | **Size:** {soil_file.size:,} bytes | **Type:** {file_ext}")
# Enhanced OCR preview
show_ocr_preview(soil_file, file_ext, 'soil')
elif st.session_state.get('soil_file') is not None:
# File exists in session state but uploader shows None (after rerun)
# Reconstruct file object from cached data if available
if 'soil_file_data' in st.session_state and 'soil_file_name' in st.session_state:
try:
from io import BytesIO
# Recreate file-like object from cached data
cached_file = BytesIO(st.session_state.soil_file_data)
cached_file.name = st.session_state.soil_file_name
cached_file.type = st.session_state.get('soil_file_type', 'application/octet-stream')
st.session_state.soil_file = cached_file
st.markdown("##### 📄 Uploaded Soil Report (Restored)")
file_ext = os.path.splitext(st.session_state.soil_file_name)[1].lower()
is_image = file_ext in ['.png', '.jpg', '.jpeg']
if is_image:
try:
soil_image = Image.open(cached_file)
st.image(soil_image, caption="Soil Analysis Report", width="stretch")
st.info(f"**File:** {st.session_state.soil_file_name} | **Size:** {len(st.session_state.soil_file_data):,} bytes")
except Exception as e:
st.info(f"**File:** {st.session_state.soil_file_name} | **Size:** {len(st.session_state.soil_file_data):,} bytes")
else:
st.info(f"**File:** {st.session_state.soil_file_name} | **Size:** {len(st.session_state.soil_file_data):,} bytes | **Type:** {file_ext}")
except Exception as e:
st.warning(f"Could not restore soil file: {e}")
# Clear invalid cached data
st.session_state.soil_file = None
else:
# Show that file was previously uploaded
st.info("✅ Soil file previously uploaded")
with col2:
with st.container():
st.markdown(f"#### 🍃 {t('upload_leaf_title')}")
st.markdown(t('upload_leaf_desc'))
st.info(f"📋 **{t('upload_expected', 'Expected')}:** {t('upload_leaf_expected', 'Leaf analysis with N%, P%, K%, Mg%, Ca%, B, Cu, Zn content, etc.')}")
leaf_file = st.file_uploader(
t('upload_leaf_file'),
type=['png', 'jpg', 'jpeg', 'pdf', 'csv', 'xlsx', 'xls'],
help=t('upload_leaf_help'),
key="leaf_uploader"
)
# Handle file upload - persist in session state
if leaf_file is not None:
# Store file in session state and also store file data for persistence
st.session_state.leaf_file = leaf_file
# Store file bytes for persistence across reruns (Streamlit Cloud compatibility)
try:
st.session_state.leaf_file_data = leaf_file.getvalue()
st.session_state.leaf_file_name = leaf_file.name
st.session_state.leaf_file_type = leaf_file.type
except Exception as e:
st.warning(f"Could not cache leaf file data: {e}")
st.markdown("##### 📄 Uploaded Leaf Report")
leaf_ext = os.path.splitext(leaf_file.name)[1].lower()
leaf_is_image = leaf_ext in ['.png', '.jpg', '.jpeg']
if leaf_is_image:
try:
leaf_image = Image.open(leaf_file)
st.image(leaf_image, caption="Leaf Analysis Report", width="stretch")
st.info(f"**File:** {leaf_file.name} | **Size:** {leaf_file.size:,} bytes | **Format:** {leaf_image.format}")
except Exception as e:
st.error(f"Error displaying leaf image: {e}")
st.info(f"**File:** {leaf_file.name} | **Size:** {leaf_file.size:,} bytes")
else:
st.info(f"**File:** {leaf_file.name} | **Size:** {leaf_file.size:,} bytes | **Type:** {leaf_ext}")
# Enhanced OCR preview
show_ocr_preview(leaf_file, leaf_ext, 'leaf')
elif st.session_state.get('leaf_file') is not None:
# File exists in session state but uploader shows None (after rerun)
# Reconstruct file object from cached data if available
if 'leaf_file_data' in st.session_state and 'leaf_file_name' in st.session_state:
try:
from io import BytesIO
# Recreate file-like object from cached data
cached_file = BytesIO(st.session_state.leaf_file_data)
cached_file.name = st.session_state.leaf_file_name
cached_file.type = st.session_state.get('leaf_file_type', 'application/octet-stream')
st.session_state.leaf_file = cached_file
st.markdown("##### 📄 Uploaded Leaf Report (Restored)")
leaf_ext = os.path.splitext(st.session_state.leaf_file_name)[1].lower()
leaf_is_image = leaf_ext in ['.png', '.jpg', '.jpeg']
if leaf_is_image:
try:
leaf_image = Image.open(cached_file)
st.image(leaf_image, caption="Leaf Analysis Report", width="stretch")
st.info(f"**File:** {st.session_state.leaf_file_name} | **Size:** {len(st.session_state.leaf_file_data):,} bytes")
except Exception as e:
st.info(f"**File:** {st.session_state.leaf_file_name} | **Size:** {len(st.session_state.leaf_file_data):,} bytes")
else:
st.info(f"**File:** {st.session_state.leaf_file_name} | **Size:** {len(st.session_state.leaf_file_data):,} bytes | **Type:** {leaf_ext}")
except Exception as e:
st.warning(f"Could not restore leaf file: {e}")
# Clear invalid cached data
st.session_state.leaf_file = None
else:
# Show that file was previously uploaded
st.info("✅ Leaf file previously uploaded")
# Land/Yield Size Data Section
st.markdown("---")
st.markdown(f"### 🌾 {t('upload_land_yield_info', 'Land & Yield Information (Required)')}")
st.markdown(f"*{t('upload_land_yield_desc', 'Essential for generating accurate economic forecasts and 5-year yield projections')}*")
col1, col2, col3, col4 = st.columns(4)
with col1:
st.markdown(f"#### 📏 {t('upload_land_size', 'Land Size')}")
land_size = st.number_input(
t('upload_land_size', 'Land Size'),
min_value=0,
max_value=10000,
value=st.session_state.land_yield_data['land_size'],
step=1,
help=t('upload_land_size_help', 'Enter the total land area for analysis'),
key="land_size_input"
)
land_unit = st.selectbox(
t('upload_land_unit', 'Unit'),
options=['hectares', 'acres', 'square_meters'],
index=['hectares', 'acres', 'square_meters'].index(st.session_state.land_yield_data['land_unit']),
key="land_unit_input"
)
st.session_state.land_yield_data['land_size'] = land_size
st.session_state.land_yield_data['land_unit'] = land_unit
with col2:
st.markdown(f"#### 🌾 {t('upload_current_yield', 'Current Yield')}")
current_yield = st.number_input(
t('upload_current_yield', 'Current Yield'),
min_value=0,
max_value=1000,
value=st.session_state.land_yield_data['current_yield'],
step=1,
help=t('upload_current_yield_help', 'Enter the current yield per unit area'),
key="current_yield_input"
)
yield_unit = st.selectbox(
t('upload_yield_unit', 'Yield Unit'),
options=['tonnes/hectare', 'kg/hectare', 'tonnes/acre', 'kg/acre'],
index=['tonnes/hectare', 'kg/hectare', 'tonnes/acre', 'kg/acre'].index(st.session_state.land_yield_data['yield_unit']),
key="yield_unit_input"
)
st.session_state.land_yield_data['current_yield'] = current_yield
st.session_state.land_yield_data['yield_unit'] = yield_unit
with col3:
st.markdown(f"#### 🌴 {t('upload_palm_density', 'Palm Density')}")
palm_density = st.number_input(
t('upload_palms_per_hectare', 'Palms per Hectare'),
min_value=100,
max_value=200,
value=st.session_state.land_yield_data['palm_density'],
step=1,
help=t('upload_palm_density_help', 'Number of oil palm trees per hectare (typical: 136-148)'),
key="palm_density_input"
)
st.session_state.land_yield_data['palm_density'] = palm_density
with col4:
st.markdown(f"#### 🌱 {t('upload_palm_age', 'Palm Tree Age')}")
# Get current palm age value, ensure it's within valid range for display
current_palm_age = st.session_state.land_yield_data.get('palm_age', 0)
if current_palm_age < 0 or current_palm_age > 35:
current_palm_age = 0
palm_age = st.number_input(
t('upload_palm_age_years', 'Age (Years)'),
min_value=0,
max_value=35,
value=current_palm_age,
step=1,
help=t('upload_palm_age_help', 'Enter the age of your palm trees (1-35 years)'),
key="palm_age_input"
)
# Validation message for palm age
if palm_age == 0:
st.caption("⚠️ " + t('upload_palm_age_error', 'Please enter a valid age between 1 and 35 years'))
else:
st.caption(f"✅ {palm_age} " + ("years old" if palm_age > 1 else "year old"))
st.session_state.land_yield_data['palm_age'] = palm_age
# Soil Type Section
st.markdown("---")
st.markdown(f"### 🏔️ {t('upload_soil_type', 'What soil type do you have?')}")
# Define soil type options with translation keys
soil_type_options = [
('mineral', t('soil_type_mineral', 'Mineral soil')),
('peat', t('soil_type_peat', 'Peat soil')),
('alluvial', t('soil_type_alluvial', 'River alluvial soil')),
('bris', t('soil_type_bris', 'Coastal sandy soil (BRIS)')),
