Update app.py
Browse files
app.py
CHANGED
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@@ -23,23 +23,6 @@ import spaces
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import requests
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from PIL import Image
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from transformers import pipeline
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from pathlib import Path
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def data_badge(content):
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"""Render a compact informational badge for data/model disclosures."""
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return f"""
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<div style="
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padding: 12px 16px;
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margin: 8px 0 16px 0;
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border-radius: 10px;
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border: 1px solid rgba(120, 130, 150, 0.25);
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background: rgba(120, 130, 150, 0.08);
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font-size: 0.9em;
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line-height: 1.5;
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">
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{content}
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</div>
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"""
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# ---------------------------------------------------------------------------
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# Config — override any of these via Space "Variables and secrets"
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@@ -54,7 +37,9 @@ HF_TOKEN = os.environ.get("HF_TOKEN") # add as a Space SECRET to enable the cha
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ROUTER_URL = "https://router.huggingface.co/v1/chat/completions"
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PAGE_DISCLAIMER = (
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"This tool is a research/portfolio project, not a medical device."
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)
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# Optional second classifier specifically for pigmented-lesion cases (HAM10000-based,
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@@ -191,7 +176,15 @@ def chat_completion(messages, max_tokens=500):
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json={"model": CHAT_MODEL_ID, "messages": messages, "max_tokens": max_tokens},
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timeout=60,
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)
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resp.
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data = resp.json()
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return data["choices"][0]["message"]["content"]
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@@ -380,35 +373,59 @@ def chat_respond(message, history):
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# ---------------------------------------------------------------------------
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# Model Performance tab data loading
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# ---------------------------------------------------------------------------
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ASSETS_DIR = BASE_DIR / "assets"
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def load_performance_artifacts():
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"""Load model-evaluation images generated by the evaluation notebook."""
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artifacts = {
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"unified_confusion_matrix": None,
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"melanoma_threshold_curve": None,
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"cluster_confusion_matrix": None,
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}
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return
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ABOUT_MARKDOWN = f"""
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@@ -449,6 +466,18 @@ about what it isn't: a validated medical device.
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- 🟢 **Low** — typically manageable with general skin care. Doctor visit
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optional, especially if unsure or it's not improving.
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{PAGE_DISCLAIMER}
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"""
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@@ -497,44 +526,21 @@ with gr.Blocks(title="Skin Disease Detection — Demo") as demo:
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),
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)
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with gr.Tab("📊 Model
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"🧪 All charts below are computed on <b>held-out test data</b> "
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"by <code>build_artifacts.py</code> — fully reproducible."
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))
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artifacts = load_performance_artifacts()
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if not any(artifacts.values()):
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gr.Markdown(
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"
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"Run
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"
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)
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else:
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gr.Image(
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value=artifacts["unified_confusion_matrix"],
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label="24-Class Confusion Matrix"
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)
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if artifacts["melanoma_threshold_curve"]:
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gr.Image(
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value=artifacts["melanoma_threshold_curve"],
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label="Melanoma Precision / Recall vs. Decision Threshold"
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)
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if artifacts["cluster_confusion_matrix"]:
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gr.Image(
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value=artifacts["cluster_confusion_matrix"],
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label="Disease Similarity Cluster Confusion Matrix"
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)
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with gr.Tab("ℹ️ About"):
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gr.Markdown(ABOUT_MARKDOWN)
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@@ -545,4 +551,4 @@ with gr.Blocks(title="Skin Disease Detection — Demo") as demo:
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)
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if __name__ == "__main__":
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demo.launch()
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import requests
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from PIL import Image
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from transformers import pipeline
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# ---------------------------------------------------------------------------
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# Config — override any of these via Space "Variables and secrets"
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ROUTER_URL = "https://router.huggingface.co/v1/chat/completions"
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PAGE_DISCLAIMER = (
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"This tool is a research/portfolio project, not a medical device. It hasn't "
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"been clinically validated. Use it to get informed and organize your thoughts "
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"before a real appointment — not as a substitute for one."
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)
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# Optional second classifier specifically for pigmented-lesion cases (HAM10000-based,
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json={"model": CHAT_MODEL_ID, "messages": messages, "max_tokens": max_tokens},
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timeout=60,
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)
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if not resp.ok:
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# Surface the actual reason from the response body (e.g. "model not
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# supported by any provider") instead of just the generic status line —
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# that detail is what actually explains a 400/404, not "Bad Request".
