Hugging Face's logo

Spaces:
PypCoder
/
seraph-api
Sleeping

App Files Community
seraph-api
File size: 5,355 Bytes
21c9bd3
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
"""
Builds the HTML visualization block shown after a prediction — the
sequence node grid, metrics cards, alignment view, and info/fun-fact card.
"""
import html


def build_result_html(sequence, pred_str, true_ss=None, q3_score=None, description="", fun_fact=""):
    """Renders the custom HTML result panel matching the app's design system."""

    # 1. Interactive Node Grid (first 60 residues shown as scannable nodes)
    grid_nodes_html = "<div class='sequence-grid'>"
    display_limit = min(len(sequence), 60)

    for i in range(display_limit):
        aa = sequence[i]
        st = pred_str[i]
        grid_nodes_html += f"""
        <div class="seq-node" data-state="{st}">
            <span class="seq-aa">{aa}</span>
            <span class="seq-state">{st}</span>
        </div>
        """
    grid_nodes_html += "</div>"

    if len(sequence) > 60:
        grid_nodes_html += f"""
        <p style='text-align: center; color: #8e8e93; font-size: 0.78rem; font-family: "JetBrains Mono"; margin-top: 12px;'>
            + {len(sequence) - 60} additional amino acid residues sequence mapped below
        </p>
        """

    # 2. Structure Composition Analysis
    h_cnt, e_cnt, c_cnt = pred_str.count('H'), pred_str.count('E'), pred_str.count('C')
    tot = max(len(pred_str), 1)
    h_pct, e_pct, c_pct = (h_cnt / tot) * 100, (e_cnt / tot) * 100, (c_cnt / tot) * 100

    # 3. Alignment Rows (Monospaced Sequence Alignment)
    pred_align_html = ""
    truth_align_html = ""

    for i in range(len(sequence)):
        p_char = pred_str[i]
        if true_ss and i < len(true_ss):
            t_char = true_ss[i]
            if p_char == t_char:
                pred_align_html += f"<span class='match'>{p_char}</span>"
            else:
                pred_align_html += f"<span class='miss'>{p_char}</span>"
            truth_align_html += t_char
        else:
            pred_align_html += p_char

    alignment_card_html = f"""
    <div class="alignment-card">
        {f'''
        <div class="align-row">
            <div class="row-label">Ground Truth</div>
            <div class="row-seq">{truth_align_html}</div>
        </div>
        ''' if true_ss else ''}
        <div class="align-row">
            <div class="row-label">SERAPH Pred</div>
            <div class="row-seq">{pred_align_html}</div>
        </div>
        <div class="align-row">
            <div class="row-label">AA Sequence</div>
            <div class="row-seq" style="color: #8e8e93;">{sequence}</div>
        </div>
    </div>
    """

    # 4. Metric Header Card
    if q3_score is not None:
        metrics_card_html = f"""
        <div class="metrics-grid">
            <div class="metric-card winner">
                <div class="metric-value">{q3_score:.1f}%</div>
                <div class="metric-label">Q3 Accuracy Score</div>
            </div>
            <div class="metric-card">
                <div class="metric-value">{len(sequence)}</div>
                <div class="metric-label">Residue Length</div>
            </div>
        </div>
        """
    else:
        metrics_card_html = f"""
        <div class="metrics-grid">
            <div class="metric-card winner">
                <div class="metric-value">{len(sequence)}</div>
                <div class="metric-label">Residues Analyzed</div>
            </div>
            <div class="metric-card">
                <div class="metric-value">{h_pct:.0f}% / {e_pct:.0f}% / {c_pct:.0f}%</div>
                <div class="metric-label">Helix / Sheet / Coil</div>
            </div>
        </div>
        """

    # 5. Protein Info & Fun Fact Card
    info_card_html = ""
    if description or fun_fact:
        info_card_html = f"""
        <div style="background: rgba(255,255,255,0.025); border: 1px solid rgba(255,255,255,0.08); border-radius: 16px; padding: 24px; margin-top: 20px;">
            {f'<p style="color: #f5f5f7; font-size: 0.92rem; margin-bottom: 12px; line-height: 1.5;"><strong>Overview:</strong> {html.escape(description)}</p>' if description else ''}
            {f'<p style="color: #38bdf8; font-size: 0.88rem; background: rgba(56, 189, 248, 0.08); border: 1px solid rgba(56, 189, 248, 0.2); padding: 12px 16px; border-radius: 10px; margin-top: 8px;"><strong>💡 Fun Fact:</strong> {html.escape(fun_fact)}</p>' if fun_fact else ''}
        </div>
        """

    # Full Combined Output Block
    return f"""
    <div style="animation: fadeIn 0.5s ease-out;">
        {metrics_card_html}

        <div class="sequence-board" style="margin-bottom: 24px;">
            <div style="display: flex; justify-content: space-between; align-items: center; margin-bottom: 20px;">
                <span class="section-label" style="margin: 0;">Predicted Secondary Structure Mapping</span>
                <div class="board-legend" style="margin: 0;">
                    <div class="legend-item"><div class="legend-dot h"></div> Helix (H) {h_cnt} ({h_pct:.0f}%)</div>
                    <div class="legend-item"><div class="legend-dot e"></div> Sheet (E) {e_cnt} ({e_pct:.0f}%)</div>
                    <div class="legend-item"><div class="legend-dot c"></div> Coil (C) {c_cnt} ({c_pct:.0f}%)</div>
                </div>
            </div>
            {grid_nodes_html}
        </div>

        {alignment_card_html}
        {info_card_html}
    </div>
    """