('acid_sulfate', t('soil_type_acid_sulfate', 'Acid sulfate soil')),
('saline', t('soil_type_saline', 'Coastal saline soil')),
('laterite', t('soil_type_laterite', 'Shallow laterite soil, stony soil')),
('limestone', t('soil_type_limestone', 'Limestone soil, coral soil')),
('not_sure', t('soil_type_not_sure', 'Not sure'))
]
# Get current soil type selection
current_soil_type = st.session_state.land_yield_data.get('soil_type', '')
# Find the index of current selection
soil_type_keys = [opt[0] for opt in soil_type_options]
soil_type_labels = [opt[1] for opt in soil_type_options]
# Create radio buttons for soil type selection
selected_soil_label = st.radio(
t('upload_soil_type_help', 'Select the soil type of your plantation'),
options=soil_type_labels,
index=soil_type_keys.index(current_soil_type) if current_soil_type in soil_type_keys else None,
key="soil_type_input",
horizontal=True
)
# Map the selected label back to the key
if selected_soil_label:
selected_soil_key = soil_type_keys[soil_type_labels.index(selected_soil_label)]
st.session_state.land_yield_data['soil_type'] = selected_soil_key
else:
st.session_state.land_yield_data['soil_type'] = ''
st.markdown("---")
# Display summary
soil_type_display = selected_soil_label if selected_soil_label else "Not selected"
if land_size > 0 or current_yield > 0:
st.info(f"📊 **Summary:** {land_size} {land_unit} | {current_yield} {yield_unit} | {palm_density} palms/ha | {palm_age} years | {soil_type_display}")
# Save button for land & yield data
col_save1, col_save2, col_save3 = st.columns([1, 2, 1])
with col_save2:
if st.button("💾 Save Land & Yield Data", type="secondary", width="stretch", key="save_land_yield"):
if land_size > 0 and current_yield > 0:
try:
from utils.firebase_config import get_firestore_client, initialize_firebase
db = get_firestore_client()
if not db:
initialize_firebase()
db = get_firestore_client()
if db:
machine_id = get_machine_id()
# Store in separate collection 'land_yield_data' using machine_id as document ID
land_yield_ref = db.collection('land_yield_data').document(machine_id)
# Check if document exists to preserve created_at
existing_doc = land_yield_ref.get()
created_at = existing_doc.to_dict().get('created_at', datetime.now()) if existing_doc.exists else datetime.now()
land_yield_ref.set({
'land_size': land_size,
'land_unit': land_unit,
'current_yield': current_yield,
'yield_unit': yield_unit,
'palm_density': palm_density,
'palm_age': palm_age,
'soil_type': st.session_state.land_yield_data.get('soil_type', ''),
'machine_id': machine_id,
'last_updated': datetime.now(),
'created_at': created_at
}, merge=True)
st.success("✅ Land & Yield data saved successfully!")
else:
st.error("❌ Database connection not available.")
except Exception as e:
st.error(f"❌ Failed to save data: {str(e)}")
else:
st.warning("⚠️ Please enter both land size and current yield before saving.")
# Analysis button section
st.markdown("---")
# Check requirements - validate files are actually accessible
soil_uploaded = False
leaf_uploaded = False
# Check if soil file exists and is valid
if st.session_state.get('soil_file') is not None:
try:
# Try to access file attributes to verify it's valid
soil_file_obj = st.session_state.soil_file
if hasattr(soil_file_obj, 'name') or hasattr(soil_file_obj, 'getvalue'):
soil_uploaded = True
except Exception:
# If file is invalid, try to restore from cache
if 'soil_file_data' in st.session_state:
try:
from io import BytesIO
cached_file = BytesIO(st.session_state.soil_file_data)
cached_file.name = st.session_state.get('soil_file_name', 'soil_file')
cached_file.type = st.session_state.get('soil_file_type', 'application/octet-stream')
st.session_state.soil_file = cached_file
soil_uploaded = True
except Exception:
soil_uploaded = False
# Check if leaf file exists and is valid
if st.session_state.get('leaf_file') is not None:
try:
# Try to access file attributes to verify it's valid
leaf_file_obj = st.session_state.leaf_file
if hasattr(leaf_file_obj, 'name') or hasattr(leaf_file_obj, 'getvalue'):
leaf_uploaded = True
except Exception:
# If file is invalid, try to restore from cache
if 'leaf_file_data' in st.session_state:
try:
from io import BytesIO
cached_file = BytesIO(st.session_state.leaf_file_data)
cached_file.name = st.session_state.get('leaf_file_name', 'leaf_file')
cached_file.type = st.session_state.get('leaf_file_type', 'application/octet-stream')
st.session_state.leaf_file = cached_file
leaf_uploaded = True
except Exception:
leaf_uploaded = False
palm_age_valid = palm_age >= 1 and palm_age <= 35
soil_type_selected = st.session_state.land_yield_data.get('soil_type', '') != ''
land_yield_provided = land_size > 0 and current_yield > 0 and palm_age_valid and soil_type_selected
# CRITICAL: First update session state from URL params to get latest values
# This must happen BEFORE checking can_start_analysis() to ensure accurate limit checking
limit_info = None
uploads_used = 0
uploads_limit = 0
uploads_remaining = 0
try:
from utils.cropdrive_integration import get_upload_limit_info
limit_info = get_upload_limit_info()
except ImportError:
# CropDrive integration not available
pass
except Exception:
# Error getting limit info
pass
if soil_uploaded and leaf_uploaded and land_yield_provided:
# Show upload limit info if available
# CRITICAL: Always refresh from URL params to get latest count (parent may have updated it)
try:
query_params = st.query_params
url_uploads_used = query_params.get('uploadsUsed', '')
url_uploads_limit = query_params.get('uploadsLimit', '')
url_uploads_remaining = query_params.get('uploadsRemaining', '')
# Use URL params if available (most up-to-date), otherwise use limit_info
if url_uploads_used and url_uploads_limit:
try:
uploads_used = int(url_uploads_used)
uploads_limit = int(url_uploads_limit)
if url_uploads_remaining:
try:
uploads_remaining = int(url_uploads_remaining) if url_uploads_remaining != 'infinity' and url_uploads_remaining != '-1' else float('inf')
except (ValueError, TypeError):
uploads_remaining = max(0, uploads_limit - uploads_used)
else:
uploads_remaining = max(0, uploads_limit - uploads_used)
# Update session state with latest values
st.session_state.uploads_used = uploads_used
st.session_state.uploads_limit = uploads_limit
st.session_state.uploads_remaining = uploads_remaining
except (ValueError, TypeError):
# Fallback to limit_info if URL params invalid
uploads_used = limit_info.get('uploads_used', 0) if limit_info else 0
uploads_limit = limit_info.get('uploads_limit', 0) if limit_info else 0
uploads_remaining = limit_info.get('uploads_remaining', 0) if limit_info else 0
else:
# Use limit_info if URL params not available
uploads_used = limit_info.get('uploads_used', 0) if limit_info else 0
uploads_limit = limit_info.get('uploads_limit', 0) if limit_info else 0
uploads_remaining = limit_info.get('uploads_remaining', 0) if limit_info else 0
except Exception as e:
# Fallback to limit_info on error
uploads_used = limit_info.get('uploads_used', 0) if limit_info else 0
uploads_limit = limit_info.get('uploads_limit', 0) if limit_info else 0
uploads_remaining = limit_info.get('uploads_remaining', 0) if limit_info else 0
# CRITICAL: Now check if analysis can start AFTER updating session state
can_start = True
try:
from utils.cropdrive_integration import can_start_analysis
can_start = can_start_analysis()
except ImportError:
# CropDrive integration not available, allow analysis
can_start = True
except Exception:
# Error checking limits, allow analysis to proceed
can_start = True
if limit_info or (uploads_limit > 0):
# Only show limit info if limit is set (greater than 0)
if uploads_limit > 0:
if uploads_remaining == float('inf') or uploads_remaining == -1:
st.info(f"📊 **Analyses:** Unlimited")
else:
# Display: X/Y used (Z remaining)
# Example: 0/2 used (2 remaining), 1/2 used (1 remaining), 2/2 used (0 remaining)
st.info(f"📊 **Analyses:** {uploads_used}/{uploads_limit} used ({uploads_remaining} remaining)")
# Check if limit exceeded
if not can_start:
st.error("❌ **Analysis Limit Reached**")
st.info("💡 You have reached your analysis limit. Please upgrade your plan to continue analyzing lab reports.")