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try:
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detail = resp.json()
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except Exception:
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detail = resp.text
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raise RuntimeError(f"{resp.status_code} error from router for model '{CHAT_MODEL_ID}': {detail}")
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data = resp.json()
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return data["choices"][0]["message"]["content"]
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# ---------------------------------------------------------------------------
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# Model Performance tab data loading
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# ---------------------------------------------------------------------------
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ASSETS_DIR = "assets"
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def load_performance_reports():
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"""Scan assets/ for *_metrics.json files and pair each with its confusion-matrix
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image if present. Returns a list of dicts; empty list if nothing's been uploaded yet."""
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import json
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reports = []
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if not os.path.isdir(ASSETS_DIR):
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return reports
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for fname in sorted(os.listdir(ASSETS_DIR)):
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if not fname.endswith("_metrics.json"):
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continue
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prefix = fname[: -len("_metrics.json")]
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try:
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with open(os.path.join(ASSETS_DIR, fname)) as f:
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data = json.load(f)
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except Exception:
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continue
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image_path = None
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for ext in (".png", ".jpg", ".jpeg"):
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candidate = os.path.join(ASSETS_DIR, f"{prefix}_confusion_matrix{ext}")
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if os.path.isfile(candidate):
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image_path = candidate
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break
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reports.append({"data": data, "image_path": image_path})
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return reports
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def format_performance_markdown(report):
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data = report["data"]
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lines = [f"### {data.get('model_name', 'Model')}"]
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acc = data.get("accuracy")
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f1m = data.get("f1_macro")
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if acc is not None:
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lines.append(f"**Accuracy:** {acc*100:.1f}% · **Macro F1:** {f1m*100:.1f}%" if f1m is not None else f"**Accuracy:** {acc*100:.1f}%")
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per_class = data.get("per_class", {})
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if per_class:
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lines.append("\n| Class | Precision | Recall | F1 | Support |")
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lines.append("|---|---|---|---|---|")
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for cls, m in per_class.items():
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lines.append(
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f"| {cls} | {m.get('precision', 0)*100:.1f}% | {m.get('recall', 0)*100:.1f}% "
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f"| {m.get('f1', 0)*100:.1f}% | {int(m.get('support', 0))} |"
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)
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notes = data.get("notes")
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if notes:
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lines.append(f"\n_Note: {notes}_")
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return "\n".join(lines)
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ABOUT_MARKDOWN = f"""
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- 🟢 **Low** — typically manageable with general skin care. Doctor visit
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optional, especially if unsure or it's not improving.
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### Known limitations (read this before trusting the output)
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- **Not clinically validated.** Benchmark accuracy on a public dataset is
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not the same as real-world diagnostic reliability.
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- **Dataset label limitations.** The DermNet taxonomy combines melanoma
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with benign moles under one label — the app defaults that whole category
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to High severity rather than pretending to distinguish them.
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- **Skin-tone representation.** Public dermatology datasets skew toward
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lighter skin tones; performance on underrepresented skin tones is
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unverified without a dedicated bias audit.
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- **No clinical validation, IRB review, or regulatory clearance** has been
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done. This should inform, not replace, professional care.
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{PAGE_DISCLAIMER}
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"""
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),
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with gr.Tab("📊 Model Performance"):
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performance_reports = load_performance_reports()
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if not performance_reports:
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gr.Markdown(
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"_No model performance data yet._\n\n"
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"Run either fine-tuning notebook in this repo, then download the "
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"`*_metrics.json` and `*_confusion_matrix.png` files it produces and place "
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"them in this Space's `assets/` folder. This tab picks them up automatically "
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"on the next restart."
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)
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else:
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for report in performance_reports:
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gr.Markdown(format_performance_markdown(report))
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if report["image_path"]:
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gr.Image(value=report["image_path"], label="Confusion matrix (test set)", show_label=True)
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with gr.Tab("ℹ️ About"):
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gr.Markdown(ABOUT_MARKDOWN)
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)
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if __name__ == "__main__":
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demo.launch()
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