st.button(f"🚀 {t('upload_start_analysis')}", disabled=True, width="stretch", key="start_analysis_disabled_limit")
elif st.button(f"🚀 {t('upload_start_analysis')}", type="primary", width="stretch", key="start_analysis"):
# Ensure files are valid before passing to analysis
try:
# Double-check limit before starting (in case it changed)
try:
from utils.cropdrive_integration import can_start_analysis
if not can_start_analysis():
st.error("❌ **Analysis Limit Reached**")
st.info("💡 You have reached your analysis limit. Please upgrade your plan to continue analyzing lab reports.")
st.stop()
except Exception:
# If check fails, allow to proceed
pass
soil_file = st.session_state.soil_file
leaf_file = st.session_state.leaf_file
# Verify files are accessible
if not hasattr(soil_file, 'getvalue') and 'soil_file_data' in st.session_state:
from io import BytesIO
soil_file = BytesIO(st.session_state.soil_file_data)
soil_file.name = st.session_state.get('soil_file_name', 'soil_file')
soil_file.type = st.session_state.get('soil_file_type', 'application/octet-stream')
if not hasattr(leaf_file, 'getvalue') and 'leaf_file_data' in st.session_state:
from io import BytesIO
leaf_file = BytesIO(st.session_state.leaf_file_data)
leaf_file.name = st.session_state.get('leaf_file_name', 'leaf_file')
leaf_file.type = st.session_state.get('leaf_file_type', 'application/octet-stream')
st.session_state.analysis_data = {
'soil_file': soil_file,
'leaf_file': leaf_file,
'land_yield_data': st.session_state.land_yield_data
}
st.session_state.current_page = 'results'
st.rerun()
except Exception as e:
st.error(f"Error preparing files for analysis: {str(e)}")
st.info("Please try uploading the files again.")
else:
st.warning(f"⚠️ **{t('upload_requirements')}**")
if not soil_uploaded:
st.info(f"• {t('upload_need_soil')}")
if not leaf_uploaded:
st.info(f"• {t('upload_need_leaf')}")
if land_size == 0 or current_yield == 0:
st.info(f"• {t('upload_need_yield')}")
if not palm_age_valid:
st.info(f"• {t('upload_need_palm_age', 'Enter a valid palm tree age (1-35 years)')}")
if not soil_type_selected:
st.info(f"• {t('upload_need_soil_type', 'Select your soil type')}")
st.button(f"🚀 {t('upload_start_analysis')}", disabled=True, width="stretch", key="start_analysis_disabled")
def _parse_numeric_token(token: str):
"""Parse a single OCR token into float; N.D. / ND / <x become 0.0 or the number."""
if token is None:
return None
text = str(token).strip()
if not text:
return None
upper = text.upper().replace(' ', '')
if upper in ('N.D.', 'N.D', 'ND', 'N/A', 'NA', '-', '--'):
return 0.0
# Handle <1, <0.01 etc. as 0 for structured numeric use
if text.startswith('<') or text.startswith('>'):
text = text[1:].strip()
if not text:
return 0.0
cleaned = re.sub(r'[^\d.\-]', '', text)
if not cleaned or cleaned in ('.', '-', '-.'):
return None
try:
return float(cleaned)
except (ValueError, TypeError):
return None
def _score_soil_window(window: list) -> float:
"""Higher = more realistic oil-palm soil lab row (pH, N, OrgC, P, cations, CEC)."""
if len(window) < 5:
return -100.0
score = 0.0
ph = window[0]
# pH must look like pH
if 3.0 <= ph <= 7.5:
score += 5.0
elif 2.5 <= ph <= 9.0:
score += 2.0
else:
score -= 8.0
# N (%) typically 0.03–0.40
if len(window) > 1:
n = window[1]
if 0.02 <= n <= 0.5:
score += 3.0
elif n > 2:
score -= 4.0
# Org C (%) typically 0.2–5
if len(window) > 2:
oc = window[2]
if 0.1 <= oc <= 6.0:
score += 2.0
elif oc > 20:
score -= 3.0
# Total P mg/kg often 5–400
if len(window) > 3:
tp = window[3]
if 1 <= tp <= 800:
score += 2.0
elif 0 < tp < 1:
score -= 2.0
# Avail P
if len(window) > 4:
ap = window[4]
if 0 <= ap <= 80:
score += 1.5
# Exch cations small
for idx in (5, 6, 7):
if len(window) > idx and 0 <= window[idx] <= 15:
score += 0.5
# CEC usually > exch cations and 1–40
if len(window) > 8:
cec = window[8]
if 1 <= cec <= 50:
score += 2.0
if len(window) > 5 and cec >= window[5]:
score += 0.5
return score
def _score_leaf_window(window: list) -> float:
"""Higher = more realistic oil-palm leaf lab row (N,P,K,Mg,Ca,B,Cu,Zn)."""
if len(window) < 5:
return -100.0
score = 0.0
n = window[0]
# Leaf N % typically ~1.8–3.2
if 1.6 <= n <= 3.5:
score += 6.0
elif 1.2 <= n <= 4.0:
score += 3.0
else:
score -= 8.0
# P % typically 0.08–0.25
if len(window) > 1:
p = window[1]
if 0.08 <= p <= 0.30:
score += 4.0
elif p > 1.0:
score -= 5.0 # shifted N sitting in P slot
# K % typically 0.4–1.5
if len(window) > 2:
k = window[2]
if 0.35 <= k <= 2.0:
score += 2.0
elif k > 5:
score -= 2.0
# Mg, Ca %
if len(window) > 3 and 0.05 <= window[3] <= 0.8:
score += 1.0
if len(window) > 4 and 0.2 <= window[4] <= 1.5:
score += 1.0
# B mg/kg typically 8–30; Cu 1–10; Zn 5–30
if len(window) > 5:
b = window[5]
if 5 <= b <= 50:
score += 3.0
elif b < 1:
score -= 3.0 # Ca sitting in B slot
if len(window) > 6 and 0 <= window[6] <= 15:
score += 1.0
if len(window) > 7 and 3 <= window[7] <= 40:
score += 1.0
return score
def _align_numbers_to_params(numbers: list, params: list, sample_id: str = '', kind: str = 'soil') -> dict:
"""Map OCR number sequence onto params by sliding-window fitness (no hardcoded samples).
Handles leading junk (lab serial, row index, year) that otherwise shifts all columns —
e.g. leaf N=2.13 becoming P because a leading 1.0 was treated as N.
"""
if not numbers or not params:
return {}
nums = list(numbers)
# Drop large digits that repeat the sample lab number (e.g. 218 from S218/25)
if sample_id:
id_digits = re.findall(r'\d+', sample_id)
while nums and any(abs(nums[0] - float(d)) < 1e-9 for d in id_digits if float(d) >= 10):
if nums[0] >= 10:
nums = nums[1:]
else:
break
n_params = len(params)
scorer = _score_soil_window if kind == 'soil' else _score_leaf_window
if len(nums) < 3:
return {params[i]: nums[i] for i in range(len(nums))}
best_score = -1e9
best_window = nums[:n_params]
# Try every alignment window (extra leading/trailing OCR numbers)
max_start = max(0, len(nums) - n_params)
for start in range(0, max_start + 1):
window = nums[start:start + n_params]
if len(window) < min(5, n_params):
continue
# pad short windows
while len(window) < n_params:
window = window # no pad for scoring; scorer handles short
break
s = scorer(window)
# prefer earlier windows slightly when scores tie
s -= start * 0.01
if s > best_score:
best_score = s
best_window = window
# If best score is still terrible, fall back to first plausible anchor
if kind == 'soil' and best_score < 0:
for start, val in enumerate(nums):
if 2.5 <= val <= 9.5:
best_window = nums[start:start + n_params]
break
elif kind == 'leaf' and best_score < 0:
for start, val in enumerate(nums):
if 1.5 <= val <= 3.5:
# next should look like P if available
if start + 1 < len(nums) and nums[start + 1] > 1.0:
continue
best_window = nums[start:start + n_params]
break
sample_data = {}
for i, param in enumerate(params):
if i < len(best_window):
sample_data[param] = best_window[i]
return sample_data
def _align_soil_numbers_to_params(numbers: list, params: list, sample_id: str = '') -> dict:
"""Backward-compatible soil aligner."""
return _align_numbers_to_params(numbers, params, sample_id, kind='soil')
def _parse_sp_lab_vertical_document(text: str, sample_prefix: str, params: list) -> dict:
"""Parse SP Lab reports where Document AI dumps one token per line.
Real layout (user OCR)::
S218/25
S219/25
...
1
2
3
PH
5.0
4.3
...
Nitrogen
0.10
...
Sample IDs form columns; each parameter label is followed by one value
per sample (same order). Multiple table sections are supported.
"""
if not text:
return {}
lines = [ln.strip() for ln in text.split('\n') if ln.strip()]
prefix = sample_prefix.upper()
id_re = re.compile(rf'^{prefix}\d{{1,4}}\s*/\s*\d{{2}}$', re.I)
id_find = re.compile(rf'\b({prefix}\d{{1,4}}\s*/\s*\d{{2}})\b', re.I)
def canon(sid: str) -> str:
sid = re.sub(r'\s+', '', sid.strip())
return sid[0].upper() + sid[1:] if sid else sid
# Soil / leaf parameter label matchers (order matters for specificity)
if params and params[0] == 'pH':
label_specs = [
(re.compile(r'^pH$', re.I), 'pH'),
(re.compile(r'^PH$', re.I), 'pH'),
(re.compile(r'^Nitrogen$', re.I), 'N (%)'),
(re.compile(r'^N\s*\(%\)$', re.I), 'N (%)'),
(re.compile(r'^Organic\s*Carbon$', re.I), 'Org. C (%)'),
(re.compile(r'^Org\.?\s*C', re.I), 'Org. C (%)'),
(re.compile(r'^Total\s*P', re.I), 'Total P (mg/kg)'),
(re.compile(r'^Available\s*P', re.I), 'Avail P (mg/kg)'),
(re.compile(r'^Avail\.?\s*P', re.I), 'Avail P (mg/kg)'),
(re.compile(r'^Exch\.?\s*K', re.I), 'Exch. K (meq%)'),
(re.compile(r'^Exch\.?\s*Ca', re.I), 'Exch. Ca (meq%)'),
(re.compile(r'^Exch\.?\s*Mg', re.I), 'Exch. Mg (meq%)'),
(re.compile(r'^C\.?E\.?C\.?$', re.I), 'CEC (meq%)'),
]
else:
label_specs = [
(re.compile(r'^N(?:itrogen)?$', re.I), 'N (%)'),
(re.compile(r'^P(?:hos(?:phorus)?)?$', re.I), 'P (%)'),
(re.compile(r'^K(?:alium|potassium)?$', re.I), 'K (%)'),
(re.compile(r'^Mg(?:agnesium)?$', re.I), 'Mg (%)'),
(re.compile(r'^Ca(?:lcium)?$', re.I), 'Ca (%)'),
(re.compile(r'^B(?:oron)?$', re.I), 'B (mg/kg)'),
(re.compile(r'^Cu(?:pper)?$', re.I), 'Cu (mg/kg)'),
(re.compile(r'^Zn(?:inc)?$', re.I), 'Zn (mg/kg)'),
]
skip_labels = re.compile(
r'^(Exchangeable|Parameter|Lab\s*No.*|Analysis|Date|Page|Serial|'
r'Your\s*Ref|TEST\s*REPORT|SP\s*LAB|Sarawak|Non-?Detected|'
r'%|mg/kg|meq%|meq/?%?)$',
re.I,
)
def match_param_label(line: str):
for preg, key in label_specs:
if preg.match(line.strip()):
return key
return None
def is_pure_index(line: str) -> bool:
"""Column index rows like 1,2,3...10 that appear under sample IDs."""
return bool(re.fullmatch(r'\d{1,2}', line.strip()))
def is_value_token(line: str) -> bool:
s = line.strip()
if not s:
return False
if id_re.match(s) or id_find.search(s):
return False
if match_param_label(s):
return False
if skip_labels.match(s):
return False
# N.D. / ND
if re.fullmatch(r'N\.?\s*D\.?', s, re.I):
return True
if re.fullmatch(r'<?\d+\.?\d*', s):
return True
return False
def parse_value(line: str):
s = line.strip()
if re.fullmatch(r'N\.?\s*D\.?', s, re.I):
return 0.0
return _parse_numeric_token(s)
# Split document into table sections (each starts near sample IDs after "Lab No" / "Parameter")
sections = []
current = []
for line in lines:
if re.search(r'Lab\s*No', line, re.I) and current:
sections.append(current)
current = [line]
else:
current.append(line)
if current:
sections.append(current)
# If no clear section markers, treat whole doc as one section
if len(sections) <= 1:
# Also try splitting when a new block of sample IDs appears after parameters
sections = [lines]
all_samples = {}
def parse_section(sec_lines: list) -> dict:
# Collect sample IDs in order of appearance (within this section)
sample_ids = []
seen = set()
for line in sec_lines:
for m in id_find.finditer(line):
sid = canon(m.group(1))
if sid not in seen:
seen.add(sid)
sample_ids.append(sid)
if len(sample_ids) < 1:
return {}
n = len(sample_ids)
# param -> list of n values
param_cols = {p: None for p in params}
i = 0
while i < len(sec_lines):
line = sec_lines[i]
# Skip sample id lines, indices, units, headers
if id_find.search(line) and not match_param_label(line):
i += 1
continue
if is_pure_index(line):
i += 1
continue
if skip_labels.match(line):
i += 1
continue
pkey = match_param_label(line)
if pkey and pkey in param_cols:
# Collect the next `n` value tokens after this parameter label.
# IMPORTANT: after a label, digits like 59 / 2 / 1 are REAL lab
# values (Total P, Available P), NOT column indices 1..10.
values = []
j = i + 1
while j < len(sec_lines) and len(values) < n:
nxt = sec_lines[j]
# Stop if we hit next param label
if match_param_label(nxt):
break
# Units / section words only — do not treat digits as indices here
if skip_labels.match(nxt):
j += 1
# If we already have values and hit a unit line, we're done
if values:
break
continue
if id_find.search(nxt):
break
if re.fullmatch(r'N\.?\s*D\.?', nxt, re.I) or re.fullmatch(r'<?\d+\.?\d*', nxt):
val = parse_value(nxt)
if val is not None:
values.append(val)
j += 1
else:
j += 1
if values:
break
if len(values) >= n:
param_cols[pkey] = values[:n]
elif len(values) > 0:
# Accept partial only if nearly complete (e.g. trailing missing)
if len(values) >= n - 1:
param_cols[pkey] = values
i = j
continue
i += 1
# Require at least pH/N + a few more params filled
filled = [p for p in params if param_cols.get(p)]
if len(filled) < 3:
return {}
# Normalize lengths: use min available
out = {sid: {} for sid in sample_ids}
for p in params:
col = param_cols.get(p)
if not col:
continue
for idx, sid in enumerate(sample_ids):
if idx < len(col):
out[sid][p] = col[idx]
# Drop empty
return {sid: data for sid, data in out.items() if data}
# Parse each Lab-No section separately (critical: each table has its own
# sample count — do NOT parse the whole doc as one 10-column table).
for sec in sections:
part = parse_section(sec)
for sid, data in part.items():
if sid not in all_samples:
all_samples[sid] = data
else:
# Merge params; prefer non-empty / longer
for k, v in data.items():
if k not in all_samples[sid]:
all_samples[sid][k] = v
# If Lab-No split failed, try sample-id cluster split
if len(all_samples) < 2:
clusters = []
cluster = []
saw_id = False
for line in lines:
has_id = bool(id_find.search(line))
if has_id:
if saw_id is False and cluster and any(id_find.search(x) for x in cluster):
# new cluster after params
clusters.append(cluster)
cluster = []
saw_id = True
cluster.append(line)
else:
if cluster:
cluster.append(line)
# reset saw_id after we leave a run of IDs and hit a param
if match_param_label(line):
saw_id = False
if cluster:
clusters.append(cluster)
for cl in clusters:
part = parse_section(cl)
all_samples.update(part)
# Last resort: whole document only if still empty
if not all_samples:
all_samples = parse_section(lines)
return all_samples
def _extract_sp_lab_samples_from_text(text: str, sample_prefix: str, params: list) -> dict:
"""
Parse SP Lab samples (e.g. S218/25 or P220/25) from real OCR text.
Never uses hardcoded values — structured data must match Raw OCR Text.
Handles:
- Vertical Document AI dumps (one token per line) — SP Lab official layout
- Row-per-sample: S218/25 5.26 0.12 0.91 ...
- Column-major / transposed (samples on one line, params as rows)
- Leading junk numbers before pH (lab serial bleeding into values)
"""
samples = {}
if not text:
return samples
# ------------------------------------------------------------------
# Strategy V (highest priority): vertical one-token-per-line SP Lab OCR
# ------------------------------------------------------------------
vertical = _parse_sp_lab_vertical_document(text, sample_prefix, params)
if vertical:
# Validate soil pH columns look sane before accepting
if params and params[0] == 'pH':
ph_ok = sum(
1 for d in vertical.values()
if isinstance(d.get('pH'), (int, float)) and 2.5 <= d['pH'] <= 9.5
)
if ph_ok >= max(1, len(vertical) // 2):
return vertical
else:
# leaf: N in range
n_ok = sum(
1 for d in vertical.values()
if isinstance(d.get('N (%)'), (int, float)) and 1.2 <= d['N (%)'] <= 4.0
)
if n_ok >= max(1, len(vertical) // 2) or len(vertical) >= 1:
return vertical
# even if validation weak, prefer vertical if it found many samples with many params
avg_params = sum(len(d) for d in vertical.values()) / max(len(vertical), 1)
if len(vertical) >= 3 and avg_params >= 5:
return vertical
lines = [ln.strip() for ln in text.split('\n') if ln.strip()]
joined = ' '.join(lines)
joined_norm = re.sub(r'[^\w\s\.\-\(\)\[\]\/<>%]', ' ', joined)
joined_norm = re.sub(r'\s+', ' ', joined_norm)
prefix = sample_prefix.upper()
id_re = re.compile(rf'\b({prefix}\d{{1,4}}\s*/\s*\d{{2}})\b', re.IGNORECASE)
def _canonical_sample_id(raw_id: str) -> str:
sid = re.sub(r'\s+', '', raw_id.strip())
if sid and sid[0].isalpha():
return sid[0].upper() + sid[1:]
return sid
def _tokens_to_numbers(tokens):
numbers = []
for tok in tokens:
tok_s = str(tok).strip()
if id_re.fullmatch(tok_s) or id_re.fullmatch(re.sub(r'\s+', '', tok_s)):
continue
val = _parse_numeric_token(tok_s)
if val is not None:
numbers.append(val)
return numbers
min_needed = max(3, min(5, len(params) - 2))
is_soil = bool(params and params[0] == 'pH')
# ------------------------------------------------------------------
# Strategy T: transposed / column-major SP Lab layout (values on same line)
# ------------------------------------------------------------------
def _parse_transposed() -> dict:
# Collect ordered unique sample IDs as they appear
id_matches = list(id_re.finditer(joined_norm))
if len(id_matches) < 2:
return {}
sample_ids = []
seen = set()
for m in id_matches:
sid = _canonical_sample_id(m.group(1))
if sid not in seen:
seen.add(sid)
sample_ids.append(sid)
n_samples = len(sample_ids)
if n_samples < 2:
return {}
# Parameter row labels → param key
param_row_patterns = []
if is_soil:
param_row_patterns = [
(re.compile(r'^\s*pH\b', re.I), 'pH'),
(re.compile(r'^\s*N(?:itrogen)?\b(?!\s*/)', re.I), 'N (%)'),
(re.compile(r'^\s*(?:Org\.?\s*C|Organic\s*Carbon)\b', re.I), 'Org. C (%)'),
(re.compile(r'^\s*Total\s*P\b', re.I), 'Total P (mg/kg)'),
(re.compile(r'^\s*Avail(?:able)?\s*P\b', re.I), 'Avail P (mg/kg)'),
(re.compile(r'^\s*Exch\.?\s*K\b', re.I), 'Exch. K (meq%)'),
(re.compile(r'^\s*Exch\.?\s*Ca\b', re.I), 'Exch. Ca (meq%)'),
(re.compile(r'^\s*Exch\.?\s*Mg\b', re.I), 'Exch. Mg (meq%)'),
(re.compile(r'^\s*C\.?E\.?C\b', re.I), 'CEC (meq%)'),
]
else:
param_row_patterns = [
(re.compile(r'^\s*N(?:itrogen)?\b', re.I), 'N (%)'),
(re.compile(r'^\s*P(?:hos)?\b', re.I), 'P (%)'),
(re.compile(r'^\s*K(?:alium|potassium)?\b', re.I), 'K (%)'),
(re.compile(r'^\s*Mg\b', re.I), 'Mg (%)'),
(re.compile(r'^\s*Ca\b', re.I), 'Ca (%)'),
(re.compile(r'^\s*B(?:oron)?\b', re.I), 'B (mg/kg)'),
(re.compile(r'^\s*Cu\b', re.I), 'Cu (mg/kg)'),
(re.compile(r'^\s*Zn\b', re.I), 'Zn (mg/kg)'),
]
# Build param → list of values (one per sample column)
param_columns = {p: [] for p in params}
rows_matched = 0
for line in lines:
# Skip pure sample-id header lines
if id_re.search(line) and len(_tokens_to_numbers(re.split(r'\s+', line))) < n_samples:
continue
matched_param = None
matched_preg = None
for preg, pkey in param_row_patterns:
if preg.search(line) and pkey in param_columns:
matched_param = pkey
matched_preg = preg
break
if not matched_param or not matched_preg:
continue
# Numbers on this row after the label
vals_part = matched_preg.sub('', line, count=1)
vals_part = re.sub(r'\bN\.?\s*D\.?\b', '0', vals_part, flags=re.I)
vals_part = re.sub(r'<(\d+\.?\d*)', r'\1', vals_part)
numbers = _tokens_to_numbers(re.split(r'\s+', vals_part.strip()))
if len(numbers) >= n_samples:
param_columns[matched_param] = numbers[:n_samples]
rows_matched += 1
elif len(numbers) >= 2:
param_columns[matched_param] = numbers
rows_matched += 1
# Need at least pH (or N for leaf) + a few more rows
filled = sum(1 for p in params if param_columns.get(p))
if filled < min_needed:
return {}
found = {}
for col_idx, sid in enumerate(sample_ids):
sample_data = {}
for p in params:
col_vals = param_columns.get(p) or []
if col_idx < len(col_vals):
sample_data[p] = col_vals[col_idx]
if sample_data:
found[sid] = sample_data
return found
transposed = _parse_transposed()
if transposed and len(transposed) >= 2:
# Validate soil pH columns look sane
if is_soil:
ph_ok = sum(
1 for s in transposed.values()
if isinstance(s.get('pH'), (int, float)) and 2.5 <= s['pH'] <= 9.5
)
if ph_ok >= max(1, len(transposed) // 2):
return transposed
else:
return transposed
kind = 'soil' if is_soil else 'leaf'
def _parse_between_ids(source_text: str) -> dict:
"""Split source on sample IDs and map numbers after each ID to params."""
found = {}
matches = list(id_re.finditer(source_text))
for i, m in enumerate(matches):
sample_id = _canonical_sample_id(m.group(1))
start = m.end()
end = matches[i + 1].start() if i + 1 < len(matches) else len(source_text)
chunk = source_text[start:end]
chunk = re.sub(r'\bN\.?\s*D\.?\b', '0', chunk, flags=re.IGNORECASE)
chunk = re.sub(r'<(\d+\.?\d*)', r'\1', chunk)
tokens = re.split(r'\s+', chunk.strip()) if chunk.strip() else []
numbers = _tokens_to_numbers(tokens)
if len(numbers) >= min_needed:
sample_data = _align_numbers_to_params(numbers, params, sample_id, kind=kind)
if sample_data:
found[sample_id] = sample_data
return found
# --- Strategy A: sequential IDs on each line ---
for line in lines:
samples.update(_parse_between_ids(line))
# --- Strategy B: full flattened text ---
full_samples = _parse_between_ids(joined_norm)
if not samples:
samples = full_samples
elif len(full_samples) > len(samples):
samples = full_samples
else:
# Merge: prefer samples with valid pH / more params
for sid, data in full_samples.items():
if sid not in samples:
samples[sid] = data
elif is_soil:
old_ph = samples[sid].get('pH')
new_ph = data.get('pH')
if (not isinstance(old_ph, (int, float)) or not (2.5 <= old_ph <= 9.5)) and (
isinstance(new_ph, (int, float)) and 2.5 <= new_ph <= 9.5
):
samples[sid] = data
elif len(data) > len(samples[sid]):
samples[sid] = data
# If we only got one sample but many IDs, transposed may have partially failed —
# try building from pH-labeled line alone as recovery
id_count = len(list(id_re.finditer(joined_norm)))
if id_count >= 2 and len(samples) < id_count and is_soil:
# Find "pH ..." line with enough numbers
for line in lines:
if re.search(r'\bpH\b', line, re.I):
ph_nums = _tokens_to_numbers(re.split(r'\s+', re.sub(r'(?i)\bpH\b', ' ', line)))
sids = [_canonical_sample_id(m.group(1)) for m in id_re.finditer(joined_norm)]
# unique preserve order
uniq = []
seen = set()
for s in sids:
if s not in seen:
seen.add(s)
uniq.append(s)
if len(ph_nums) >= len(uniq) >= 2:
for i, sid in enumerate(uniq):
if sid not in samples:
samples[sid] = {}
samples[sid]['pH'] = ph_nums[i]
break
# --- Strategy C: labeled pairs per sample block ---
if not samples:
matches = list(id_re.finditer(joined_norm))
label_aliases = {
'ph': 'pH',
'n': 'N (%)',
'nitrogen': 'N (%)',
'org': 'Org. C (%)',
'organic': 'Org. C (%)',
'orgc': 'Org. C (%)',
'total': 'Total P (mg/kg)',
'totalp': 'Total P (mg/kg)',
'avail': 'Avail P (mg/kg)',
'available': 'Avail P (mg/kg)',
'availp': 'Avail P (mg/kg)',
'exchk': 'Exch. K (meq%)',
'exchca': 'Exch. Ca (meq%)',
'exchmg': 'Exch. Mg (meq%)',
'k': 'Exch. K (meq%)' if prefix == 'S' else 'K (%)',
'ca': 'Exch. Ca (meq%)' if prefix == 'S' else 'Ca (%)',
'mg': 'Exch. Mg (meq%)' if prefix == 'S' else 'Mg (%)',
'cec': 'CEC (meq%)',
'ce': 'CEC (meq%)',
'p': 'P (%)',
'b': 'B (mg/kg)',
'cu': 'Cu (mg/kg)',
'zn': 'Zn (mg/kg)',
}
for i, m in enumerate(matches):
sample_id = _canonical_sample_id(m.group(1))
start = m.end()
end = matches[i + 1].start() if i + 1 < len(matches) else len(joined_norm)
chunk = joined_norm[start:end]
sample_data = {}
pair_re = re.compile(
r'(pH|N(?:itrogen)?|Org\.?\s*C|Organic\s*Carbon|Total\s*P|Avail(?:able)?\s*P|'
r'Exch\.?\s*K|Exch\.?\s*Ca|Exch\.?\s*Mg|C\.?E\.?C|P|K|Mg|Ca|B|Cu|Zn)'
r'(?:\s*\([^)]*\))?\s*[:=\s]\s*(N\.?D\.?|<?\d+\.?\d*)',
re.IGNORECASE,
)
for pm in pair_re.finditer(chunk):
label = re.sub(r'[^a-zA-Z]', '', pm.group(1)).lower()
if label.startswith('org'):
key = 'Org. C (%)'
elif label.startswith('total'):
key = 'Total P (mg/kg)'
elif label.startswith('avail'):
key = 'Avail P (mg/kg)'
elif label.startswith('exch') and 'k' in pm.group(1).lower():
key = 'Exch. K (meq%)'
elif label.startswith('exch') and 'ca' in pm.group(1).lower():
key = 'Exch. Ca (meq%)'
elif label.startswith('exch') and 'mg' in pm.group(1).lower():
key = 'Exch. Mg (meq%)'
elif label in ('cec', 'ce'):
key = 'CEC (meq%)'
else:
key = label_aliases.get(label)
if not key or key not in params:
continue
val = _parse_numeric_token(pm.group(2))
if val is not None:
sample_data[key] = val
if sample_data:
samples[sample_id] = sample_data
return samples
def format_raw_text_as_structured_json(raw_text: str, container_type: str) -> dict:
"""Format raw OCR text into structured JSON format by analyzing the content.
Structured OCR Data must be derived from the same Raw OCR Text — never hardcoded samples.
"""
try:
# Initialize structured data
structured_data = {}
samples_data = {}
# Enhanced text preprocessing
raw_text = (raw_text or '').strip()
# Split text into lines and clean them
lines = [line.strip() for line in raw_text.split('\n') if line.strip()]
# Remove common OCR artifacts and normalize (used by farm-format strategies)
all_text = ' '.join(lines)
all_text = re.sub(r'[^\w\s\.\-\(\)\[\]\/]', ' ', all_text)
all_text = re.sub(r'\s+', ' ', all_text)
is_sp_soil = bool(
'SP LAB' in all_text.upper() or re.search(r'\bS\d{1,4}/\d{2}\b', all_text, re.IGNORECASE)
)
is_sp_leaf = bool(
'SP LAB' in all_text.upper() or re.search(r'\bP\d{1,4}/\d{2}\b', all_text, re.IGNORECASE)
)
if container_type.lower() == 'soil':
soil_params = [
'pH', 'N (%)', 'Org. C (%)', 'Total P (mg/kg)', 'Avail P (mg/kg)',
'Exch. K (meq%)', 'Exch. Ca (meq%)', 'Exch. Mg (meq%)', 'CEC (meq%)',
]
if is_sp_soil:
structured_data["SP_Lab_Test_Report"] = {}
else:
structured_data["Farm_Soil_Test_Data"] = {}
# Strategy 1: Parse REAL SP Lab samples from OCR text (S###/##)
if is_sp_soil:
samples_data = _extract_sp_lab_samples_from_text(raw_text, 'S', soil_params)
if samples_data:
structured_data["SP_Lab_Test_Report"] = samples_data
# Strategy 2: Farm sample patterns (S001, S002, etc.) — not SP Lab IDs
if not samples_data and not is_sp_soil:
sample_pattern = r'S(\d{1,3})\s*[:\-]?\s*([^S\n]*(?=S\d|\n|$))'
matches = re.findall(sample_pattern, all_text, re.IGNORECASE | re.DOTALL)
for match in matches[:12]:
sample_num, sample_values = match
sample_id = f"S{sample_num.zfill(3)}"
numbers = [float(x) for x in re.findall(r'(\d+\.?\d*)', sample_values)]
if len(numbers) >= 3:
sample_data = _align_numbers_to_params(numbers, soil_params, sample_id, kind='soil')
if sample_data and any(v != 0.0 for v in sample_data.values()):
samples_data[sample_id] = sample_data
# Strategy 3: Numbered samples (Sample 1, Sample 2, ...)
if not samples_data and not is_sp_soil:
sample_pattern = r'Sample\s*(\d{1,3})\s*[:\-]?\s*([^S\n]*(?=Sample\s*\d|\n|$))'
matches = re.findall(sample_pattern, all_text, re.IGNORECASE | re.DOTALL)
for match in matches[:12]:
sample_num, sample_values = match
sample_id = f"S{sample_num.zfill(3)}"
numbers = [float(x) for x in re.findall(r'(\d+\.?\d*)', sample_values)]
if len(numbers) >= 3:
sample_data = _align_numbers_to_params(numbers, soil_params, sample_id, kind='soil')
if sample_data and any(v != 0.0 for v in sample_data.values()):
samples_data[sample_id] = sample_data
# Strategy 4: Chunk all numbers into groups of 9 (farm tabular dump only)
if not samples_data and not is_sp_soil:
all_numbers = [float(x) for x in re.findall(r'(\d+\.?\d*)', all_text)]
if len(all_numbers) >= 27:
num_samples = min(12, len(all_numbers) // 9)
for i in range(num_samples):
sample_id = f"S{i+1:03d}"
start_idx = i * 9
chunk = all_numbers[start_idx:start_idx + 9]
sample_data = _align_numbers_to_params(chunk, soil_params, sample_id, kind='soil')
if sample_data and any(v != 0.0 for v in sample_data.values()):
samples_data[sample_id] = sample_data
# Strategy 5: Parameter-value pairs → single sample (last resort)
if not samples_data:
for param in soil_params:
param_pattern = rf'{re.escape(param.split()[0])}\s*[:=]\s*([^,\s\n]+)'
matches = re.findall(param_pattern, all_text, re.IGNORECASE)
for match in matches[:1]:
if not samples_data:
samples_data["S001"] = {}
value = match.strip()
if value.upper().replace('.', '') in ('ND', 'N/A', 'NA'):
value = '0'
try:
samples_data["S001"][param] = float(re.sub(r'[^\d.\-]', '', value) or '0')
except (ValueError, TypeError):
pass
# Attach samples to the correct container when not already set by SP Lab strategy
if samples_data and not structured_data.get("SP_Lab_Test_Report"):
container_key = "SP_Lab_Test_Report" if is_sp_soil else "Farm_Soil_Test_Data"
if container_key not in structured_data:
structured_data[container_key] = {}
for sample_id, sample_data in samples_data.items():
if sample_data and any(
(isinstance(v, (int, float)) and v != 0.0) or (not isinstance(v, (int, float)) and v)
for v in sample_data.values()
):
structured_data[container_key][sample_id] = sample_data
elif samples_data and is_sp_soil and not structured_data.get("SP_Lab_Test_Report"):
structured_data["SP_Lab_Test_Report"] = samples_data
elif container_type.lower() == 'leaf':
leaf_params = [
'N (%)', 'P (%)', 'K (%)', 'Mg (%)', 'Ca (%)',
'B (mg/kg)', 'Cu (mg/kg)', 'Zn (mg/kg)',
]
if is_sp_leaf:
structured_data["SP_Lab_Test_Report"] = {}
else:
structured_data["Farm_Leaf_Test_Data"] = {}
# Strategy 1: Parse REAL SP Lab leaf samples (P###/##)
if is_sp_leaf:
samples_data = _extract_sp_lab_samples_from_text(raw_text, 'P', leaf_params)
if samples_data:
structured_data["SP_Lab_Test_Report"] = samples_data
# Strategies for farm leaf (L001 style) — skip when SP Lab already filled
matches = []
if not samples_data and not is_sp_leaf:
sample_pattern = r'L(\d{1,3})\s*[:\-]?\s*([^L\n]*(?=L\d|\n|$))'
matches = re.findall(sample_pattern, all_text, re.IGNORECASE | re.DOTALL)
if not matches:
sample_pattern = r'Sample\s*(\d{1,3})\s*[:\-]?\s*([^S\n]*(?=Sample\s*\d|\n|$))'
matches = re.findall(sample_pattern, all_text, re.IGNORECASE | re.DOTALL)
processed_count = 0
for match in matches:
if processed_count >= 12:
break
sample_num, sample_values = match
sample_id = f"L{str(sample_num).zfill(3)}"
numbers = [float(x) for x in re.findall(r'(\d+\.?\d*)', sample_values)]
if len(numbers) >= 5:
sample_data = _align_numbers_to_params(numbers, leaf_params, sample_id, kind='leaf')
if sample_data and any(v != 0.0 for v in sample_data.values()):
samples_data[sample_id] = sample_data
processed_count += 1
# Tabular number chunking for farm leaf only
if not samples_data and not is_sp_leaf:
all_numbers = [float(x) for x in re.findall(r'(\d+\.?\d*)', all_text)]
if len(all_numbers) >= 40:
for i in range(min(12, len(all_numbers) // 8)):
sample_id = f"L{i+1:03d}"
start_idx = i * 8
chunk = all_numbers[start_idx:start_idx + 8]
sample_data = _align_numbers_to_params(chunk, leaf_params, sample_id, kind='leaf')
if sample_data and any(v != 0.0 for v in sample_data.values()):
samples_data[sample_id] = sample_data
# Parameter-value pairs last resort
if not samples_data:
for param in leaf_params:
param_name = param.split()[0]
param_pattern = rf'{re.escape(param_name)}\s*[:=]\s*(\d+\.?\d*)'
matches = re.findall(param_pattern, all_text, re.IGNORECASE)
if matches:
if not samples_data:
samples_data["L001"] = {}
try:
samples_data["L001"][param] = float(matches[0])
except (ValueError, TypeError):
samples_data["L001"][param] = 0.0
if samples_data and not structured_data.get("SP_Lab_Test_Report"):
container_key = "SP_Lab_Test_Report" if is_sp_leaf else "Farm_Leaf_Test_Data"
if container_key not in structured_data:
structured_data[container_key] = {}
for sample_id, sample_data in samples_data.items():
if sample_data and any(
(isinstance(v, (int, float)) and v != 0.0) or (not isinstance(v, (int, float)) and v)
for v in sample_data.values()
):
structured_data[container_key][sample_id] = sample_data
# Final normalization: prefer populated SP Lab report when present
if structured_data.get("SP_Lab_Test_Report"):
return {"SP_Lab_Test_Report": structured_data["SP_Lab_Test_Report"]}
if structured_data.get("Farm_Soil_Test_Data"):
return {"Farm_Soil_Test_Data": structured_data["Farm_Soil_Test_Data"]}
if structured_data.get("Farm_Leaf_Test_Data"):
return {"Farm_Leaf_Test_Data": structured_data["Farm_Leaf_Test_Data"]}
# Empty but format-detected
if container_type.lower() == 'soil':
if is_sp_soil:
return {"SP_Lab_Test_Report": {}}
return {"Farm_Soil_Test_Data": {}}
if is_sp_leaf:
return {"SP_Lab_Test_Report": {}}
return {"Farm_Leaf_Test_Data": {}}
except Exception as e:
# Return empty structure on error - no hardcoded fallback data
if container_type.lower() == 'soil':
if 'SP LAB' in (raw_text or '').upper() or re.search(r'S\d{1,4}/\d{2}', raw_text or ''):
return {"SP_Lab_Test_Report": {}}
return {"Farm_Soil_Test_Data": {}}
if 'SP LAB' in (raw_text or '').upper() or re.search(r'P\d{1,4}/\d{2}', raw_text or ''):
return {"SP_Lab_Test_Report": {}}
return {"Farm_Leaf_Test_Data": {}}
def _flatten_ocr_sample(sample: dict, container_type: str) -> tuple:
"""Return (sample_id, flat_param_dict) from a Document AI / Excel sample object."""
if not isinstance(sample, dict):
return None, {}
sample_id = (
sample.get('sample_id')
or sample.get('Sample ID')
or sample.get('Sample No.')
or sample.get('Lab No.')
or sample.get('lab_no')
)
# Nested soil: {sample_id, data: {...}}
data = sample.get('data') if isinstance(sample.get('data'), dict) else None
# Nested leaf Document AI shape
dry = sample.get('% Dry Matter') if isinstance(sample.get('% Dry Matter'), dict) else None
mgkg = sample.get('mg/kg Dry Matter') if isinstance(sample.get('mg/kg Dry Matter'), dict) else None
flat = {}
if data:
for k, v in data.items():
if v is None or isinstance(v, dict):
continue
num = _parse_numeric_token(v) if not isinstance(v, (int, float)) else float(v)
flat[k] = num if num is not None else v
elif dry or mgkg:
# Flatten leaf nested structure into standard keys
key_map_dry = {
'N': 'N (%)', 'P': 'P (%)', 'K': 'K (%)', 'MG': 'Mg (%)', 'Mg': 'Mg (%)',
'CA': 'Ca (%)', 'Ca': 'Ca (%)',
}
key_map_mg = {
'B': 'B (mg/kg)', 'CU': 'Cu (mg/kg)', 'Cu': 'Cu (mg/kg)',
'ZN': 'Zn (mg/kg)', 'Zn': 'Zn (mg/kg)',
}
if dry:
for k, v in dry.items():
out_k = key_map_dry.get(str(k).upper() if len(str(k)) <= 2 else str(k), key_map_dry.get(str(k), None))
if not out_k:
# try direct
ku = str(k).upper()
out_k = {'N': 'N (%)', 'P': 'P (%)', 'K': 'K (%)', 'MG': 'Mg (%)', 'CA': 'Ca (%)'}.get(ku)
if out_k:
num = _parse_numeric_token(v) if not isinstance(v, (int, float)) else float(v)
if num is not None:
flat[out_k] = num
if mgkg:
for k, v in mgkg.items():
ku = str(k).upper()
out_k = {'B': 'B (mg/kg)', 'CU': 'Cu (mg/kg)', 'ZN': 'Zn (mg/kg)'}.get(ku)
if out_k:
num = _parse_numeric_token(v) if not isinstance(v, (int, float)) else float(v)
if num is not None:
flat[out_k] = num
else:
skip = {
'sample_id', 'Sample ID', 'Sample No.', 'Lab No.', 'sample_no', 'lab_no',
'data', '% Dry Matter', 'mg/kg Dry Matter',
}
for k, v in sample.items():
if k in skip or v is None or isinstance(v, dict):
continue
num = _parse_numeric_token(v) if not isinstance(v, (int, float)) else float(v)
flat[k] = num if num is not None else v
# Normalize common soil param aliases to compact keys
if container_type.lower() == 'soil' and flat:
alias = {
'Nitrogen (%)': 'N (%)',
'Organic Carbon (%)': 'Org. C (%)',
'Available P (mg/kg)': 'Avail P (mg/kg)',
'C.E.C (meq%)': 'CEC (meq%)',
'CEC (meq/100 g)': 'CEC (meq%)',
}
flat = {alias.get(k, k): v for k, v in flat.items()}
return (str(sample_id) if sample_id is not None else None), flat
def _score_structured_samples(samples: dict, container_type: str) -> float:
"""Score how realistic a structured sample dict is (detect shifted columns)."""
if not samples:
return -1e9
total = 0.0
count = 0
for data in samples.values():
if not isinstance(data, dict) or not data:
continue
if container_type.lower() == 'soil':
order = [
'pH', 'N (%)', 'Org. C (%)', 'Total P (mg/kg)', 'Avail P (mg/kg)',
'Exch. K (meq%)', 'Exch. Ca (meq%)', 'Exch. Mg (meq%)', 'CEC (meq%)',
]
# also accept expanded aliases already normalized
window = []
for p in order:
v = data.get(p)
if isinstance(v, (int, float)):
window.append(float(v))
else:
break
if len(window) >= 5:
total += _score_soil_window(window)
count += 1
else:
order = ['N (%)', 'P (%)', 'K (%)', 'Mg (%)', 'Ca (%)', 'B (mg/kg)', 'Cu (mg/kg)', 'Zn (mg/kg)']
window = []
for p in order:
v = data.get(p)
if isinstance(v, (int, float)):
window.append(float(v))
else:
break
if len(window) >= 5:
total += _score_leaf_window(window)
count += 1
if count == 0:
return -1e9
return total / count
def _structured_from_ocr_tables(ocr_result: dict, container_type: str) -> dict:
"""Build structured samples from Document AI / OCR table objects when present."""
if not ocr_result:
return {}
tables = ocr_result.get('tables') or []
samples_data = {}
for table in tables:
ttype = str(table.get('type', '')).lower()
if ttype not in (container_type.lower(), 'unknown', ''):
# still try unknown tables if empty so far
if ttype not in ('soil', 'leaf') and samples_data:
continue
if ttype in ('soil', 'leaf') and ttype != container_type.lower():
continue
for sample in table.get('samples') or []:
sid, flat = _flatten_ocr_sample(sample, container_type)
if sid and flat:
samples_data[sid] = flat
if not samples_data:
details = (ocr_result.get('raw_data') or {}).get('extraction_details') or {}
for key in ('SP_Lab_Test_Report', 'Farm_Soil_Test_Data', 'Farm_3_Soil_Test_Data', 'Farm_Leaf_Test_Data', 'leaf_data'):
block = details.get(key)
if isinstance(block, dict) and block.get('samples'):
for sample in block['samples']:
sid, flat = _flatten_ocr_sample(sample, container_type)
if sid and flat:
samples_data[sid] = flat
elif isinstance(block, dict) and block:
# map of sample_id -> data
for sid, data in block.items():
if sid in ('total_samples', 'sample_ids', 'parameters', 'report_type', 'samples'):
continue
if isinstance(data, dict):
_, flat = _flatten_ocr_sample({'sample_id': sid, **data} if 'data' not in data else {'sample_id': sid, 'data': data.get('data', data)}, container_type)
if not flat and isinstance(data, dict):
flat = {k: v for k, v in data.items() if not isinstance(v, dict)}
if flat:
samples_data[str(sid)] = flat
if not samples_data:
return {}
ids = list(samples_data.keys())
is_sp = any('/' in str(i) for i in ids) or 'SP LAB' in str(
(ocr_result.get('raw_data') or {}).get('text', '')
).upper()
if is_sp:
return {"SP_Lab_Test_Report": samples_data}
if container_type.lower() == 'soil':
return {"Farm_Soil_Test_Data": samples_data}
return {"Farm_Leaf_Test_Data": samples_data}
def _merge_structured_sources(text_struct: dict, table_struct: dict, raw_text: str, container_type: str) -> dict:
"""Pick the best structured source so output matches real OCR (tables or text).
Document AI header-mapped tables usually beat positional text parsing.
Bad text parses (shifted columns) must not overwrite good tables.
"""
text_key = next(iter(text_struct), None) if text_struct else None
table_key = next(iter(table_struct), None) if table_struct else None
text_samples = (text_struct or {}).get(text_key or '', {}) or {}
table_samples = (table_struct or {}).get(table_key or '', {}) or {}
text_score = _score_structured_samples(text_samples, container_type)
table_score = _score_structured_samples(table_samples, container_type)
# Prefer higher score; if close, prefer more samples
prefer_table = False
if table_samples and not text_samples:
prefer_table = True
elif text_samples and not table_samples:
prefer_table = False
elif table_samples and text_samples:
if table_score > text_score + 0.5:
prefer_table = True
elif text_score > table_score + 0.5:
prefer_table = False
else:
# tie-breaker: more complete params / more samples
def completeness(samples):
if not samples:
return 0
return sum(len(v) for v in samples.values() if isinstance(v, dict)) / max(len(samples), 1)
prefer_table = completeness(table_samples) >= completeness(text_samples)
else:
return text_struct or table_struct or {}
if prefer_table:
chosen_key = table_key or text_key or 'SP_Lab_Test_Report'
merged = dict(table_samples)
# Fill missing samples from text if text score is ok
if text_score > 0:
for sid, data in text_samples.items():
if sid not in merged:
merged[sid] = data
else:
chosen_key = text_key or table_key or 'SP_Lab_Test_Report'
merged = dict(text_samples)
if table_score > 0:
for sid, data in table_samples.items():
if sid not in merged:
merged[sid] = data
else:
# fill missing keys from table
for k, v in data.items():
if k not in merged[sid] or merged[sid][k] in (None, '', 0):
merged[sid][k] = v
return {chosen_key: merged}
def _show_raw_text_as_json(raw_text: str, container_type: str, ocr_result: dict = None) -> None:
"""Display structured OCR data that faithfully follows the uploaded document.
Priority: Document AI / Excel tables (header-mapped) when realistic, else raw-text
parse with sliding-window alignment. Never uses hardcoded sample templates.
"""
structured_data = format_raw_text_as_structured_json(raw_text, container_type)
try:
table_struct = _structured_from_ocr_tables(ocr_result or {}, container_type)
if table_struct:
structured_data = _merge_structured_sources(
structured_data, table_struct, raw_text, container_type
)
except Exception:
pass
# Final pass: for SP Lab IDs, re-parse raw text and keep the higher-scoring version
try:
text_only = format_raw_text_as_structured_json(raw_text, container_type)
structured_data = _merge_structured_sources(
text_only, structured_data, raw_text, container_type
)
except Exception:
pass
st.markdown(f"### 📝 {t('upload_raw_text', 'Raw Extracted Text Data')}")
st.markdown(f"#### 📊 {t('upload_structured_data', 'Structured OCR Data (JSON Format)')}")
st.markdown(f"**{t('upload_ai_analysis_note', 'This data will be used by the AI for analysis. Each sample ID contains its parameter values:')}**")
try:
import json
formatted_json = json.dumps(structured_data, indent=2, ensure_ascii=False)
st.code(formatted_json, language="json")
except Exception:
st.json(structured_data)
if container_type == 'soil':
st.session_state.structured_soil_data = structured_data
else:
st.session_state.structured_leaf_data = structured_data
st.info("💡 **AI Analysis Ready**: The structured data above will be used for comprehensive step-by-step analysis.")
st.markdown("#### 🔍 Raw OCR Text (Reference Only)")
st.code(raw_text, language="text")
st.caption(f"Raw text length: {len(raw_text)} characters | Container: {container_type}")
if __name__ == "__main__":
# Initialize session state defaults
if 'current_page' not in st.session_state:
st.session_state.current_page = 'upload'
if 'user_id' not in st.session_state:
st.session_state.user_id = None
if 'analysis_data' not in st.session_state:
st.session_state.analysis_data = {}
# Display the upload page
show_upload_page()
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